Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011378

Physical Location & Seq

Genomic Coordinates Forward (+)

40321797 .. 40330399

Gene Structure 8603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGGCGGTCCGAGCCACCGTCTCGCGCTTCCCTATCGACGCCGGCGCGCACGAGAACTCCGGCATACCATGGGGCCTCACCGTGACGCCGTTCGCTAGCAAAGACGAGAACGGTCAACCTCCGGCGTATGGATCCGGCGGTCAATTGCTGCCGCGGTGCGAGAACTGCTGGGCTTACTTCAACTCTTACTGCGAGCTGGACCAGTGGTCATGGAACTGTGCCCTCTGCGGCAACCCCCAGGGACTTTCCTCTGAGGCCATTGCTCGATACTCTCACCCTCAGTCTTGCCCCGAGATGATCTCCTCCTTCGTAGATCTAGAGCTTCCTGTGGAAGAGTCGGATGAGGCAATGCAACCTCGCCCGGTTTATGTTGCGGCCATTGATTTGTCCTCTTCAGAAGAATTTTTGGAACTTACTAAAAGTGCATTGCTGGCAGCTTTGGAAGCTCTTGGGCCTGGTTCGCTGTTTGGTCTTGCTACCTTTAGCCACAAACTAGGATTGTATGATGTTCAAGGCCCTATACCAGTTGTAAAAAATGTTTTCATTCCCCCGGAAACAGAGGGCAGCCTACCAATTGAGCTTGAAGATGTCATGCCCTTGTTACAGTTCTTGGCTCCAGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTGAACTACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTATGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGCTGCTGTCGCTGTTCAAGCTGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATACTGATGATTCAACACTTCCACAGGACATGTACCGGATGCTAAGTCGACCATATGCTTTTGGCTGTGTACTGCGATTGAGGACATCATCTGAATTCAAAACTGGTCATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTACGCCACATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTTCAAAACATGGATCAGAACCTCCTATTATACAGATTGCGTTTCAATACACAGTCGTTCTGCCTCCTGAGGAGCTCACCGATTCGGGATTGGTTTCCTCAGTTAGAGGCAAGCATTCTCTTAAACGACGATTAAGGATTCGGACTTTGCAATGTGGAGTCGCCCAAAACATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTCTCTCATTACTTGTTCACAAGGTTATATTAGCCTCCTTGGAGCAAGGGGTTCGGGAAGGAAGACTGTTATTGCACGATTGGCTTGTGATTCTAACAGCTCAATACAATGAAGCTTATAAAATTGTTCACTACAAGAACGGAAGTTCAGTGACTGCCCAAATTGATGTTGCATTCTCACAATGCCCCGAACTGCAGCCTTTACCCCGATTAGTTTTTGCATTGCTTCGAAATCCTCTGCTCCTTTTTCATGAAGAAGGTGTTCATCCCGATTACCGAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCGTGTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAGCATACCCACGCCATTCATTGAGTCGTGCTGCACTGATTACCAGTGGTAGTCCGATATTTTTCCTTGATGCATTCACTGCTCTTATTGTGTTCTATTCTTCAACGGCAGACCCTACTCTACCTTTTCCTCCACCCCATGATTGTTTGCTGCGGACTGAGATCAATAGATTAAAGCAAGAGAGATGTATTACCCCTAAACTCATATTTATCAGAGGAGGGCAGGACGATGCCACAGCTTTTGAAAACTATCTCATCGAGGAACAGGATGTTGACGGAAGTGGTATAACAAGCGTTATGGGTTTTGTTTCCTTTCTTGAAGATATTACACAAAGTGTGTTAGAATACATCAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

744

Amino Acids

82.28

Weight (kDa)

4.82

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_trunk	PF04811	120 - 372	7.9e-27	Sec23/Sec24 trunk domain
Sec23_helical	PF04815	498 - 609	4e-14	Sec23/Sec24 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27460
fragaria_vesca	FvH4_3g24980
malus_domestica	MD03G1145900.v1.1 MD11G1164800.v1.1
prunus_persica	Prupe.6G130700_v2.0.a1 Prupe.6G130700_v2.0.a1
pyrus_communis	pycom03g10000 pycom439g00040
rosa_chinensis	RchiOBHm_Chr5g0040981 RchiOBHm_Chr5g0044841 RchiOBHm_Chr5g0045601
rosa_laevigata	RLG00000034301
rosa_multiflora	Rmu_sc0004567.1_g000018
rosa_roxburghii	Rroxscaffold_1G00034820 Rroxscaffold_1G00036200
rosa_rugosa	Rorug05G0219300
rosa_samantha	Rh5AG301100 Rh5CG335200 Rh5DG318500
rosa_wichuraiana	Rw5G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1623
AccI	GTMKAC	3 cut(s)	984, 1010, 1123
AccII	CGCG	3 cut(s)	25, 47, 154
AciI	CCGC	8 cut(s)	5, 138, 152, 154, 228, 374, 905, 2029
AclWI	GGATC	7 cut(s)	126, 139, 652, 784, 1202, 1318, 1487
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	401, 1169, 1295
AcuI	CTGAAG	3 cut(s)	378, 1049, 1518
AcyI	GRCGYC	3 cut(s)	39, 86, 1022
AdeI	CACNNNGTG	1 cut(s)	2210
AfaI	GTAC	3 cut(s)	1064, 1109, 1146
AfiI	CCNNNNNNNGG	2 cut(s)	128, 842
AflIII	ACRYGT	1 cut(s)	1104
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	237, 454
Alw21I	GWGCWC	2 cut(s)	1374, 1810
Alw26I	GTCTC	2 cut(s)	25, 1029
Alw44I	GTGCAC	1 cut(s)	1806
AlwI	GGATC	7 cut(s)	126, 139, 652, 784, 1202, 1318, 1487
AlwNI	CAGNNNCTG	1 cut(s)	1658
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	5 cut(s)	73, 255, 375, 452, 514
ApaLI	GTGCAC	1 cut(s)	1806
ApeKI	GCWGC	8 cut(s)	148, 434, 564, 695, 953, 1699, 1907, 2026
ApoI	RAATTY	3 cut(s)	401, 1169, 1295
ArsI	GACNNNNNNTTYG	2 cut(s)	1262, 1294
Asp700I	GAANNNNTTC	2 cut(s)	1503, 1764
AspLEI	GCGC	3 cut(s)	27, 47, 49
AspS9I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 830, 907
AsuC2I	CCSGG	2 cut(s)	362, 551
AsuHPI	GGTGA	5 cut(s)	70, 266, 887, 1366, 1843
AsuII	TTCGAA	1 cut(s)	1732
AsuNHI	GCTAGC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	5 cut(s)	7, 199, 634, 830, 907
AxyI	CCTNAGG	1 cut(s)	1365
BaeGI	GKGCMC	2 cut(s)	223, 1810
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	1374
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	1573
Bbv12I	GWGCWC	2 cut(s)	1374, 1810
BbvI	GCAGC	8 cut(s)	135, 446, 576, 707, 940, 1711, 1894, 2013
BccI	CCATC	2 cut(s)	707, 718
BceAI	ACGGC	3 cut(s)	73, 1820, 1998
BcgI	CGANNNNNNTGC	2 cut(s)	1538, 1572
BciT130I	CCWGG	2 cut(s)	239, 456
BciVI	GTATCC	1 cut(s)	1851
BcnI	CCSGG	2 cut(s)	362, 551
BcoDI	GTCTC	2 cut(s)	25, 1029
BfaI	CTAG	7 cut(s)	96, 317, 494, 803, 857, 888, 1877
BfmI	CTRYAG	2 cut(s)	1697, 1790
BfuI	GTATCC	1 cut(s)	1851
BglII	AGATCT	1 cut(s)	313
Bme1390I	CCNGG	4 cut(s)	239, 362, 456, 551
Bme18I	GGWCC	5 cut(s)	7, 199, 634, 830, 907
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 830, 907
BmiI	GGNNCC	3 cut(s)	74, 133, 615
BmrFI	CCNGG	4 cut(s)	239, 362, 456, 551
BmsI	GCATC	4 cut(s)	892, 1104, 1936, 2095
BmtI	GCTAGC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	1573
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	1732
BpuMI	CCSGG	2 cut(s)	362, 551
BsaHI	GRCGYC	3 cut(s)	39, 86, 1022
BsaJI	CCNNGG	8 cut(s)	68, 152, 237, 238, 549, 772, 1290, 1542
BsaWI	WCCGGW	1 cut(s)	1110
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 842
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	6 cut(s)	202, 524, 617, 1183, 1844, 1920
Bse21I	CCTNAGG	1 cut(s)	1365
Bse3DI	GCAATG	6 cut(s)	258, 354, 425, 914, 1454, 1724
BseBI	CCWGG	2 cut(s)	239, 456
BseDI	CCNNGG	8 cut(s)	68, 152, 237, 238, 549, 772, 1290, 1542
BseGI	GGATG	5 cut(s)	346, 907, 1119, 1768, 2149
BseLI	CCNNNNNNNGG	2 cut(s)	128, 842
BseMI	GCAATG	6 cut(s)	258, 354, 425, 914, 1454, 1724
BseMII	CTCAG	6 cut(s)	243, 293, 915, 1356, 1410, 2025
BseNI	ACTGG	6 cut(s)	202, 524, 617, 1183, 1844, 1920
BsePI	GCGCGC	1 cut(s)	45
BseRI	GAGGAG	4 cut(s)	292, 909, 1382, 2106
BseSI	GKGCMC	2 cut(s)	223, 1810
BseXI	GCAGC	8 cut(s)	135, 446, 576, 707, 940, 1711, 1894, 2013
BseYI	CCCAGC	2 cut(s)	168, 848
BsgI	GTGCAG	1 cut(s)	1893
Bsh1236I	CGCG	3 cut(s)	25, 47, 154
BshFI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BsiHKAI	GWGCWC	2 cut(s)	1374, 1810
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1111
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	128, 842
BsmAI	GTCTC	2 cut(s)	25, 1029
BsmBI	CGTCTC	2 cut(s)	25, 1029
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	3 cut(s)	1411, 1676, 1949
BsnI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	1732
Bsp1286I	GDGCHC	3 cut(s)	223, 1374, 1810
Bsp143I	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	8 cut(s)	5, 138, 152, 154, 228, 374, 905, 2029
BspANI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BspCNI	CTCAG	6 cut(s)	244, 292, 916, 1357, 1409, 2026
BspFNI	CGCG	3 cut(s)	25, 47, 154
BspHI	TCATGA	1 cut(s)	1753
BspLI	GGNNCC	3 cut(s)	74, 133, 615
BspMAI	CTGCAG	1 cut(s)	1701
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	7 cut(s)	126, 139, 652, 784, 1202, 1318, 1487
BspT104I	TTCGAA	1 cut(s)	1732
BsrDI	GCAATG	6 cut(s)	258, 354, 425, 914, 1454, 1724
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	6 cut(s)	202, 524, 617, 1183, 1844, 1920
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	8 cut(s)	68, 152, 237, 238, 549, 772, 1290, 1542
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
BssNAI	GTATAC	1 cut(s)	1011
BssNI	GRCGYC	3 cut(s)	39, 86, 1022
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	4 cut(s)	68, 772, 1290, 1542
Bst1107I	GTATAC	1 cut(s)	1011
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	239, 456
Bst6I	CTCTTC	2 cut(s)	327, 397
BstACI	GRCGYC	3 cut(s)	39, 86, 1022
BstAPI	GCANNNNNTGC	1 cut(s)	1955
BstBI	TTCGAA	1 cut(s)	1732
BstC8I	GCNNGC	6 cut(s)	43, 47, 97, 194, 432, 1409
BstDEI	CTNAG	8 cut(s)	252, 279, 924, 1037, 1118, 1365, 1396, 2034
BstDSI	CCRYGG	2 cut(s)	68, 152
BstF5I	GGATG	5 cut(s)	346, 907, 1119, 1768, 2149
BstFNI	CGCG	3 cut(s)	25, 47, 154
BstHHI	GCGC	3 cut(s)	27, 47, 49
BstKTI	GATC	9 cut(s)	134, 300, 316, 647, 779, 1210, 1313, 1495, 2040
BstMAI	GTCTC	2 cut(s)	25, 1029
BstMBI	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
BstNI	CCWGG	2 cut(s)	239, 456
BstNSI	RCATGY	1 cut(s)	1108
BstSCI	CCNGG	4 cut(s)	237, 360, 454, 549
BstSFI	CTRYAG	2 cut(s)	1697, 1790
BstSLI	GKGCMC	2 cut(s)	223, 1810
BstUI	CGCG	3 cut(s)	25, 47, 154
BstV1I	GCAGC	8 cut(s)	135, 446, 576, 707, 940, 1711, 1894, 2013
BstV2I	GAAGAC	1 cut(s)	1573
BstX2I	RGATCY	4 cut(s)	131, 313, 776, 1207
BstYI	RGATCY	4 cut(s)	131, 313, 776, 1207
BstZ17I	GTATAC	1 cut(s)	1011
Bsu36I	CCTNAGG	1 cut(s)	1365
BsuI	GTATCC	1 cut(s)	1851
BsuRI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BtgI	CCRYGG	2 cut(s)	68, 152
BtsCI	GGATG	5 cut(s)	346, 907, 1119, 1768, 2149
BtsI	GCAGTG	1 cut(s)	1953
BtsIMutI	CAGTG	9 cut(s)	209, 624, 1492, 1659, 1799, 1810, 1910, 1927, 1953
Cac8I	GCNNGC	6 cut(s)	43, 47, 97, 194, 432, 1409
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	1 cut(s)	1753
CfoI	GCGC	3 cut(s)	27, 47, 49
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 830, 907
Cfr42I	CCGCGG	1 cut(s)	155
CpoI	CGGWCCG	2 cut(s)	7, 907
CseI	GACGC	3 cut(s)	47, 94, 1011
Csp6I	GTAC	3 cut(s)	1063, 1108, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	2098, 2133
CspI	CGGWCCG	2 cut(s)	7, 907
CviAII	CATG	9 cut(s)	69, 210, 592, 678, 1105, 1307, 1468, 1754, 2015
CviQI	GTAC	3 cut(s)	1063, 1108, 1145
DdeI	CTNAG	8 cut(s)	252, 279, 924, 1037, 1118, 1365, 1396, 2034
DpnI	GATC	9 cut(s)	133, 299, 315, 646, 778, 1209, 1312, 1494, 2039
DpnII	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
DraIII	CACNNNGTG	1 cut(s)	2210
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	327, 397
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	2 cut(s)	327, 397
Ecl136II	GAGCTC	1 cut(s)	1372
Eco130I	CCWWGG	4 cut(s)	68, 772, 1290, 1542
Eco24I	GRGCYC	1 cut(s)	1374
Eco47I	GGWCC	5 cut(s)	7, 199, 634, 830, 907
Eco53kI	GAGCTC	1 cut(s)	1372
Eco57I	CTGAAG	3 cut(s)	378, 1049, 1518
Eco81I	CCTNAGG	1 cut(s)	1365
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	1372
EcoO109I	RGGNCCY	2 cut(s)	73, 515
EcoRI	GAATTC	1 cut(s)	1169
EcoRII	CCWGG	2 cut(s)	237, 454
EcoT14I	CCWWGG	4 cut(s)	68, 772, 1290, 1542
EcoT22I	ATGCAT	1 cut(s)	1951
EcoT38I	GRGCYC	1 cut(s)	1374
ErhI	CCWWGG	4 cut(s)	68, 772, 1290, 1542
Esp3I	CGTCTC	2 cut(s)	25, 1029
FaeI	CATG	9 cut(s)	72, 213, 595, 681, 1108, 1310, 1471, 1757, 2018
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	9 cut(s)	68, 209, 591, 677, 1104, 1306, 1467, 1753, 2014
FauNDI	CATATG	2 cut(s)	1129, 1261
FblI	GTMKAC	3 cut(s)	984, 1010, 1123
FokI	GGATG	5 cut(s)	353, 914, 1126, 1755, 2156
FriOI	GRGCYC	1 cut(s)	1374
FspBI	CTAG	7 cut(s)	96, 317, 494, 803, 857, 888, 1877
GlaI	GCGC	3 cut(s)	26, 46, 48
GsaI	CCCAGC	2 cut(s)	172, 852
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	5 cut(s)	75, 257, 377, 454, 516
HapII	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1111
HgaI	GACGC	3 cut(s)	47, 94, 1011
HhaI	GCGC	3 cut(s)	27, 47, 49
Hin1I	GRCGYC	3 cut(s)	39, 86, 1022
Hin1II	CATG	9 cut(s)	72, 213, 595, 681, 1108, 1310, 1471, 1757, 2018
Hin6I	GCGC	3 cut(s)	25, 45, 47
HinP1I	GCGC	3 cut(s)	25, 45, 47
HincII	GTYRAC	3 cut(s)	116, 1124, 2149
HindII	GTYRAC	3 cut(s)	116, 1124, 2149
HindIII	AAGCTT	1 cut(s)	1617
HpaII	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1111
HphI	GGTGA	5 cut(s)	70, 266, 887, 1366, 1843
Hpy99I	CGWCG	2 cut(s)	41, 1428
HpyAV	CCTTC	3 cut(s)	316, 1556, 1754
HpyF3I	CTNAG	8 cut(s)	252, 279, 924, 1037, 1118, 1365, 1396, 2034
Hsp92I	GRCGYC	3 cut(s)	39, 86, 1022
Hsp92II	CATG	9 cut(s)	72, 213, 595, 681, 1108, 1310, 1471, 1757, 2018
HspAI	GCGC	3 cut(s)	25, 45, 47
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
KspI	CCGCGG	1 cut(s)	155
Kzo9I	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
LmnI	GCTCC	5 cut(s)	619, 845, 1369, 1546, 1749
Lsp1109I	GCAGC	8 cut(s)	135, 446, 576, 707, 940, 1711, 1894, 2013
LweI	GCATC	4 cut(s)	892, 1104, 1936, 2095
MaeI	CTAG	7 cut(s)	96, 317, 494, 803, 857, 888, 1877
MaeIII	GTNAC	5 cut(s)	82, 600, 997, 1193, 1654
MalI	GATC	9 cut(s)	133, 299, 315, 646, 778, 1209, 1312, 1494, 2039
MboI	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
MboII	GAAGA	8 cut(s)	344, 384, 410, 596, 1578, 1769, 1968, 2207
MfeI	CAATTG	3 cut(s)	143, 573, 750
MflI	RGATCY	4 cut(s)	131, 313, 776, 1207
MhlI	GDGCHC	3 cut(s)	223, 1374, 1810
MluCI	AATT	9 cut(s)	143, 401, 573, 660, 750, 1169, 1295, 1626, 1665
MlyI	GAGTC	4 cut(s)	344, 819, 1464, 1909
MmeI	TCCRAC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	1951
MreI	CGCCGGCG	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	1503, 1764
MseI	TTAA	3 cut(s)	1419, 1430, 2048
MslI	CAYNNNNRTG	1 cut(s)	1188
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1111
MspR9I	CCNGG	4 cut(s)	239, 362, 456, 551
MunI	CAATTG	3 cut(s)	143, 573, 750
Mva1269I	GAATGC	3 cut(s)	1411, 1676, 1949
MvaI	CCWGG	2 cut(s)	239, 456
MvnI	CGCG	3 cut(s)	25, 47, 154
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	2 cut(s)	362, 551
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	2 cut(s)	1129, 1261
NdeII	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	9 cut(s)	72, 213, 595, 681, 1108, 1310, 1471, 1757, 2018
NlaIV	GGNNCC	3 cut(s)	74, 133, 615
NmuCI	GTSAC	3 cut(s)	82, 1193, 1654
NsiI	ATGCAT	1 cut(s)	1951
NspI	RCATGY	1 cut(s)	1108
NspV	TTCGAA	1 cut(s)	1732
PagI	TCATGA	1 cut(s)	1753
PasI	CCCWGGG	1 cut(s)	238
PauI	GCGCGC	1 cut(s)	45
PciI	ACATGT	1 cut(s)	1104
PctI	GAATGC	3 cut(s)	1411, 1676, 1949
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	1503, 1764
PfeI	GAWTC	6 cut(s)	1085, 1247, 1379, 1435, 1594, 1782
PleI	GAGTC	4 cut(s)	343, 818, 1463, 1908
PpsI	GAGTC	4 cut(s)	343, 818, 1463, 1908
PscI	ACATGT	1 cut(s)	1104
PsiI	TTATAA	1 cut(s)	1623
Psp124BI	GAGCTC	1 cut(s)	1374
Psp6I	CCWGG	2 cut(s)	237, 454
PspFI	CCCAGC	2 cut(s)	168, 848
PspGI	CCWGG	2 cut(s)	237, 454
PspN4I	GGNNCC	3 cut(s)	74, 133, 615
PspPI	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 830, 907
PstI	CTGCAG	1 cut(s)	1701
PstNI	CAGNNNCTG	1 cut(s)	1658
PsuI	RGATCY	4 cut(s)	131, 313, 776, 1207
PteI	GCGCGC	1 cut(s)	45
RsaI	GTAC	3 cut(s)	1064, 1109, 1146
RsaNI	GTAC	3 cut(s)	1063, 1108, 1145
RseI	CAYNNNNRTG	1 cut(s)	1188
Rsr2I	CGGWCCG	2 cut(s)	7, 907
RsrII	CGGWCCG	2 cut(s)	7, 907
SacI	GAGCTC	1 cut(s)	1374
SacII	CCGCGG	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	1122
SaqAI	TTAA	3 cut(s)	1419, 1430, 2048
Sau3AI	GATC	9 cut(s)	131, 297, 313, 644, 776, 1207, 1310, 1492, 2037
Sau96I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 830, 907
SchI	GAGTC	4 cut(s)	344, 819, 1464, 1909
ScrFI	CCNGG	4 cut(s)	239, 362, 456, 551
SduI	GDGCHC	3 cut(s)	223, 1374, 1810
SfaNI	GCATC	4 cut(s)	892, 1104, 1936, 2095
SfcI	CTRYAG	2 cut(s)	1697, 1790
Sfr303I	CCGCGG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	1732
SgrAI	CRCCGGYG	1 cut(s)	41
SgrBI	CCGCGG	1 cut(s)	155
SinI	GGWCC	5 cut(s)	7, 199, 634, 830, 907
SmiMI	CAYNNNNRTG	1 cut(s)	1188
Sse9I	AATT	9 cut(s)	143, 401, 573, 660, 750, 1169, 1295, 1626, 1665
SsiI	CCGC	8 cut(s)	5, 138, 152, 154, 228, 374, 905, 2029
SspMI	CTAG	7 cut(s)	96, 317, 494, 803, 857, 888, 1877
SstI	GAGCTC	1 cut(s)	1374
StyD4I	CCNGG	4 cut(s)	237, 360, 454, 549
StyI	CCWWGG	4 cut(s)	68, 772, 1290, 1542
TaqI	TCGA	5 cut(s)	36, 265, 1123, 1732, 2133
TasI	AATT	9 cut(s)	143, 401, 573, 660, 750, 1169, 1295, 1626, 1665
TatI	WGTACW	2 cut(s)	1062, 1144
TauI	GCSGC	3 cut(s)	154, 231, 377
TfiI	GAWTC	6 cut(s)	1085, 1247, 1379, 1435, 1594, 1782
Tru1I	TTAA	3 cut(s)	1419, 1430, 2048
Tru9I	TTAA	3 cut(s)	1419, 1430, 2048
TscAI	CASTG	9 cut(s)	209, 624, 1492, 1659, 1799, 1810, 1917, 1927, 1960
TseFI	GTSAC	3 cut(s)	82, 1193, 1654
TseI	GCWGC	8 cut(s)	148, 434, 564, 695, 953, 1699, 1907, 2026
Tsp45I	GTSAC	3 cut(s)	82, 1193, 1654
TspGWI	ACGGA	2 cut(s)	1659, 2166
TspRI	CASTG	9 cut(s)	209, 624, 1492, 1659, 1799, 1810, 1917, 1927, 1960
VneI	GTGCAC	1 cut(s)	1806
VpaK11BI	GGWCC	5 cut(s)	7, 199, 634, 830, 907
XapI	RAATTY	3 cut(s)	401, 1169, 1295
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	1 cut(s)	1108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XmiI	GTMKAC	3 cut(s)	984, 1010, 1123
XmnI	GAANNNNTTC	2 cut(s)	1503, 1764
XspI	CTAG	7 cut(s)	96, 317, 494, 803, 857, 888, 1877
Zsp2I	ATGCAT	1 cut(s)	1951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.