Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Reverse (-)

8436409 .. 8440686

Gene Structure 4278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGTTTCTTTGTTACTTGGTTTTGTGTAAACTGAACATTATCAAGGTCCATGAGACAAGGTCTCATTCTCATGGAAATGCTGAAGAGGACAAAGTGACGACGAGGAAGCAGAAAGCCGAGAGCAAGGCTCATGAGGCAGAGCAGTCTCCAAAGAAGGCCAAATCTGAAGGTGACAACGGCAATACAAATGGAAAATCCTCGGAGAAATTAGTTGCCGAGTATGAGAAGCTCTGCGCAGCGGTCAAGGACAACCTTTCAACCGAACAGATGCGCGAAATCTTGGAAGCTAATGGCCAGGACTCCTCCGGCTCTGATTCCACCATTCTACGGAAATGTCAAGACTTGCTGTTTTATGGTCCATTAGATAAATGTCCCGCATGCAATGGCGATTTGGAGTTCAGGGTTATACGCTATTCTTGCACTGGATCTTATAGTGAGTGGGCAACTTGTACATTTATTACAATGGATCCGCCAAGGAAACTAGAACCAATCAAGTTGCCAGATAGTGTCCTCAACTCTCCTGCATCCGATTTGCTAAAGGATTACGAGGACCCAGGTCGCCGTCCTCAGAAGCATTTAAGCATCCCAGTTAAGCCTTTTACTGGGATGTTGATGTCGCTTATGGGCCGTCTTAGTGCATCTCATCAATACTGGAGAAAAGAAATAGAAAAACACGGAGGAAAAGTTGCCAACCATGTGATTGGTGTAACTTGCCTGATTGCATCCCCTGCGGAGCGAGACAGAGGTGGCACGGGTAAACTTGCTGAAGCAATGGAAAGAGGAATTCCTGTAATAAGCGAAGCATGGCTGAAAGACAGCATCGAGAAACAAGAACCCCAGCCTCTCGAAGCGTATGATATTGTTAGTGATCTTGCTCCCGATGGCAGAGGAGTTCCATGGTACAAAATGGATCCAAGCGAAGAGGCACTTGAGTCCCTTTCAACAGAACTGAAGATATATGGGAAGAGAAGTGTCCACAAGGATAGTAAATTGCGGGAGCGAGACGGGAAAATCTTTGAGAGAGATGGCATATTATACAACTGCGCCTTGTCTCGTTGTGATCTGGGCAGAAAACTGAACGATTATTGCATCATGCAACTTATTACAGTACCACAGTGCAACCTGCATTTGTACTACAAGAAAGGAAAAGCTGGCGATGACCCTAATGCGGAGGAAAGGCTTGAAGAGTGGGATAATGTGGACTACGCTGTCATGGAGTTTGTGAGGCTCTTCGAGGAAGCAACCGGAAATGAGTTTGAACCATGGGAAAGAGAGAAGAAAATCCAGAAGAAGCCGCTGAAGTTTTACCCTATGGACATGGATGACGGAGTTGATGTGAGGCATGGAGGGCTTGGGCTTCACCAATTGGGAGTTGCTGCCACACATTGCAAACTTGAGCCGATGGTTGCAAATTTCATGAAGGTTTTATGCAGTCAAGAGATTTACAAATATGCTTTAATGGAAATGGGTTATGACGCGCCCGAACTTCCAATGGGGATGCTTTCCGTTGTCCACCTAAAACGATGTGAGGAGGTTCTTCAGAAATTCGTGGAGACATTGAAATCAATGAAGGATGCAGGGCCGAAGGCTGAGGCAGTTTGGTCAGATTTTAGTCAACGATGGTTCACCCTTATGCACTCTACTAGACCTTTTATCTTCAGAGACTATCAGGAACTTGCAGATAATGCTGCAGCTGCACTTGAAACTATTCGAGACATAACCATGGCTTCCCATCTCATTGGAGACATGGGTGAATCTACCCTTGATGACCCCTTGTCCGAGCGATACAACAAATTGGGCTGCTCAATTTCTCCACTGGATAAGGAATCTGATGACTACAAGATGATCCTGAAGTACCTGGAGAAGACCTACGAACCTGTCAAAGTTGGAGATGTTGAATATGGGGTGTCTGTTGATAACATATTTGTTATCGAATCAAGTGCTTGCCAATCTCTGGATGAAATAAAGAAGTTACCGAACAAAGTGCTCTTATGGTGTGGAACACGGAGCTCAAATATGTTGAGGCACCTGCATAAGGGTTTCTTGCCAGCAATATGCTCTCTGCCTGTTCCAGGCTATATGTTTGGAAGGGCTATTGTGTGCTCTGATGCTGCTGCAGAAGCTGCAAGGTACGGGTTTACTGCAGTGGACAGACCGGAAGGGTTCTTGGTTTTAGCTGTAGCCTCTCAAGGAGACCAGATCACCAAGGTTAAGACCGCACCGGAGGATACCAAATCTTTAGAGGAGAAGAAAGTAGGAGTTAAAGGCTTGGGGAGGAAGAAAACTGATGAATCGGAGCACTTTGTTTGGCAAGACGATATCAAAGTTCCTTGTGGCCGCCTGGTACCTTCAGATGATAAAGAAAGCATTCTCGAGTACAACGAGTATGCTATTTATGATCCGGCACAGGTAAGCATCAGGTTTTTGGTAGCTGTGAAGTATGAAGAGAAGGATTCAGTGATGGAGCCGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

826

Amino Acids

93.0

Weight (kDa)

5.45

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	65 - 119	4.9e-15	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	121 - 160	1.1e-12	PADR1 domain, zinc ribbon fold
BRCT	PF00533	197 - 274	1.4e-07	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	200 - 286	2.8e-06	BRCT domain
WGR	PF05406	346 - 424	2.8e-07	WGR domain
PARP_reg	PF02877	463 - 596	1.1e-26	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	610 - 813	7.3e-52	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2037
AasI	GACNNNNNNGTC	1 cut(s)	1208
Acc16I	TGCGCA	1 cut(s)	235
Acc36I	ACCTGC	2 cut(s)	1131, 2037
Acc65I	GGTACC	1 cut(s)	2344
AccB1I	GGYRCC	2 cut(s)	2025, 2344
AccB7I	CCANNNNNTGG	1 cut(s)	1954
AccII	CGCG	2 cut(s)	273, 1478
AciI	CCGC	9 cut(s)	239, 375, 470, 731, 994, 1169, 1295, 2217, 2338
AclWI	GGATC	7 cut(s)	433, 461, 474, 905, 918, 1840, 2393
AcoI	YGGCCR	2 cut(s)	292, 2335
AcsI	RAATTY	3 cut(s)	783, 1411, 1544
AcuI	CTGAAG	9 cut(s)	102, 186, 786, 971, 1319, 1523, 1642, 1871, 2334
AfaI	GTAC	8 cut(s)	451, 902, 1110, 1133, 1856, 2132, 2346, 2378
AfiI	CCNNNNNNNGG	6 cut(s)	327, 602, 1168, 1954, 2035, 2072
AgsI	TTSAA	7 cut(s)	258, 942, 1184, 1259, 1561, 1703, 1898
AhdI	GACNNNNNGTC	1 cut(s)	1774
AjnI	CCWGG	5 cut(s)	294, 553, 1857, 2071, 2340
AluBI	AGCT	8 cut(s)	229, 287, 1151, 1694, 2010, 2123, 2177, 2432
AluI	AGCT	8 cut(s)	229, 287, 1151, 1694, 2010, 2123, 2177, 2432
Alw21I	GWGCWC	4 cut(s)	1989, 2012, 2105, 2301
AlwI	GGATC	7 cut(s)	433, 461, 474, 905, 918, 1840, 2393
AlwNI	CAGNNNCTG	1 cut(s)	2123
Ama87I	CYCGRG	1 cut(s)	2372
AoxI	GGCC	5 cut(s)	156, 292, 625, 1580, 2335
ApeKI	GCWGC	9 cut(s)	236, 1376, 1688, 1691, 1694, 1800, 2111, 2114, 2123
ApoI	RAATTY	3 cut(s)	783, 1411, 1544
Asp700I	GAANNNNTTC	2 cut(s)	1707, 2367
Asp718I	GGTACC	1 cut(s)	2344
AspLEI	GCGC	4 cut(s)	236, 273, 1046, 1480
AspS9I	GGNCC	5 cut(s)	46, 356, 550, 625, 1580
AsuHPI	GGTGA	5 cut(s)	182, 1352, 1618, 1763, 2194
AvaI	CYCGRG	1 cut(s)	2372
AvaII	GGWCC	3 cut(s)	46, 356, 550
BalI	TGGCCA	1 cut(s)	294
BamHI	GGATCC	2 cut(s)	466, 910
BanI	GGYRCC	2 cut(s)	2025, 2344
BanII	GRGCYC	1 cut(s)	2012
BbsI	GAAGAC	1 cut(s)	1871
Bbv12I	GWGCWC	4 cut(s)	1989, 2012, 2105, 2301
BbvCI	CCTCAGC	1 cut(s)	1590
BbvI	GCAGC	9 cut(s)	248, 1363, 1675, 1681, 1703, 1787, 2098, 2101, 2110
BccI	CCATC	6 cut(s)	875, 1019, 1396, 1614, 1740, 2455
BceAI	ACGGC	3 cut(s)	193, 546, 612
BcgI	CGANNNNNNTGC	4 cut(s)	1922, 1956, 1966, 2000
BciT130I	CCWGG	5 cut(s)	296, 555, 1859, 2073, 2342
BciVI	GTATCC	1 cut(s)	2221
BfaI	CTAG	2 cut(s)	482, 1644
BfmI	CTRYAG	4 cut(s)	1689, 2115, 2142, 2178
BfuAI	ACCTGC	2 cut(s)	1131, 2037
BfuI	GTATCC	1 cut(s)	2221
Bme1390I	CCNGG	5 cut(s)	296, 555, 1859, 2073, 2342
Bme18I	GGWCC	3 cut(s)	46, 356, 550
BmeRI	GACNNNNNGTC	1 cut(s)	1774
BmeT110I	CYCGRG	1 cut(s)	2372
BmgT120I	GGNCC	5 cut(s)	46, 356, 550, 625, 1580
BmiI	GGNNCC	6 cut(s)	468, 552, 912, 2027, 2346, 2466
BmrFI	CCNGG	5 cut(s)	296, 555, 1859, 2073, 2342
BmrI	ACTGGG	2 cut(s)	581, 612
BmuI	ACTGGG	2 cut(s)	581, 612
BoxI	GACNNNNGTC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	1871
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	2 cut(s)	673, 1880
Bpu10I	CCTNAGC	1 cut(s)	1590
BpuEI	CTTGAG	3 cut(s)	950, 1415, 2172
BsaI	GGTCTC	2 cut(s)	66, 2187
BsaJI	CCNNGG	7 cut(s)	198, 473, 553, 896, 1262, 1722, 2205
BsaWI	WCCGGW	3 cut(s)	1244, 2155, 2221
BsaXI	ACNNNNNCTCC	4 cut(s)	669, 699, 1320, 1350
Bsc4I	CCNNNNNNNGG	6 cut(s)	327, 602, 1168, 1954, 2035, 2072
Bse1I	ACTGG	5 cut(s)	427, 587, 607, 656, 1821
Bse3DI	GCAATG	3 cut(s)	388, 777, 1384
BseBI	CCWGG	5 cut(s)	296, 555, 1859, 2073, 2342
BseDI	CCNNGG	7 cut(s)	198, 473, 553, 896, 1262, 1722, 2205
BseGI	GGATG	8 cut(s)	524, 582, 612, 722, 1327, 1503, 1579, 1963
BseLI	CCNNNNNNNGG	6 cut(s)	327, 602, 1168, 1954, 2035, 2072
BseMI	GCAATG	3 cut(s)	388, 777, 1384
BseMII	CTCAG	2 cut(s)	581, 1581
BseNI	ACTGG	5 cut(s)	427, 587, 607, 656, 1821
BseRI	GAGGAG	4 cut(s)	292, 903, 1544, 2258
BseXI	GCAGC	9 cut(s)	248, 1363, 1675, 1681, 1703, 1787, 2098, 2101, 2110
BseYI	CCCAGC	1 cut(s)	837
BsgI	GTGCAG	1 cut(s)	1680
Bsh1236I	CGCG	2 cut(s)	273, 1478
BshFI	GGCC	5 cut(s)	158, 294, 627, 1582, 2337
BshNI	GGYRCC	2 cut(s)	2025, 2344
BsiHKAI	GWGCWC	4 cut(s)	1989, 2012, 2105, 2301
BsiHKCI	CYCGRG	1 cut(s)	2372
BsiSI	CCGG	6 cut(s)	306, 1245, 2156, 2222, 2402, 2468
BslFI	GGGAC	2 cut(s)	357, 919
BslI	CCNNNNNNNGG	6 cut(s)	327, 602, 1168, 1954, 2035, 2072
BsmBI	CGTCTC	1 cut(s)	996
BsmFI	GGGAC	2 cut(s)	357, 919
BsmI	GAATGC	1 cut(s)	2367
BsnI	GGCC	5 cut(s)	158, 294, 627, 1582, 2337
Bso31I	GGTCTC	2 cut(s)	66, 2187
BsoBI	CYCGRG	1 cut(s)	2372
Bsp1286I	GDGCHC	4 cut(s)	1989, 2012, 2105, 2301
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
Bsp19I	CCATGG	3 cut(s)	896, 1262, 1722
BspACI	CCGC	9 cut(s)	239, 375, 470, 731, 994, 1169, 1295, 2217, 2338
BspANI	GGCC	5 cut(s)	158, 294, 627, 1582, 2337
BspCNI	CTCAG	2 cut(s)	580, 1582
BspFNI	CGCG	2 cut(s)	273, 1478
BspHI	TCATGA	2 cut(s)	130, 1416
BspLI	GGNNCC	6 cut(s)	468, 552, 912, 2027, 2346, 2466
BspMAI	CTGCAG	3 cut(s)	1693, 2119, 2146
BspMI	ACCTGC	2 cut(s)	1131, 2037
BspPI	GGATC	7 cut(s)	433, 461, 474, 905, 918, 1840, 2393
BspQI	GCTCTTC	1 cut(s)	1235
BspT107I	GGYRCC	2 cut(s)	2025, 2344
BspTNI	GGTCTC	2 cut(s)	66, 2187
BsrDI	GCAATG	3 cut(s)	388, 777, 1384
BsrGI	TGTACA	1 cut(s)	449
BsrI	ACTGG	5 cut(s)	427, 587, 607, 656, 1821
BssECI	CCNNGG	7 cut(s)	198, 473, 553, 896, 1262, 1722, 2205
BssMI	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
BssT1I	CCWWGG	5 cut(s)	473, 896, 1262, 1722, 2205
Bst2UI	CCWGG	5 cut(s)	296, 555, 1859, 2073, 2342
Bst4CI	ACNGT	2 cut(s)	1108, 1116
Bst6I	CTCTTC	6 cut(s)	78, 915, 959, 1179, 1235, 2439
BstAPI	GCANNNNNTGC	3 cut(s)	728, 1685, 2123
BstAUI	TGTACA	1 cut(s)	449
BstC8I	GCNNGC	4 cut(s)	379, 1153, 1945, 2049
BstDEI	CTNAG	3 cut(s)	567, 632, 1590
BstDSI	CCRYGG	3 cut(s)	896, 1262, 1722
BstENI	CCTNNNNNAGG	2 cut(s)	2033, 2070
BstF5I	GGATG	8 cut(s)	524, 582, 612, 722, 1327, 1503, 1579, 1963
BstFNI	CGCG	2 cut(s)	273, 1478
BstHHI	GCGC	4 cut(s)	236, 273, 1046, 1480
BstKTI	GATC	8 cut(s)	428, 469, 871, 913, 1063, 1848, 2202, 2401
BstMBI	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 417, 728, 1348, 1685, 1694, 2120, 2123
BstNI	CCWGG	5 cut(s)	296, 555, 1859, 2073, 2342
BstNSI	RCATGY	1 cut(s)	381
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSCI	CCNGG	5 cut(s)	294, 553, 1857, 2071, 2340
BstSFI	CTRYAG	4 cut(s)	1689, 2115, 2142, 2178
BstUI	CGCG	2 cut(s)	273, 1478
BstV1I	GCAGC	9 cut(s)	248, 1363, 1675, 1681, 1703, 1787, 2098, 2101, 2110
BstV2I	GAAGAC	1 cut(s)	1871
BstX2I	RGATCY	3 cut(s)	425, 466, 910
BstXI	CCANNNNNNTGG	2 cut(s)	701, 1739
BstYI	RGATCY	3 cut(s)	425, 466, 910
BsuI	GTATCC	1 cut(s)	2221
BsuRI	GGCC	5 cut(s)	158, 294, 627, 1582, 2337
BtgI	CCRYGG	3 cut(s)	896, 1262, 1722
BtgZI	GCGATG	1 cut(s)	1170
BtsCI	GGATG	8 cut(s)	524, 582, 612, 722, 1327, 1503, 1579, 1963
BtsI	GCAGTG	1 cut(s)	2151
BtsIMutI	CAGTG	5 cut(s)	420, 1121, 1814, 2151, 2463
BveI	ACCTGC	2 cut(s)	1131, 2037
Cac8I	GCNNGC	4 cut(s)	379, 1153, 1945, 2049
CaiI	CAGNNNCTG	1 cut(s)	2123
CciI	TCATGA	2 cut(s)	130, 1416
CfoI	GCGC	4 cut(s)	236, 273, 1046, 1480
Cfr13I	GGNCC	5 cut(s)	46, 356, 550, 625, 1580
CseI	GACGC	1 cut(s)	1484
Csp6I	GTAC	8 cut(s)	450, 901, 1109, 1132, 1855, 2131, 2345, 2377
CviQI	GTAC	8 cut(s)	450, 901, 1109, 1132, 1855, 2131, 2345, 2377
DdeI	CTNAG	3 cut(s)	567, 632, 1590
DpnI	GATC	8 cut(s)	427, 468, 870, 912, 1062, 1847, 2201, 2400
DpnII	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
DrdI	GACNNNNNNGTC	1 cut(s)	1208
DriI	GACNNNNNGTC	1 cut(s)	1774
DseDI	GACNNNNNNGTC	1 cut(s)	1208
EaeI	YGGCCR	2 cut(s)	292, 2335
Eam1104I	CTCTTC	6 cut(s)	78, 915, 959, 1179, 1235, 2439
Eam1105I	GACNNNNNGTC	1 cut(s)	1774
EarI	CTCTTC	6 cut(s)	78, 915, 959, 1179, 1235, 2439
EciI	GGCGGA	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	2010
Eco130I	CCWWGG	5 cut(s)	473, 896, 1262, 1722, 2205
Eco24I	GRGCYC	1 cut(s)	2012
Eco31I	GGTCTC	2 cut(s)	66, 2187
Eco32I	GATATC	1 cut(s)	2320
Eco47I	GGWCC	3 cut(s)	46, 356, 550
Eco53kI	GAGCTC	1 cut(s)	2010
Eco57I	CTGAAG	9 cut(s)	102, 186, 786, 971, 1319, 1523, 1642, 1871, 2334
Eco88I	CYCGRG	1 cut(s)	2372
EcoICRI	GAGCTC	1 cut(s)	2010
EcoNI	CCTNNNNNAGG	2 cut(s)	2033, 2070
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	783
EcoRII	CCWGG	5 cut(s)	294, 553, 1857, 2071, 2340
EcoRV	GATATC	1 cut(s)	2320
EcoT14I	CCWWGG	5 cut(s)	473, 896, 1262, 1722, 2205
EcoT38I	GRGCYC	1 cut(s)	2012
ErhI	CCWWGG	5 cut(s)	473, 896, 1262, 1722, 2205
Esp3I	CGTCTC	1 cut(s)	996
FalI	AAGNNNNNCTT	4 cut(s)	912, 944, 2027, 2059
FaqI	GGGAC	2 cut(s)	357, 919
FauI	CCCGC	2 cut(s)	382, 987
FokI	GGATG	8 cut(s)	511, 569, 619, 709, 1334, 1510, 1586, 1970
FriOI	GRGCYC	1 cut(s)	2012
FspBI	CTAG	2 cut(s)	482, 1644
FspI	TGCGCA	1 cut(s)	235
GlaI	GCGC	4 cut(s)	235, 272, 1045, 1479
GsaI	CCCAGC	1 cut(s)	841
GsuI	CTGGAG	2 cut(s)	673, 1880
HaeIII	GGCC	5 cut(s)	158, 294, 627, 1582, 2337
HapII	CCGG	6 cut(s)	306, 1245, 2156, 2222, 2402, 2468
HgaI	GACGC	1 cut(s)	1484
HhaI	GCGC	4 cut(s)	236, 273, 1046, 1480
Hin6I	GCGC	4 cut(s)	234, 271, 1044, 1478
HinP1I	GCGC	4 cut(s)	234, 271, 1044, 1478
HincII	GTYRAC	1 cut(s)	1616
HindII	GTYRAC	1 cut(s)	1616
HinfI	GANTC	8 cut(s)	299, 314, 932, 1754, 1826, 1934, 2291, 2453
HpaII	CCGG	6 cut(s)	306, 1245, 2156, 2222, 2402, 2468
HphI	GGTGA	5 cut(s)	182, 1352, 1618, 1763, 2194
Hpy166II	GTNNAC	9 cut(s)	29, 758, 976, 1201, 1513, 1616, 1626, 2139, 2149
Hpy8I	GTNNAC	9 cut(s)	29, 758, 976, 1201, 1513, 1616, 1626, 2139, 2149
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	9 cut(s)	148, 161, 1414, 1564, 1579, 2082, 2153, 2358, 2443
HpyCH4III	ACNGT	2 cut(s)	1108, 1116
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 417, 728, 1348, 1685, 1694, 2120, 2123
HpyF3I	CTNAG	3 cut(s)	567, 632, 1590
HspAI	GCGC	4 cut(s)	234, 271, 1044, 1478
KpnI	GGTACC	1 cut(s)	2348
Kzo9I	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
LguI	GCTCTTC	1 cut(s)	1235
LmnI	GCTCC	6 cut(s)	733, 880, 997, 2007, 2296, 2464
Lsp1109I	GCAGC	9 cut(s)	248, 1363, 1675, 1681, 1703, 1787, 2098, 2101, 2110
MaeI	CTAG	2 cut(s)	482, 1644
MaeIII	GTNAC	5 cut(s)	11, 94, 170, 706, 1971
MalI	GATC	8 cut(s)	427, 468, 870, 912, 1062, 1847, 2201, 2400
MboI	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
MfeI	CAATTG	1 cut(s)	1364
MflI	RGATCY	3 cut(s)	425, 466, 910
MhlI	GDGCHC	4 cut(s)	1989, 2012, 2105, 2301
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	8 cut(s)	206, 783, 989, 1364, 1411, 1544, 1793, 1806
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	293, 941
MmeI	TCCRAC	1 cut(s)	1867
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	2 cut(s)	1707, 2367
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	5 cut(s)	578, 591, 1457, 2211, 2262
MslI	CAYNNNNRTG	4 cut(s)	69, 75, 1631, 1721
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	3 cut(s)	239, 1297, 1694
MspI	CCGG	6 cut(s)	306, 1245, 2156, 2222, 2402, 2468
MspR9I	CCNGG	5 cut(s)	296, 555, 1859, 2073, 2342
MunI	CAATTG	1 cut(s)	1364
Mva1269I	GAATGC	1 cut(s)	2367
MvaI	CCWGG	5 cut(s)	296, 555, 1859, 2073, 2342
MvnI	CGCG	2 cut(s)	273, 1478
MwoI	GCNNNNNNNGC	8 cut(s)	134, 417, 728, 1348, 1685, 1694, 2120, 2123
NcoI	CCATGG	3 cut(s)	896, 1262, 1722
NdeII	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
NlaIV	GGNNCC	6 cut(s)	468, 552, 912, 2027, 2346, 2466
NmeAIII	GCCGAG	2 cut(s)	142, 241
NmuCI	GTSAC	2 cut(s)	94, 170
NsbI	TGCGCA	1 cut(s)	235
NspI	RCATGY	1 cut(s)	381
PaeI	GCATGC	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	2372
PagI	TCATGA	2 cut(s)	130, 1416
PaqCI	CACCTGC	1 cut(s)	2037
PciSI	GCTCTTC	1 cut(s)	1235
PcsI	WCGNNNNNNNCGW	1 cut(s)	2379
PctI	GAATGC	1 cut(s)	2367
PdmI	GAANNNNTTC	2 cut(s)	1707, 2367
PfeI	GAWTC	6 cut(s)	314, 1754, 1826, 1934, 2291, 2453
PflFI	GACNNNGTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	1954
PleI	GAGTC	2 cut(s)	293, 940
PpsI	GAGTC	2 cut(s)	293, 940
PpuMI	RGGWCCY	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	2012
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	5 cut(s)	294, 553, 1857, 2071, 2340
PspFI	CCCAGC	1 cut(s)	837
PspGI	CCWGG	5 cut(s)	294, 553, 1857, 2071, 2340
PspN4I	GGNNCC	6 cut(s)	468, 552, 912, 2027, 2346, 2466
PspPI	GGNCC	5 cut(s)	46, 356, 550, 625, 1580
PspPPI	RGGWCCY	1 cut(s)	550
PstI	CTGCAG	3 cut(s)	1693, 2119, 2146
PstNI	CAGNNNCTG	1 cut(s)	2123
PsuI	RGATCY	3 cut(s)	425, 466, 910
PsyI	GACNNNGTC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	1694
RsaI	GTAC	8 cut(s)	451, 902, 1110, 1133, 1856, 2132, 2346, 2378
RsaNI	GTAC	8 cut(s)	450, 901, 1109, 1132, 1855, 2131, 2345, 2377
RseI	CAYNNNNRTG	4 cut(s)	69, 75, 1631, 1721
SacI	GAGCTC	1 cut(s)	2012
SapI	GCTCTTC	1 cut(s)	1235
SaqAI	TTAA	5 cut(s)	578, 591, 1457, 2211, 2262
Sau3AI	GATC	8 cut(s)	425, 466, 868, 910, 1060, 1845, 2199, 2398
Sau96I	GGNCC	5 cut(s)	46, 356, 550, 625, 1580
SchI	GAGTC	2 cut(s)	293, 941
ScrFI	CCNGG	5 cut(s)	296, 555, 1859, 2073, 2342
SduI	GDGCHC	4 cut(s)	1989, 2012, 2105, 2301
SfcI	CTRYAG	4 cut(s)	1689, 2115, 2142, 2178
Sfr274I	CTCGAG	1 cut(s)	2372
SinI	GGWCC	3 cut(s)	46, 356, 550
SlaI	CTCGAG	1 cut(s)	2372
SmiMI	CAYNNNNRTG	4 cut(s)	69, 75, 1631, 1721
SmlI	CTYRAG	4 cut(s)	929, 1394, 2187, 2372
SmoI	CTYRAG	4 cut(s)	929, 1394, 2187, 2372
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	8 cut(s)	206, 783, 989, 1364, 1411, 1544, 1793, 1806
SsiI	CCGC	9 cut(s)	239, 375, 470, 731, 994, 1169, 1295, 2217, 2338
SspMI	CTAG	2 cut(s)	482, 1644
SstI	GAGCTC	1 cut(s)	2012
StyD4I	CCNGG	5 cut(s)	294, 553, 1857, 2071, 2340
StyI	CCWWGG	5 cut(s)	473, 896, 1262, 1722, 2205
TaaI	ACNGT	2 cut(s)	1108, 1116
TaqI	TCGA	6 cut(s)	822, 846, 1233, 1711, 1932, 2373
TasI	AATT	8 cut(s)	206, 783, 989, 1364, 1411, 1544, 1793, 1806
TatI	WGTACW	3 cut(s)	449, 1131, 2376
TauI	GCSGC	2 cut(s)	1297, 2340
TfiI	GAWTC	6 cut(s)	314, 1754, 1826, 1934, 2291, 2453
Tru1I	TTAA	5 cut(s)	578, 591, 1457, 2211, 2262
Tru9I	TTAA	5 cut(s)	578, 591, 1457, 2211, 2262
TscAI	CASTG	5 cut(s)	427, 1121, 1821, 2151, 2463
TseFI	GTSAC	2 cut(s)	94, 170
TseI	GCWGC	9 cut(s)	236, 1376, 1688, 1691, 1694, 1800, 2111, 2114, 2123
Tsp45I	GTSAC	2 cut(s)	94, 170
TspDTI	ATGAA	6 cut(s)	1405, 1433, 1583, 1974, 2304, 2457
TspGWI	ACGGA	5 cut(s)	343, 690, 1341, 1495, 2020
TspRI	CASTG	5 cut(s)	427, 1121, 1821, 2151, 2463
Tth111I	GACNNNGTC	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	1954
VpaK11BI	GGWCC	3 cut(s)	46, 356, 550
XagI	CCTNNNNNAGG	2 cut(s)	2033, 2070
XapI	RAATTY	3 cut(s)	783, 1411, 1544
XceI	RCATGY	1 cut(s)	381
XhoI	CTCGAG	1 cut(s)	2372
XmnI	GAANNNNTTC	2 cut(s)	1707, 2367
XspI	CTAG	2 cut(s)	482, 1644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.