RchiOBHm_Chr5g0040981

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011378
Physical Location & Seq
Forward (+)
35614961 .. 35618154
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31945

Sequence Viewer

Length: 891 bp
ATGTTTAGCTGCACGTGGCTTGACATTTCCTGGAGTGATGAGAAGCAACATGTCTTGGCAGGCAAGCATTCTCTTAAACGACGATTAAGGATTTGGACTTTGCAATGTGGAGTCGCCCAAAACATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTCTCTCATTACTTGTTCACAAGGTTATATTAGCCTCCTTGGAGCAAGGGGTTCGGGAAGGAAGACTGTTATTGCACGATTGGCTTGTGATTCTGACAGTTCAATACAATGAAGCTCATAAACTTGTTCACTACAAGAACAGAAGTTCATTGACTGCCCAAATTGATGTTGCATTCTCACAATGCCCCGAACTGCAGCCTTTACCCCGATTAGTTTTTGCATTGTTTCGAAATCCTCTGCTCCTTTTTCATGAAGAAGGTGTTCACCCCGATTACCGAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCGTGTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAGCATACCCACGCCATTCATTGAGTCGTGCTGTACTGATTACCAGTGGTAGTCCGATATTTTTCCTTGATGCATTCACTGCTCTTATTGTGTTCTATTCTTCAACGGCAGACCCTACTCTACCTTTTCCTCCACCCCATGATTGTTTGCTGTGGACTGAGATCCATAAATTAAAGCAAGAGAGATGTATTACCCCTAAACTCATATTTATCAGAGGAGGGCAGGACGATGCCACAGCTTTTGAAAACTATCTCATCGAGGAACAGGACGTTGACAGAAGTGGTATAACAAGCGTTATGGGTTTTGTTTCCTTTCTTGAAGATATTACACAAAGTGTGTTAGAATACATCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

296

Amino Acids

33.86

Weight (kDa)

5.93

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_helical PF04815 50 - 161 1.3e-13 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 143, 688
AcuI CTGAAG 1 cut(s) 174
AcvI CACGTG 1 cut(s) 15
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 1 cut(s) 567
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 5 cut(s) 263, 470, 636, 776, 851
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 3 cut(s) 9, 275, 770
AluI AGCT 3 cut(s) 9, 275, 770
Alw21I GWGCWC 1 cut(s) 466
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 2 cut(s) 143, 688
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 9, 355
Asp700I GAANNNNTTC 2 cut(s) 159, 420
AsuHPI GGTGA 2 cut(s) 416, 499
AsuII TTCGAA 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 466
BbrPI CACGTG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 367
BceAI ACGGC 2 cut(s) 476, 654
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 31
BciVI GTATCC 1 cut(s) 507
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 2 cut(s) 353, 446
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 2 cut(s) 10, 356
BlsI GCNGC 2 cut(s) 11, 357
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 592, 751
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 500, 576
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 500, 576
BseRI GAGGAG 1 cut(s) 762
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 466
BsmI GAATGC 3 cut(s) 67, 332, 605
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 148, 693
BspCNI CTCAG 1 cut(s) 682
BspHI TCATGA 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 357
BspPI GGATC 2 cut(s) 143, 688
BspT104I TTCGAA 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 110
BsrI ACTGG 2 cut(s) 500, 576
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 148, 693
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 4 cut(s) 143, 228, 259, 450
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 61, 65
BstDEI CTNAG 1 cut(s) 690
BstKTI GATC 2 cut(s) 151, 696
BstMBI GATC 2 cut(s) 148, 693
BstMWI GCNNNNNNNGC 2 cut(s) 241, 611
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 353, 446
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
BsuI GTATCC 1 cut(s) 507
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 5 cut(s) 148, 455, 466, 583, 609
Cac8I GCNNGC 2 cut(s) 61, 65
CciI TCATGA 1 cut(s) 409
Csp6I GTAC 1 cut(s) 566
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 4 cut(s) 50, 124, 410, 671
CviJI RGCY 7 cut(s) 9, 19, 194, 244, 275, 358, 770
CviKI_1 RGCY 7 cut(s) 9, 19, 194, 244, 275, 358, 770
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 1 cut(s) 690
DpnI GATC 2 cut(s) 150, 695
DpnII GATC 2 cut(s) 148, 693
DraIII CACNNNGTG 1 cut(s) 866
Eco130I CCWWGG 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 174
Eco72I CACGTG 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 4 cut(s) 53, 127, 413, 674
FatI CATG 4 cut(s) 49, 123, 409, 670
Fnu4HI GCNGC 2 cut(s) 10, 356
Fsp4HI GCNGC 2 cut(s) 10, 356
FspBI CTAG 1 cut(s) 533
GluI GCNGC 2 cut(s) 10, 356
GsuI CTGGAG 1 cut(s) 52
Hin1II CATG 4 cut(s) 53, 127, 413, 674
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 4 cut(s) 111, 250, 438, 556
HphI GGTGA 2 cut(s) 416, 499
Hpy166II GTNNAC 7 cut(s) 178, 289, 424, 464, 479, 687, 805
Hpy188I TCNGA 3 cut(s) 255, 588, 746
Hpy188III TCNNGA 6 cut(s) 152, 215, 410, 524, 848, 888
Hpy8I GTNNAC 7 cut(s) 178, 289, 424, 464, 479, 687, 805
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 212, 410
HpyCH4III ACNGT 4 cut(s) 143, 228, 259, 450
HpyCH4IV ACGT 2 cut(s) 14, 801
HpyCH4V TGCA 8 cut(s) 12, 103, 235, 332, 355, 380, 464, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 611
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 2 cut(s) 14, 801
Hsp92II CATG 4 cut(s) 53, 127, 413, 674
Kzo9I GATC 2 cut(s) 148, 693
LmnI GCTCC 2 cut(s) 202, 405
LpnPI CCDG 8 cut(s) 16, 43, 45, 165, 513, 589, 740, 782
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 2 cut(s) 592, 751
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 14, 801
MalI GATC 2 cut(s) 150, 695
MboI GATC 2 cut(s) 148, 693
MboII GAAGA 4 cut(s) 234, 425, 624, 863
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 2 cut(s) 321, 701
MlyI GAGTC 2 cut(s) 120, 565
MnlI CCTC 8 cut(s) 205, 405, 515, 520, 672, 740, 743, 784
Mph1103I ATGCAT 1 cut(s) 607
MroXI GAANNNNTTC 2 cut(s) 159, 420
MseI TTAA 3 cut(s) 75, 86, 704
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 3 cut(s) 67, 332, 605
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 241, 611
NdeII GATC 2 cut(s) 148, 693
NlaIII CATG 4 cut(s) 53, 127, 413, 674
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 1 cut(s) 53
NspV TTCGAA 1 cut(s) 388
PagI TCATGA 1 cut(s) 409
PciI ACATGT 1 cut(s) 49
PctI GAATGC 3 cut(s) 67, 332, 605
PdmI GAANNNNTTC 2 cut(s) 159, 420
PfeI GAWTC 2 cut(s) 250, 438
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 2 cut(s) 11, 357
PleI GAGTC 2 cut(s) 119, 564
PmaCI CACGTG 1 cut(s) 15
PmlI CACGTG 1 cut(s) 15
PpsI GAGTC 2 cut(s) 119, 564
Ppu21I YACGTR 1 cut(s) 15
PscI ACATGT 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 29
PspCI CACGTG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 29
PstI CTGCAG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 693
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
SaqAI TTAA 3 cut(s) 75, 86, 704
SatI GCNGC 2 cut(s) 10, 356
Sau3AI GATC 2 cut(s) 148, 693
SchI GAGTC 2 cut(s) 120, 565
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 466
SfaNI GCATC 2 cut(s) 592, 751
SfcI CTRYAG 2 cut(s) 353, 446
SfuI TTCGAA 1 cut(s) 388
Sse9I AATT 2 cut(s) 321, 701
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 4 cut(s) 143, 228, 259, 450
TaiI ACGT 2 cut(s) 17, 804
TaqI TCGA 2 cut(s) 388, 789
TasI AATT 2 cut(s) 321, 701
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 2 cut(s) 250, 438
Tru1I TTAA 3 cut(s) 75, 86, 704
Tru9I TTAA 3 cut(s) 75, 86, 704
TscAI CASTG 5 cut(s) 148, 455, 466, 583, 616
TseI GCWGC 2 cut(s) 9, 355
TspDTI ATGAA 8 cut(s) 140, 144, 285, 297, 398, 426, 473, 540
TspRI CASTG 5 cut(s) 148, 455, 466, 583, 616
VneI GTGCAC 1 cut(s) 462
XceI RCATGY 1 cut(s) 53
XmnI GAANNNNTTC 2 cut(s) 159, 420
XspI CTAG 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.