Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011378

Physical Location & Seq

Genomic Coordinates Forward (+)

22587505 .. 22590558

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0219300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCGACGCCGACCAAGACGCCCTCACCACGCTCAAGCTCATCTGCAACCTTCGCGGCAGTCTCTGAAAGGTTTTCCAAAAAGTTACAATCTTTTCTTTTCTTTTCTTGTGTTTCAGCATCTGCTTTGAGAGAGAGAAAGAGAATCAAGAGCCAATCGATTCATAGGAGTAAAGCCCAGGAAGTCGATTCTCCGCGATCGCCGGAGCAGATAAAGAAAATCGCATCAGATTTACAGGGTGGTTCTACAACAGTCGAAGCAAAAAGCTTTAATCGTAGGAAGCAGTTATCTCCAGTTGTATTTTACGGGTCTCCACATGGTGTACCTCCAAAGCAACCATCAAGGAAGGAAGTATGGGCTACATTTCCAAGGCAGGAGGAAGCAATGCAGTTTGCCAAACGGCACGAGAATGTTCACGTTTTTAGTTATCAAGATCACTTTAGTGGACAAAGAAGGTTCCTTGTTTCAAGTTATGATGAGTTTTGGAGAAGGTACAAAATTATGGAGTCCAAGTTTCGTCACCATTACGAAGTCATTCAGGAGGGTTTACCATGCCACCTTTATTTTGACCTGGAGTTCAATAAGAAAGACAATGGAAACAGAAATGGAGATGAAATGGTTGATCTTTTAATATCTGTTGTTTTTGAAGCCTTGCTTGAAAAGTATTCTATTCAGGGGAACATGGAATGGATATTGGAACTTGATTCCTCTACTGAAGCAAAGTTCTCTCGTCATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCGCTTCAAAGCTAAGGACATGATGCAGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTGTGAGAAGCTTCTAGTCTGCAAATTTGATCTTGATTGTATAAAGACCCTGCATTTTGATACAGAGGTCAACCCTAGTTTTGGAAAATCGTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGTGCTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

382

Amino Acids

43.49

Weight (kDa)

8.54

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27460
fragaria_vesca	FvH4_3g24980
malus_domestica	MD03G1145900.v1.1 MD11G1164800.v1.1
prunus_persica	Prupe.6G130700_v2.0.a1 Prupe.6G130700_v2.0.a1
pyrus_communis	pycom03g10000 pycom439g00040
rosa_chinensis	RchiOBHm_Chr5g0040981 RchiOBHm_Chr5g0044841 RchiOBHm_Chr5g0045601
rosa_laevigata	RLG00000034301
rosa_multiflora	Rmu_sc0004567.1_g000018
rosa_roxburghii	Rroxscaffold_1G00034820 Rroxscaffold_1G00036200
rosa_rugosa	Rorug05G0219300
rosa_samantha	Rh5AG301100 Rh5CG335200 Rh5DG318500
rosa_wichuraiana	Rw5G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	56, 196
AciI	CCGC	2 cut(s)	56, 194
AcsI	RAATTY	4 cut(s)	811, 935, 1019, 1106
AcuI	CTGAAG	3 cut(s)	735, 885, 1035
AcyI	GRCGYC	3 cut(s)	8, 20, 884
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	324, 494, 1004
AfiI	CCNNNNNNNGG	2 cut(s)	804, 992
AflIII	ACRYGT	1 cut(s)	778
AgsI	TTSAA	6 cut(s)	468, 580, 647, 659, 841, 1030
AjnI	CCWGG	3 cut(s)	177, 570, 1065
AleI	CACNNNNGTG	1 cut(s)	441
AluBI	AGCT	5 cut(s)	39, 267, 845, 922, 1088
AluI	AGCT	5 cut(s)	39, 267, 845, 922, 1088
Alw26I	GTCTC	3 cut(s)	67, 315, 1135
AlwNI	CAGNNNCTG	2 cut(s)	65, 122
AoxI	GGCC	1 cut(s)	1010
ApoI	RAATTY	4 cut(s)	811, 935, 1019, 1106
AsiSI	GCGATCGC	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	1011
AsuHPI	GGTGA	3 cut(s)	18, 512, 787
BaeI	ACNNNNGTAYC	2 cut(s)	963, 996
BauI	CACGAG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	761
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	3 cut(s)	179, 572, 1067
BcoDI	GTCTC	3 cut(s)	67, 315, 1135
BfaI	CTAG	2 cut(s)	926, 987
BfoI	RGCGCY	1 cut(s)	838
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	179, 572, 1067
BmgT120I	GGNCC	1 cut(s)	1011
BmiI	GGNNCC	2 cut(s)	458, 1013
BmrFI	CCNGG	3 cut(s)	179, 572, 1067
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	5 cut(s)	128, 233, 846, 1036, 1084
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	2 cut(s)	276, 593
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	158
BsaHI	GRCGYC	3 cut(s)	8, 20, 884
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	177, 368, 798, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	804, 992
Bse1I	ACTGG	3 cut(s)	293, 835, 1041
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	3 cut(s)	179, 572, 1067
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	4 cut(s)	177, 368, 798, 1066
BseGI	GGATG	1 cut(s)	1099
BseLI	CCNNNNNNNGG	2 cut(s)	804, 992
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	1146
BseNI	ACTGG	3 cut(s)	293, 835, 1041
BseRI	GAGGAG	1 cut(s)	884
Bsh1236I	CGCG	2 cut(s)	56, 196
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	1012
BshVI	ATCGAT	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	804, 992
BsmAI	GTCTC	3 cut(s)	67, 315, 1135
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	1 cut(s)	1012
Bso31I	GGTCTC	1 cut(s)	315
Bsp143I	GATC	5 cut(s)	197, 433, 622, 891, 940
BspACI	CCGC	2 cut(s)	56, 194
BspANI	GGCC	1 cut(s)	1012
BspCNI	CTCAG	1 cut(s)	1145
BspDI	ATCGAT	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	56, 196
BspLI	GGNNCC	2 cut(s)	458, 1013
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	293, 835, 1041
BssECI	CCNNGG	4 cut(s)	177, 368, 798, 1066
BssMI	GATC	5 cut(s)	197, 433, 622, 891, 940
BssNI	GRCGYC	3 cut(s)	8, 20, 884
BssSI	CACGAG	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	3 cut(s)	179, 572, 1067
Bst4CI	ACNGT	2 cut(s)	253, 1007
Bst6I	CTCTTC	1 cut(s)	861
BstACI	GRCGYC	3 cut(s)	8, 20, 884
BstDEI	CTNAG	2 cut(s)	846, 1132
BstF5I	GGATG	1 cut(s)	1099
BstFNI	CGCG	2 cut(s)	56, 196
BstH2I	RGCGCY	1 cut(s)	838
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	5 cut(s)	200, 436, 625, 894, 943
BstMAI	GTCTC	3 cut(s)	67, 315, 1135
BstMBI	GATC	5 cut(s)	197, 433, 622, 891, 940
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 1094
BstNI	CCWGG	3 cut(s)	179, 572, 1067
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	3 cut(s)	177, 570, 1065
BstUI	CGCG	2 cut(s)	56, 196
BstV2I	GAAGAC	1 cut(s)	761
Bsu15I	ATCGAT	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	1012
BsuTUI	ATCGAT	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	1099
BtsIMutI	CAGTG	2 cut(s)	822, 1048
CaiI	CAGNNNCTG	2 cut(s)	65, 122
CfoI	GCGC	1 cut(s)	837
Cfr13I	GGNCC	1 cut(s)	1011
ClaI	ATCGAT	1 cut(s)	158
CseI	GACGC	3 cut(s)	16, 28, 873
Csp6I	GTAC	3 cut(s)	323, 493, 1003
CviAII	CATG	6 cut(s)	317, 552, 682, 779, 853, 880
CviQI	GTAC	3 cut(s)	323, 493, 1003
DdeI	CTNAG	2 cut(s)	846, 1132
DpnI	GATC	5 cut(s)	199, 435, 624, 893, 942
DpnII	GATC	5 cut(s)	197, 433, 622, 891, 940
DraIII	CACNNNGTG	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco130I	CCWWGG	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	315
Eco57I	CTGAAG	3 cut(s)	735, 885, 1035
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	177, 570, 1065
EcoT14I	CCWWGG	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	1099
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	6 cut(s)	320, 555, 685, 782, 856, 883
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FatI	CATG	6 cut(s)	316, 551, 681, 778, 852, 879
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	1106
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	2 cut(s)	926, 987
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	276, 593
HaeII	RGCGCY	1 cut(s)	838
HaeIII	GGCC	1 cut(s)	1012
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	3 cut(s)	16, 28, 873
HhaI	GCGC	1 cut(s)	837
Hin1I	GRCGYC	3 cut(s)	8, 20, 884
Hin1II	CATG	6 cut(s)	320, 555, 685, 782, 856, 883
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HincII	GTYRAC	2 cut(s)	6, 982
HindII	GTYRAC	2 cut(s)	6, 982
HindIII	AAGCTT	2 cut(s)	265, 920
HinfI	GANTC	5 cut(s)	144, 160, 188, 506, 704
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	3 cut(s)	18, 512, 787
Hpy166II	GTNNAC	6 cut(s)	6, 323, 415, 446, 548, 982
Hpy188I	TCNGA	4 cut(s)	67, 229, 753, 865
Hpy188III	TCNNGA	4 cut(s)	148, 431, 539, 944
Hpy8I	GTNNAC	6 cut(s)	6, 323, 415, 446, 548, 982
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	61, 340, 447, 483
HpyCH4III	ACNGT	2 cut(s)	253, 1007
HpyCH4IV	ACGT	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 1094
HpyF3I	CTNAG	2 cut(s)	846, 1132
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	3 cut(s)	8, 20, 884
Hsp92II	CATG	6 cut(s)	320, 555, 685, 782, 856, 883
HspAI	GCGC	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	197, 433, 622, 891, 940
LmnI	GCTCC	1 cut(s)	205
LweI	GCATC	5 cut(s)	128, 233, 846, 1036, 1084
MaeI	CTAG	2 cut(s)	926, 987
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	84, 518, 793
MalI	GATC	5 cut(s)	199, 435, 624, 893, 942
MboI	GATC	5 cut(s)	197, 433, 622, 891, 940
MboII	GAAGA	3 cut(s)	766, 820, 878
MfeI	CAATTG	1 cut(s)	1119
MluCI	AATT	8 cut(s)	498, 738, 811, 898, 935, 1019, 1106, 1119
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	8 cut(s)	34, 336, 370, 535, 718, 793, 862, 970
Mph1103I	ATGCAT	1 cut(s)	1099
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	4 cut(s)	270, 629, 737, 765
MslI	CAYNNNNRTG	3 cut(s)	408, 441, 783
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	179, 572, 1067
MunI	CAATTG	1 cut(s)	1119
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	3 cut(s)	179, 572, 1067
MvnI	CGCG	2 cut(s)	56, 196
MwoI	GCNNNNNNNGC	2 cut(s)	53, 1094
NdeII	GATC	5 cut(s)	197, 433, 622, 891, 940
NlaIII	CATG	6 cut(s)	320, 555, 685, 782, 856, 883
NlaIV	GGNNCC	2 cut(s)	458, 1013
NmuCI	GTSAC	2 cut(s)	518, 793
NsiI	ATGCAT	1 cut(s)	1099
NspI	RCATGY	1 cut(s)	782
OliI	CACNNNNGTG	1 cut(s)	441
PciI	ACATGT	1 cut(s)	778
PctI	GAATGC	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	144, 160, 188, 704
PkrI	GCNGC	1 cut(s)	58
Ple19I	CGATCG	1 cut(s)	200
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PscI	ACATGT	1 cut(s)	778
Psp6I	CCWGG	3 cut(s)	177, 570, 1065
PspGI	CCWGG	3 cut(s)	177, 570, 1065
PspN4I	GGNNCC	2 cut(s)	458, 1013
PspPI	GGNCC	1 cut(s)	1011
PstNI	CAGNNNCTG	2 cut(s)	65, 122
PvuI	CGATCG	1 cut(s)	200
RgaI	GCGATCGC	1 cut(s)	200
RsaI	GTAC	3 cut(s)	324, 494, 1004
RsaNI	GTAC	3 cut(s)	323, 493, 1003
RseI	CAYNNNNRTG	3 cut(s)	408, 441, 783
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	270, 629, 737, 765
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	197, 433, 622, 891, 940
Sau96I	GGNCC	1 cut(s)	1011
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	179, 572, 1067
SfaAI	GCGATCGC	1 cut(s)	200
SfaNI	GCATC	5 cut(s)	128, 233, 846, 1036, 1084
SgfI	GCGATCGC	1 cut(s)	200
SmiMI	CAYNNNNRTG	3 cut(s)	408, 441, 783
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	8 cut(s)	498, 738, 811, 898, 935, 1019, 1106, 1119
SsiI	CCGC	2 cut(s)	56, 194
SspMI	CTAG	2 cut(s)	926, 987
StyD4I	CCNGG	3 cut(s)	177, 570, 1065
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	253, 1007
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	4 cut(s)	5, 158, 186, 255
TasI	AATT	8 cut(s)	498, 738, 811, 898, 935, 1019, 1106, 1119
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	144, 160, 188, 704
Tru1I	TTAA	4 cut(s)	270, 629, 737, 765
Tru9I	TTAA	4 cut(s)	270, 629, 737, 765
TscAI	CASTG	2 cut(s)	822, 1048
TseFI	GTSAC	2 cut(s)	518, 793
Tsp45I	GTSAC	2 cut(s)	518, 793
TspDTI	ATGAA	3 cut(s)	152, 627, 868
TspRI	CASTG	2 cut(s)	822, 1048
XapI	RAATTY	4 cut(s)	811, 935, 1019, 1106
XceI	RCATGY	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	2 cut(s)	926, 987
Zsp2I	ATGCAT	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.