Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011378

Physical Location & Seq

Genomic Coordinates Reverse (-)

8914247 .. 8921527

Gene Structure 7281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGGGAGCTAATATGCCAAATCAGCAAACATCTTCTAACGTGCACCCATCCTACTTCTCATCCGCCGTTTGTTTCCCGAGAAAATCCCCAAAAAAGAAAATTAAAAAAAGAAAAACCCGAAAATCACCACACCCCGCTCTCTGTATGGCGGTCCGAGCCTCCGTGTCGCGGTTTCCGATCGACGCCGGGGCCCACGAGAGCTCAGGCATCCCATGGGGCGTTTCGGTGACGCCGTTCGCGACGAAGGATGAGAACGGCCAGTCGCCGGCATACGGATCGGACGGCCAGCTGCTGCCGAGGTGCGAGAACTGCTGGGCGTATTTCAACACGTTCTGCGAGCTGGATCAGTGGTCGTGGAACTGTGCCCTGTGCGGAAACCCTCAGGGGCTTTCGTCTCAGGCCATTGCTCGATACTCGCACCCTCAGTCTTGCCCCGAAATGATGTCCTCGTTCGTAGATCTGGAGCTTCCTGTAGAAGAGTCGGATGAAGTAATGCAACCTCGCCCGGTTTACGTTGCGGTCATTGATTTGTCCTCTTCAGAAGAATTTTTGGAACTTATTAAAAGTGCATTGCTGGCCTCCTTGGAAGCTCTTGGGCCTGGTTCTCTCTTTGGTCTTGCTACTTTTAGCCACAAATTAGGGTTGTATGATGTTCAAGGACCTATACCAGTTGTAAAGAATGTTTTCATTCCACCGGAAACAGACGGTACCCTACCAATTGAGCTTGAAGATGTCATGCCATTGTTACAGTTTTTGGCTCCAGTGGAAACTTGTAAGGACCGTATTGGATCTGCACTTGAAACGCTCAGACCAACAACTTCATGGGAGAGAACTACAGCAGCTGGTCAAGGAATTGATGGTGTTTTGATGGGTGGGCGAGGGTTTGGGGTGGCAATGGAAGCACTTTTGAACTACCTTGGATCTGAGTATGGAAGTACATTTGCATTAGGTAGAGTCTTTGCCTTTTTGTCTGGTCCTCCTGATTATGGAGCTGGGCAACTAGATACAAGACGGTATGGTGAACAATATGCTAGTAAGGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCATTCTACAGAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTTTGCGTGGACATTTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTTTGAAGTTTCTAAGTGTAGACAGTGGAGGCTCATTGTATTTATATTCGAACACTGATGACTCAACTCTTCCTCAGGACATGTACCGAATGCTAAGTCGGCCATATGCTTTTGGTTGTGTACTGCGATTGAGGACCTCATCTGAATTCAAAACTGGCCACTCTTATGGTCATTTCTTTCCGGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTATGCGACATATGCTTATGACTTTGAGTTTGAAGACACCAAGGGATTTGCAAAACATGGATCAGAGCCTCCTATTATACAGATTGCATTTCAATACACTGTTGTAATGCCTCCTAAGGAGCTCTCCGATTCAACATCCGTGTCCTCAAGTAGAGGCAAGTATTCCCTTAAACGACGACTAAGGATCCGAACATTACAATGTGGAGTTGCCCAAAATATGAATGAACTCTACGACAGTGTTGATCCTGAAGTAATCCTGTCACTGCTTGTTCACAAGGTTATACTAGCCTCTTTGGAGCAAGGAGTTCGGGAAGGCAGAATATTGCTTCATGATTGGCTTGTGATCCTAACAGCTCAATACAATGAAGCGTATAAACTAATTCAATACAATAATGGAAGTGCAGGAACTGCTCAGATTGATGTTGCATTCACACAATGTCCAGAACTGCAGTCTTTGCCCCGCTTGGTTTTTGCATTGCTTCGAAATCCTCTGCTCCGTTTTCATGAAGAAGGTGTTCATCCGGACTACCGAATCTACCTGCAGTGCCTTTTCAGTGCACTGGAACCAAGTTCACTTCATCGTGCCGTGTATCCAGTGCTGACCTCCTATTCTACTCCGGACAAACAAGCATACCCACGCCATTCACTGAGTCGTGCAGCACTGATTACCAGTGGTAGTCCTATATTTATCCTTGATGCATTTACGGCTCTGATTGTGTTCTATTCCTCAACGGCAGACCCTTCACTTCCTTTTCCTCCACCTCATGATTGTTTGTTGCGGACTGTGATCAACAATTTGAAGAAAGAGAGATGCATCACCCCCAAACTCCTATTTATCAGAGGAGGGCAGGACGATGCCACACCTTTCGAGAATTATCTTATTGAGGAACAGGATGTTGATGGAAGCGGTATAACGAGCGTTATGGGTTTTGTTTCCTTTCTGGAGGATGTTACGCAGAGTGTGCTAGAATACATGAAGTCTGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

795

Amino Acids

87.82

Weight (kDa)

5.26

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27460
fragaria_vesca	FvH4_3g24980
malus_domestica	MD03G1145900.v1.1 MD11G1164800.v1.1
prunus_persica	Prupe.6G130700_v2.0.a1 Prupe.6G130700_v2.0.a1
pyrus_communis	pycom03g10000 pycom439g00040
rosa_chinensis	RchiOBHm_Chr5g0040981 RchiOBHm_Chr5g0044841 RchiOBHm_Chr5g0045601
rosa_laevigata	RLG00000034301
rosa_multiflora	Rmu_sc0004567.1_g000018
rosa_roxburghii	Rroxscaffold_1G00034820 Rroxscaffold_1G00036200
rosa_rugosa	Rorug05G0219300
rosa_samantha	Rh5AG301100 Rh5CG335200 Rh5DG318500
rosa_wichuraiana	Rw5G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1106
Acc36I	ACCTGC	2 cut(s)	1106, 1941
Acc65I	GGTACC	1 cut(s)	707
AccB1I	GGYRCC	1 cut(s)	707
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	1154, 1188
AccII	CGCG	2 cut(s)	169, 239
AccIII	TCCGGA	3 cut(s)	1348, 1915, 2011
AcoI	YGGCCR	4 cut(s)	256, 283, 1268, 1324
AcsI	RAATTY	2 cut(s)	545, 1313
AcuI	CTGAAG	2 cut(s)	522, 1662
AcyI	GRCGYC	3 cut(s)	183, 230, 1166
AfaI	GTAC	4 cut(s)	709, 937, 1253, 1290
AfiI	CCNNNNNNNGG	4 cut(s)	168, 265, 272, 986
AflIII	ACRYGT	2 cut(s)	327, 1248
AjnI	CCWGG	1 cut(s)	598
Alw21I	GWGCWC	4 cut(s)	45, 203, 1518, 1954
Alw26I	GTCTC	1 cut(s)	399
Alw44I	GTGCAC	2 cut(s)	41, 1950
AlwNI	CAGNNNCTG	3 cut(s)	292, 842, 1802
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	3 cut(s)	1348, 1915, 2011
AoxI	GGCC	8 cut(s)	189, 256, 283, 399, 576, 596, 1268, 1324
ApaI	GGGCCC	1 cut(s)	193
ApaLI	GTGCAC	2 cut(s)	41, 1950
ApeKI	GCWGC	5 cut(s)	289, 292, 839, 1097, 2051
ApoI	RAATTY	2 cut(s)	545, 1313
ArsI	GACNNNNNNTTYG	4 cut(s)	1249, 1281, 1406, 1438
Asp700I	GAANNNNTTC	2 cut(s)	683, 1908
Asp718I	GGTACC	1 cut(s)	707
AspS9I	GGNCC	9 cut(s)	151, 189, 190, 596, 659, 778, 974, 1051, 1302
AsuC2I	CCSGG	2 cut(s)	187, 506
AsuHPI	GGTGA	4 cut(s)	117, 238, 1031, 2203
AsuII	TTCGAA	2 cut(s)	1217, 1876
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	6 cut(s)	151, 659, 778, 974, 1051, 1302
AxyI	CCTNAGG	3 cut(s)	381, 1242, 1509
BaeGI	GKGCMC	4 cut(s)	45, 193, 367, 1954
BalI	TGGCCA	1 cut(s)	1326
BamHI	GGATCC	2 cut(s)	1351, 1578
BanI	GGYRCC	1 cut(s)	707
BanII	GRGCYC	3 cut(s)	193, 203, 1518
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	1434
Bbv12I	GWGCWC	4 cut(s)	45, 203, 1518, 1954
BbvI	GCAGC	5 cut(s)	276, 279, 851, 1084, 2063
BccI	CCATC	4 cut(s)	55, 851, 862, 2288
BceAI	ACGGC	7 cut(s)	50, 217, 271, 298, 1964, 2115, 2142
BcgI	CGANNNNNNTGC	4 cut(s)	258, 292, 1682, 1716
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	1995
BclI	TGATCA	1 cut(s)	2181
BcnI	CCSGG	2 cut(s)	187, 506
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	4 cut(s)	1001, 1032, 1679, 2360
BfmI	CTRYAG	5 cut(s)	471, 834, 1084, 1841, 1934
BfuAI	ACCTGC	2 cut(s)	1106, 1941
BfuI	GTATCC	1 cut(s)	1995
BglII	AGATCT	2 cut(s)	457, 1090
BisI	GCNGC	5 cut(s)	290, 293, 840, 1098, 2052
BlsI	GCNGC	5 cut(s)	291, 294, 841, 1099, 2053
Bme1390I	CCNGG	3 cut(s)	187, 506, 600
Bme18I	GGWCC	6 cut(s)	151, 659, 778, 974, 1051, 1302
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	9 cut(s)	151, 189, 190, 596, 659, 778, 974, 1051, 1302
BmiI	GGNNCC	7 cut(s)	190, 191, 709, 759, 1353, 1580, 1959
BmrFI	CCNGG	3 cut(s)	187, 506, 600
BmsI	GCATC	6 cut(s)	216, 1036, 2080, 2195, 2217, 2239
BpiI	GAAGAC	1 cut(s)	1434
BpmI	CTGGAG	3 cut(s)	482, 744, 2357
Bpu10I	CCTNAGC	2 cut(s)	202, 1068
Bpu14I	TTCGAA	2 cut(s)	1217, 1876
BpuEI	CTTGAG	1 cut(s)	1525
BpuMI	CCSGG	2 cut(s)	187, 506
BsaHI	GRCGYC	3 cut(s)	183, 230, 1166
BsaJI	CCNNGG	6 cut(s)	186, 212, 296, 582, 916, 1434
BsaWI	WCCGGW	4 cut(s)	694, 1348, 1915, 2011
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 265, 272, 986
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	7 cut(s)	259, 668, 761, 1327, 1959, 1988, 2064
Bse21I	CCTNAGG	3 cut(s)	381, 1242, 1509
Bse3DI	GCAATG	5 cut(s)	402, 569, 900, 1058, 1868
BseAI	TCCGGA	3 cut(s)	1348, 1915, 2011
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	6 cut(s)	186, 212, 296, 582, 916, 1434
BseLI	CCNNNNNNNGG	4 cut(s)	168, 265, 272, 986
BseMI	GCAATG	5 cut(s)	402, 569, 900, 1058, 1868
BseNI	ACTGG	7 cut(s)	259, 668, 761, 1327, 1959, 1988, 2064
BseRI	GAGGAG	1 cut(s)	2250
BseSI	GKGCMC	4 cut(s)	45, 193, 367, 1954
BseXI	GCAGC	5 cut(s)	276, 279, 851, 1084, 2063
BseYI	CCCAGC	2 cut(s)	312, 992
BsgI	GTGCAG	3 cut(s)	777, 1815, 2070
Bsh1236I	CGCG	2 cut(s)	169, 239
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	8 cut(s)	191, 258, 285, 401, 578, 598, 1270, 1326
BshNI	GGYRCC	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	4 cut(s)	45, 203, 1518, 1954
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	7 cut(s)	186, 266, 506, 695, 1349, 1916, 2012
BslI	CCNNNNNNNGG	4 cut(s)	168, 265, 272, 986
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsmI	GAATGC	2 cut(s)	1263, 1820
BsnI	GGCC	8 cut(s)	191, 258, 285, 401, 578, 598, 1270, 1326
BsoBI	CYCGRG	1 cut(s)	76
Bsp119I	TTCGAA	2 cut(s)	1217, 1876
Bsp120I	GGGCCC	1 cut(s)	189
Bsp1286I	GDGCHC	6 cut(s)	45, 193, 203, 367, 1518, 1954
Bsp13I	TCCGGA	3 cut(s)	1348, 1915, 2011
Bsp19I	CCATGG	1 cut(s)	212
Bsp68I	TCGCGA	1 cut(s)	239
BspANI	GGCC	8 cut(s)	191, 258, 285, 401, 578, 598, 1270, 1326
BspEI	TCCGGA	3 cut(s)	1348, 1915, 2011
BspFNI	CGCG	2 cut(s)	169, 239
BspHI	TCATGA	3 cut(s)	1723, 1897, 2158
BspLI	GGNNCC	7 cut(s)	190, 191, 709, 759, 1353, 1580, 1959
BspMAI	CTGCAG	2 cut(s)	1845, 1938
BspMI	ACCTGC	2 cut(s)	1106, 1941
BspT104I	TTCGAA	2 cut(s)	1217, 1876
BspT107I	GGYRCC	1 cut(s)	707
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	5 cut(s)	402, 569, 900, 1058, 1868
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	7 cut(s)	259, 668, 761, 1327, 1959, 1988, 2064
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	6 cut(s)	186, 212, 296, 582, 916, 1434
BssNAI	GTATAC	1 cut(s)	1155
BssNI	GRCGYC	3 cut(s)	183, 230, 1166
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	4 cut(s)	212, 582, 916, 1434
Bst1107I	GTATAC	1 cut(s)	1155
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	600
Bst6I	CTCTTC	3 cut(s)	471, 541, 1242
BstACI	GRCGYC	3 cut(s)	183, 230, 1166
BstAPI	GCANNNNNTGC	3 cut(s)	1802, 1849, 2356
BstBI	TTCGAA	2 cut(s)	1217, 1876
BstC8I	GCNNGC	4 cut(s)	267, 287, 338, 576
BstDSI	CCRYGG	1 cut(s)	212
BstFNI	CGCG	2 cut(s)	169, 239
BstMAI	GTCTC	1 cut(s)	399
BstMCI	CGRYCG	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	1252
BstSCI	CCNGG	3 cut(s)	185, 504, 598
BstSFI	CTRYAG	5 cut(s)	471, 834, 1084, 1841, 1934
BstSLI	GKGCMC	4 cut(s)	45, 193, 367, 1954
BstUI	CGCG	2 cut(s)	169, 239
BstV1I	GCAGC	5 cut(s)	276, 279, 851, 1084, 2063
BstV2I	GAAGAC	1 cut(s)	1434
BstX2I	RGATCY	6 cut(s)	457, 788, 920, 1090, 1351, 1578
BstXI	CCANNNNNNTGG	1 cut(s)	1334
BstYI	RGATCY	6 cut(s)	457, 788, 920, 1090, 1351, 1578
BstZ17I	GTATAC	1 cut(s)	1155
Bsu36I	CCTNAGG	3 cut(s)	381, 1242, 1509
BsuI	GTATCC	1 cut(s)	1995
BsuRI	GGCC	8 cut(s)	191, 258, 285, 401, 578, 598, 1270, 1326
BtgI	CCRYGG	1 cut(s)	212
BtsI	GCAGTG	2 cut(s)	1655, 1943
BtuMI	TCGCGA	1 cut(s)	239
BveI	ACCTGC	2 cut(s)	1106, 1941
Cac8I	GCNNGC	4 cut(s)	267, 287, 338, 576
CaiI	CAGNNNCTG	3 cut(s)	292, 842, 1802
CciI	TCATGA	3 cut(s)	1723, 1897, 2158
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	9 cut(s)	151, 189, 190, 596, 659, 778, 974, 1051, 1302
CpoI	CGGWCCG	2 cut(s)	151, 1051
CseI	GACGC	3 cut(s)	191, 238, 1155
Csp6I	GTAC	4 cut(s)	708, 936, 1252, 1289
CspI	CGGWCCG	2 cut(s)	151, 1051
CviAII	CATG	9 cut(s)	213, 736, 822, 1249, 1451, 1724, 1898, 2159, 2368
CviQI	GTAC	4 cut(s)	708, 936, 1252, 1289
EaeI	YGGCCR	4 cut(s)	256, 283, 1268, 1324
Eam1104I	CTCTTC	3 cut(s)	471, 541, 1242
EarI	CTCTTC	3 cut(s)	471, 541, 1242
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	2 cut(s)	201, 1516
Eco130I	CCWWGG	4 cut(s)	212, 582, 916, 1434
Eco24I	GRGCYC	3 cut(s)	193, 203, 1518
Eco47I	GGWCC	6 cut(s)	151, 659, 778, 974, 1051, 1302
Eco53kI	GAGCTC	2 cut(s)	201, 1516
Eco57I	CTGAAG	2 cut(s)	522, 1662
Eco81I	CCTNAGG	3 cut(s)	381, 1242, 1509
Eco88I	CYCGRG	1 cut(s)	76
EcoICRI	GAGCTC	2 cut(s)	201, 1516
EcoO109I	RGGNCCY	3 cut(s)	189, 659, 1302
EcoRI	GAATTC	1 cut(s)	1313
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	4 cut(s)	212, 582, 916, 1434
EcoT22I	ATGCAT	2 cut(s)	2095, 2210
EcoT38I	GRGCYC	3 cut(s)	193, 203, 1518
ErhI	CCWWGG	4 cut(s)	212, 582, 916, 1434
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	9 cut(s)	216, 739, 825, 1252, 1454, 1727, 1901, 2162, 2371
FatI	CATG	9 cut(s)	212, 735, 821, 1248, 1450, 1723, 1897, 2158, 2367
FauI	CCCGC	2 cut(s)	142, 1862
FauNDI	CATATG	2 cut(s)	1273, 1405
FbaI	TGATCA	1 cut(s)	2181
FblI	GTMKAC	2 cut(s)	1154, 1188
Fnu4HI	GCNGC	5 cut(s)	290, 293, 840, 1098, 2052
FriOI	GRGCYC	3 cut(s)	193, 203, 1518
Fsp4HI	GCNGC	5 cut(s)	290, 293, 840, 1098, 2052
FspBI	CTAG	4 cut(s)	1001, 1032, 1679, 2360
GluI	GCNGC	5 cut(s)	290, 293, 840, 1098, 2052
GsaI	CCCAGC	2 cut(s)	316, 996
GsuI	CTGGAG	3 cut(s)	482, 744, 2357
HaeIII	GGCC	8 cut(s)	191, 258, 285, 401, 578, 598, 1270, 1326
HapII	CCGG	7 cut(s)	186, 266, 506, 695, 1349, 1916, 2012
HgaI	GACGC	3 cut(s)	191, 238, 1155
Hin1I	GRCGYC	3 cut(s)	183, 230, 1166
Hin1II	CATG	9 cut(s)	216, 739, 825, 1252, 1454, 1727, 1901, 2162, 2371
HinfI	GANTC	7 cut(s)	479, 954, 1229, 1391, 1523, 1926, 2044
HpaII	CCGG	7 cut(s)	186, 266, 506, 695, 1349, 1916, 2012
HphI	GGTGA	4 cut(s)	117, 238, 1031, 2203
Hpy99I	CGWCG	3 cut(s)	185, 244, 1572
HpyAV	CCTTC	4 cut(s)	238, 1700, 1898, 2145
HpyCH4IV	ACGT	3 cut(s)	39, 329, 513
HpySE526I	ACGT	3 cut(s)	39, 329, 513
Hsp92I	GRCGYC	3 cut(s)	183, 230, 1166
Hsp92II	CATG	9 cut(s)	216, 739, 825, 1252, 1454, 1727, 1901, 2162, 2371
Kpn2I	TCCGGA	3 cut(s)	1348, 1915, 2011
KpnI	GGTACC	1 cut(s)	711
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	2181
LmnI	GCTCC	7 cut(s)	5, 463, 763, 989, 1513, 1690, 1893
Lsp1109I	GCAGC	5 cut(s)	276, 279, 851, 1084, 2063
LweI	GCATC	6 cut(s)	216, 1036, 2080, 2195, 2217, 2239
MaeI	CTAG	4 cut(s)	1001, 1032, 1679, 2360
MaeII	ACGT	3 cut(s)	39, 329, 513
MaeIII	GTNAC	5 cut(s)	226, 744, 1141, 1653, 2344
MbiI	CCGCTC	1 cut(s)	137
MboII	GAAGA	9 cut(s)	24, 488, 528, 554, 740, 1229, 1439, 1913, 2206
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	6 cut(s)	457, 788, 920, 1090, 1351, 1578
MhlI	GDGCHC	6 cut(s)	45, 193, 203, 367, 1518, 1954
MlsI	TGGCCA	1 cut(s)	1326
MluCI	AATT	9 cut(s)	99, 545, 635, 717, 852, 1313, 1773, 2188, 2266
MluNI	TGGCCA	1 cut(s)	1326
MlyI	GAGTC	4 cut(s)	488, 963, 1223, 2053
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	1326
Mph1103I	ATGCAT	2 cut(s)	2095, 2210
MroI	TCCGGA	3 cut(s)	1348, 1915, 2011
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	2 cut(s)	683, 1908
MscI	TGGCCA	1 cut(s)	1326
MseI	TTAA	3 cut(s)	102, 561, 1563
MslI	CAYNNNNRTG	2 cut(s)	1332, 1591
Msp20I	TGGCCA	1 cut(s)	1326
MspA1I	CMGCKG	2 cut(s)	289, 842
MspI	CCGG	7 cut(s)	186, 266, 506, 695, 1349, 1916, 2012
MspR9I	CCNGG	3 cut(s)	187, 506, 600
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	2 cut(s)	1263, 1820
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	2 cut(s)	169, 239
NaeI	GCCGGC	1 cut(s)	267
NciI	CCSGG	2 cut(s)	187, 506
NcoI	CCATGG	1 cut(s)	212
NdeI	CATATG	2 cut(s)	1273, 1405
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	9 cut(s)	216, 739, 825, 1252, 1454, 1727, 1901, 2162, 2371
NlaIV	GGNNCC	7 cut(s)	190, 191, 709, 759, 1353, 1580, 1959
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	226, 1653
NruI	TCGCGA	1 cut(s)	239
NsiI	ATGCAT	2 cut(s)	2095, 2210
NspI	RCATGY	1 cut(s)	1252
NspV	TTCGAA	2 cut(s)	1217, 1876
PagI	TCATGA	3 cut(s)	1723, 1897, 2158
PaqCI	CACCTGC	1 cut(s)	1106
PciI	ACATGT	1 cut(s)	1248
PcsI	WCGNNNNNNNCGW	3 cut(s)	173, 230, 236
PctI	GAATGC	2 cut(s)	1263, 1820
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	2 cut(s)	683, 1908
PfeI	GAWTC	3 cut(s)	1391, 1523, 1926
PkrI	GCNGC	5 cut(s)	291, 294, 841, 1099, 2053
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	4 cut(s)	487, 962, 1223, 2052
PpsI	GAGTC	4 cut(s)	487, 962, 1223, 2052
PpuMI	RGGWCCY	2 cut(s)	659, 1302
PscI	ACATGT	1 cut(s)	1248
Psp124BI	GAGCTC	2 cut(s)	203, 1518
Psp5II	RGGWCCY	2 cut(s)	659, 1302
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	2 cut(s)	312, 992
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	7 cut(s)	190, 191, 709, 759, 1353, 1580, 1959
PspOMI	GGGCCC	1 cut(s)	189
PspPI	GGNCC	9 cut(s)	151, 189, 190, 596, 659, 778, 974, 1051, 1302
PspPPI	RGGWCCY	2 cut(s)	659, 1302
PstI	CTGCAG	2 cut(s)	1845, 1938
PstNI	CAGNNNCTG	3 cut(s)	292, 842, 1802
PsuI	RGATCY	6 cut(s)	457, 788, 920, 1090, 1351, 1578
PvuI	CGATCG	1 cut(s)	180
PvuII	CAGCTG	2 cut(s)	289, 842
RruI	TCGCGA	1 cut(s)	239
RsaI	GTAC	4 cut(s)	709, 937, 1253, 1290
RsaNI	GTAC	4 cut(s)	708, 936, 1252, 1289
RseI	CAYNNNNRTG	2 cut(s)	1332, 1591
Rsr2I	CGGWCCG	2 cut(s)	151, 1051
RsrII	CGGWCCG	2 cut(s)	151, 1051
SacI	GAGCTC	2 cut(s)	203, 1518
SaqAI	TTAA	3 cut(s)	102, 561, 1563
SatI	GCNGC	5 cut(s)	290, 293, 840, 1098, 2052
Sau96I	GGNCC	9 cut(s)	151, 189, 190, 596, 659, 778, 974, 1051, 1302
SchI	GAGTC	4 cut(s)	488, 963, 1223, 2053
ScrFI	CCNGG	3 cut(s)	187, 506, 600
SduI	GDGCHC	6 cut(s)	45, 193, 203, 367, 1518, 1954
SfaNI	GCATC	6 cut(s)	216, 1036, 2080, 2195, 2217, 2239
SfcI	CTRYAG	5 cut(s)	471, 834, 1084, 1841, 1934
SfuI	TTCGAA	2 cut(s)	1217, 1876
SinI	GGWCC	6 cut(s)	151, 659, 778, 974, 1051, 1302
SmiMI	CAYNNNNRTG	2 cut(s)	1332, 1591
SmlI	CTYRAG	1 cut(s)	1540
SmoI	CTYRAG	1 cut(s)	1540
Sse9I	AATT	9 cut(s)	99, 545, 635, 717, 852, 1313, 1773, 2188, 2266
SspI	AATATT	1 cut(s)	1716
SspMI	CTAG	4 cut(s)	1001, 1032, 1679, 2360
SstI	GAGCTC	2 cut(s)	203, 1518
StyD4I	CCNGG	3 cut(s)	185, 504, 598
StyI	CCWWGG	4 cut(s)	212, 582, 916, 1434
TaiI	ACGT	3 cut(s)	42, 332, 516
TaqI	TCGA	5 cut(s)	180, 409, 1217, 1876, 2262
TasI	AATT	9 cut(s)	99, 545, 635, 717, 852, 1313, 1773, 2188, 2266
TatI	WGTACW	2 cut(s)	935, 1288
TfiI	GAWTC	3 cut(s)	1391, 1523, 1926
Tru1I	TTAA	3 cut(s)	102, 561, 1563
Tru9I	TTAA	3 cut(s)	102, 561, 1563
TseFI	GTSAC	2 cut(s)	226, 1653
TseI	GCWGC	5 cut(s)	289, 292, 839, 1097, 2051
Tsp45I	GTSAC	2 cut(s)	226, 1653
TspGWI	ACGGA	4 cut(s)	151, 288, 1522, 1880
VneI	GTGCAC	2 cut(s)	41, 1950
VpaK11BI	GGWCC	6 cut(s)	151, 659, 778, 974, 1051, 1302
XapI	RAATTY	2 cut(s)	545, 1313
XceI	RCATGY	1 cut(s)	1252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	819
XmiI	GTMKAC	2 cut(s)	1154, 1188
XmnI	GAANNNNTTC	2 cut(s)	683, 1908
XspI	CTAG	4 cut(s)	1001, 1032, 1679, 2360
Zsp2I	ATGCAT	2 cut(s)	2095, 2210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.