RchiOBHm_Chr5g0045601

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011378
Physical Location & Seq
Reverse (-)
41639222 .. 41646755
7534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32366

Sequence Viewer

Length: 1008 bp
ATGGTCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTACGCCACATAAGCTTATGACTTTGAGTTTGAAGCTACCAATGAATTTTCTAAGTAAACATGGATCAGAACCTCCTATTATACAGATTGCGTTTCAATACACAGTCGTTCTGCCTCCTGAGGAGCTCACGGATTCAGGATTGGTTTCCTCAGTTAGAGGCAAGCATTCTCTTAAACGACGATTAAGGATTCGGACTTTGCAATGTGGAGTCGCCCAAAACATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTATCTCATTACTTGTTCACAAGCAAGGGGTTCGGGAAGGAAGACTGTTATTGCACGATTGGCTTGTGATTCTGACAGTTCAATACAATGAAGCTCATAAACTTGTTCACTACAAGAACGGAAGTTCAGTGACTGCCCAAATTGATGTTGCATTCTCACAATGCCCCGAACTGCAGCCTTTACCCCGATTAGTTTTTGCATTTCTTCGAAATCCTCTGCTCCTTTTTCATGAAGAAGGTGTTCACCCCGATTACCGAATCTACCTGCAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCATGTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAGCATACCCACGCCATTCATTGAGTCGTGCTGCACTGATTACCAGTGGTAGTCCGATATTTTTCCTTGATGCATTCACTGCTCTTATTGTGTTCTATTCTTCAACGGCAGACCCTACTCTACCTTTTCCTCCACCCCATGATTGTTTGCTGCGGACTGAGATCAATAAATTAAAGCAAGAGAGATGTATTACCCCTAAACTCATATTTATCAGAGGAGGGCAGGACGATGCCACAGCTTTTGAAAACTATCTCATCGAGGAACAGGACGTTGACGGAAGTGGTATAACAAGCGTTATGGGTTTTGTTTCCTTTCTTGAAGATATTACAGTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

335

Amino Acids

37.8

Weight (kDa)

6.49

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_helical PF04815 114 - 207 3.7e-09 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AciI CCGC 1 cut(s) 823
AclWI GGATC 3 cut(s) 13, 133, 302
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 8 cut(s) 40, 94, 158, 401, 608, 774, 914, 989
AluBI AGCT 5 cut(s) 76, 97, 187, 413, 908
AluI AGCT 5 cut(s) 76, 97, 187, 413, 908
Alw21I GWGCWC 2 cut(s) 189, 604
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 3 cut(s) 13, 133, 302
AlwNI CAGNNNCTG 1 cut(s) 452
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 3 cut(s) 493, 701, 820
ApoI RAATTY 1 cut(s) 106
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
Asp700I GAANNNNTTC 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 554, 637
AsuII TTCGAA 1 cut(s) 526
AxyI CCTNAGG 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 367
Bbv12I GWGCWC 2 cut(s) 189, 604
BbvI GCAGC 3 cut(s) 505, 688, 807
BceAI ACGGC 1 cut(s) 792
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 645
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 2 cut(s) 491, 584
BfuAI ACCTGC 1 cut(s) 591
BfuI GTATCC 1 cut(s) 645
BisI GCNGC 3 cut(s) 494, 702, 821
BlsI GCNGC 3 cut(s) 495, 703, 822
BmsI GCATC 2 cut(s) 730, 889
BpiI GAAGAC 1 cut(s) 367
Bpu14I TTCGAA 1 cut(s) 526
Bse1I ACTGG 2 cut(s) 638, 714
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 171, 225, 819
BseNI ACTGG 2 cut(s) 638, 714
BseRI GAGGAG 2 cut(s) 197, 900
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 3 cut(s) 505, 688, 807
BsgI GTGCAG 1 cut(s) 687
BsiHKAI GWGCWC 2 cut(s) 189, 604
BsmI GAATGC 3 cut(s) 226, 470, 743
Bsp119I TTCGAA 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 189, 604
Bsp143I GATC 4 cut(s) 18, 125, 307, 831
BspACI CCGC 1 cut(s) 823
BspCNI CTCAG 3 cut(s) 172, 224, 820
BspHI TCATGA 1 cut(s) 547
BspMAI CTGCAG 2 cut(s) 495, 588
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 3 cut(s) 13, 133, 302
BspT104I TTCGAA 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 638, 714
BssMI GATC 4 cut(s) 18, 125, 307, 831
Bst4CI ACNGT 6 cut(s) 26, 166, 302, 366, 397, 1000
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 113, 180, 211, 828
BstKTI GATC 4 cut(s) 21, 128, 310, 834
BstMBI GATC 4 cut(s) 18, 125, 307, 831
BstMWI GCNNNNNNNGC 3 cut(s) 73, 379, 749
BstSFI CTRYAG 2 cut(s) 491, 584
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 3 cut(s) 505, 688, 807
BstV2I GAAGAC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
Bsu36I CCTNAGG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 645
BtsI GCAGTG 2 cut(s) 593, 747
BtsIMutI CAGTG 8 cut(s) 307, 453, 593, 604, 704, 721, 747, 1005
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 547
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 5 cut(s) 122, 283, 548, 631, 809
CviJI RGCY 7 cut(s) 76, 97, 187, 382, 413, 496, 908
CviKI_1 RGCY 7 cut(s) 76, 97, 187, 382, 413, 496, 908
DdeI CTNAG 4 cut(s) 113, 180, 211, 828
DpnI GATC 4 cut(s) 20, 127, 309, 833
DpnII GATC 4 cut(s) 18, 125, 307, 831
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 5 cut(s) 125, 286, 551, 634, 812
FatI CATG 5 cut(s) 121, 282, 547, 630, 808
Fnu4HI GCNGC 3 cut(s) 494, 702, 821
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 494, 702, 821
FspBI CTAG 1 cut(s) 671
GluI GCNGC 3 cut(s) 494, 702, 821
Hin1II CATG 5 cut(s) 125, 286, 551, 634, 812
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 7 cut(s) 58, 194, 250, 270, 388, 576, 694
HphI GGTGA 2 cut(s) 554, 637
Hpy166II GTNNAC 7 cut(s) 119, 337, 427, 562, 602, 617, 943
Hpy188I TCNGA 5 cut(s) 130, 255, 393, 726, 884
Hpy188III TCNNGA 8 cut(s) 16, 179, 198, 311, 353, 548, 662, 986
Hpy8I GTNNAC 7 cut(s) 119, 337, 427, 562, 602, 617, 943
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 350, 548
HpyCH4III ACNGT 6 cut(s) 26, 166, 302, 366, 397, 1000
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 9 cut(s) 262, 373, 470, 493, 518, 586, 602, 704, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 379, 749
HpyF3I CTNAG 4 cut(s) 113, 180, 211, 828
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 5 cut(s) 125, 286, 551, 634, 812
Kzo9I GATC 4 cut(s) 18, 125, 307, 831
LmnI GCTCC 2 cut(s) 184, 543
LpnPI CCDG 9 cut(s) 29, 183, 192, 324, 596, 651, 727, 878, 920
Lsp1109I GCAGC 3 cut(s) 505, 688, 807
LweI GCATC 2 cut(s) 730, 889
MaeI CTAG 1 cut(s) 671
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 2 cut(s) 4, 448
MalI GATC 4 cut(s) 20, 127, 309, 833
MboI GATC 4 cut(s) 18, 125, 307, 831
MboII GAAGA 5 cut(s) 372, 515, 563, 762, 1001
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 189, 604
MluCI AATT 3 cut(s) 106, 459, 839
MlyI GAGTC 2 cut(s) 279, 703
Mph1103I ATGCAT 1 cut(s) 745
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 3 cut(s) 234, 245, 842
Mva1269I GAATGC 3 cut(s) 226, 470, 743
MwoI GCNNNNNNNGC 3 cut(s) 73, 379, 749
NdeII GATC 4 cut(s) 18, 125, 307, 831
NlaIII CATG 5 cut(s) 125, 286, 551, 634, 812
NmuCI GTSAC 2 cut(s) 4, 448
NsiI ATGCAT 1 cut(s) 745
NspV TTCGAA 1 cut(s) 526
PagI TCATGA 1 cut(s) 547
PctI GAATGC 3 cut(s) 226, 470, 743
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 5 cut(s) 58, 194, 250, 388, 576
PkrI GCNGC 3 cut(s) 495, 703, 822
PleI GAGTC 2 cut(s) 278, 702
PpsI GAGTC 2 cut(s) 278, 702
Psp124BI GAGCTC 1 cut(s) 189
PstI CTGCAG 2 cut(s) 495, 588
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 18
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 3 cut(s) 234, 245, 842
SatI GCNGC 3 cut(s) 494, 702, 821
Sau3AI GATC 4 cut(s) 18, 125, 307, 831
SchI GAGTC 2 cut(s) 279, 703
SduI GDGCHC 2 cut(s) 189, 604
SfaNI GCATC 2 cut(s) 730, 889
SfcI CTRYAG 2 cut(s) 491, 584
SfuI TTCGAA 1 cut(s) 526
Sse9I AATT 3 cut(s) 106, 459, 839
SsiI CCGC 1 cut(s) 823
SspMI CTAG 1 cut(s) 671
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 6 cut(s) 26, 166, 302, 366, 397, 1000
TaiI ACGT 1 cut(s) 942
TaqI TCGA 2 cut(s) 526, 927
TasI AATT 3 cut(s) 106, 459, 839
TfiI GAWTC 5 cut(s) 58, 194, 250, 388, 576
Tru1I TTAA 3 cut(s) 234, 245, 842
Tru9I TTAA 3 cut(s) 234, 245, 842
TscAI CASTG 8 cut(s) 307, 453, 593, 604, 711, 721, 754, 1005
TseFI GTSAC 2 cut(s) 4, 448
TseI GCWGC 3 cut(s) 493, 701, 820
Tsp45I GTSAC 2 cut(s) 4, 448
TspDTI ATGAA 8 cut(s) 119, 299, 303, 423, 536, 564, 611, 678
TspGWI ACGGA 3 cut(s) 206, 453, 960
TspRI CASTG 8 cut(s) 307, 453, 593, 604, 711, 721, 754, 1005
VneI GTGCAC 1 cut(s) 600
XapI RAATTY 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 1 cut(s) 671
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.