Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011378

Physical Location & Seq

Genomic Coordinates Forward (+)

41633137 .. 41641480

Gene Structure 8344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGGCGGTCCGAGCCACCGTCTCGCGCTTCCCTATCGACGCCGGCGCGCACGAGAACTCCGGCATACCATGGGGCCTCACCGTGACGCCGTTCGCGACCAAAGACGAGAGCGGTCAACCTCCGGCGTACGGATCCGGCGGTCAATTGCTGCCGCGGTGCGAGAACTGCTGGGCTTACTTCAACACTTACTGCGAGCTGGACCAGTGGTCATGGAACTGTGCCCTCTGCGGCAACCCCCAGGGACTTTCCTCTGAGGCCATTGCTCGATACTCTCACCCTCAGTCTTGCCCCGAGATGATCTCCTCCTTCGTAGATCTAGAGCTTCCTGTGGAAGAGTCGGATGAGGCAATGCAACCTCGCCCGGTTTATGTTGCGGCCATTGATTTGTCCTCTTCGGAAGAATTTTTGGAACTTACTAAAAGTGCATTGCTGGCAGCTTTGGAAGCTCTTGGGCCTGGTTCGCTGTTTGGTCTTGCTACCTTTAGCCACAAACTAGGATTGTATGATGTTCAAGGCCCTATACCAGTTGTAAAAAATGTTTTCATTCCCCCGGAAACAGAGGGCAGCCTACCAATTGAGCTTGAAGATGTCATGCCCTTGTTACAGTTCCTGGCTCCAGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTAGAGTCTTTGCCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTATGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGCTGCTGTCGCTGTTCAAGCTGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATACTGATGATTCAACACTTCCACAGGACATGTACCGGATGCTAAGTCGACCATATGCTTTTGGCTGTGTACTGCGATTGAGGACATCATCTGAATTCAAAACTGGTCATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTACGCCACATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTTCAAAACATGGATCAGAACCTCCTATTATACAGATTGCGTTTCAATACACAGTCGTTCTGCCTCCTGAGGAGCTCATCAATTCGGGATTGGTTTCCTCAGTTAGAGGCAAGCATTCTCTTAAACGACGATTAAGGATTCGGACTTTGCAATGTGGAGTCGCCCAAAACATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTCTCTCATTACTTGTTCACAAGGTTATATTAGCCTCCTTGGAGCAAGGGGTTCGGGAAGGAAGACTGTTATTGCACGATTGGCTTGTGATTCTAACAGCTCAATACAATGAAGCTTATAAAATTGTTCACTACAAGAACGGAAGTTCAGTGACTGCCCAAATTGATGTTGCATTCTCACAATGCCCCGAACTGCAGCCTTTACCCCGATTAGTTTTTGCATTGCTTCGAAATCCTCTGCTCCTTTTTCATGAAGAAGGTGTTCATCCCGATTACCGAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCGTGTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAGCATACCCACGCCATTCATTGAGTCGTGCTGCACTGATTACCAGTGGTAGCCCGATATTTTTCCTTGATGCATTCACTGCTCTTATTGTGTTCTATTCTTCAACGGCAGACCCTACTCTACCTTTTCCTCCACCCCATGACTGTTTGCTGCGGACTGAGATCAATAAATTAAAGCAAGAGAGATGTATTACCCCTAAACTCATATTTATCAGAGGAGGGCAGGACGATGCCACAGCTTTTGAAAACTATCTCATCGAGGAACAGGACGTTGATGGAAGTGGTATAACAAGCGTTATGGGTTTTGTTTCCTTTCTTGAAGATATTACACAAAGTGTGTTAGAATACATCAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

714

Amino Acids

79.22

Weight (kDa)

4.86

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_trunk	PF04811	120 - 342	1.4e-23	Sec23/Sec24 trunk domain
Sec23_helical	PF04815	468 - 579	3.7e-14	Sec23/Sec24 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27460
fragaria_vesca	FvH4_3g24980
malus_domestica	MD03G1145900.v1.1 MD11G1164800.v1.1
prunus_persica	Prupe.6G130700_v2.0.a1 Prupe.6G130700_v2.0.a1
pyrus_communis	pycom03g10000 pycom439g00040
rosa_chinensis	RchiOBHm_Chr5g0040981 RchiOBHm_Chr5g0044841 RchiOBHm_Chr5g0045601
rosa_laevigata	RLG00000034301
rosa_multiflora	Rmu_sc0004567.1_g000018
rosa_roxburghii	Rroxscaffold_1G00034820 Rroxscaffold_1G00036200
rosa_rugosa	Rorug05G0219300
rosa_samantha	Rh5AG301100 Rh5CG335200 Rh5DG318500
rosa_wichuraiana	Rw5G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1533
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	3 cut(s)	894, 920, 1033
AccII	CGCG	4 cut(s)	25, 47, 95, 154
AciI	CCGC	9 cut(s)	5, 111, 138, 152, 154, 228, 374, 815, 1939
AclWI	GGATC	6 cut(s)	126, 139, 652, 1112, 1228, 1397
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	401, 1079, 1205
AcuI	CTGAAG	2 cut(s)	959, 1428
AcyI	GRCGYC	3 cut(s)	39, 86, 932
AdeI	CACNNNGTG	1 cut(s)	2120
AfaI	GTAC	4 cut(s)	128, 974, 1019, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	128, 752
AflIII	ACRYGT	1 cut(s)	1014
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	237, 454, 609
Alw21I	GWGCWC	2 cut(s)	1284, 1720
Alw26I	GTCTC	2 cut(s)	25, 939
Alw44I	GTGCAC	1 cut(s)	1716
AlwI	GGATC	6 cut(s)	126, 139, 652, 1112, 1228, 1397
AlwNI	CAGNNNCTG	2 cut(s)	610, 1568
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	5 cut(s)	73, 255, 375, 452, 514
ApaLI	GTGCAC	1 cut(s)	1716
ApeKI	GCWGC	8 cut(s)	148, 434, 564, 695, 863, 1609, 1817, 1936
ApoI	RAATTY	3 cut(s)	401, 1079, 1205
ArsI	GACNNNNNNTTYG	2 cut(s)	1172, 1204
Asp700I	GAANNNNTTC	2 cut(s)	1413, 1674
AspLEI	GCGC	3 cut(s)	27, 47, 49
AspS9I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 740, 817
AsuC2I	CCSGG	2 cut(s)	362, 551
AsuHPI	GGTGA	4 cut(s)	70, 266, 797, 1753
AsuII	TTCGAA	1 cut(s)	1642
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	5 cut(s)	7, 199, 634, 740, 817
AxyI	CCTNAGG	1 cut(s)	1275
BaeGI	GKGCMC	2 cut(s)	223, 1720
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	1284
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	1483
Bbv12I	GWGCWC	2 cut(s)	1284, 1720
BbvI	GCAGC	8 cut(s)	135, 446, 576, 707, 850, 1621, 1804, 1923
BccI	CCATC	2 cut(s)	707, 2054
BceAI	ACGGC	3 cut(s)	73, 1730, 1908
BcgI	CGANNNNNNTGC	2 cut(s)	1448, 1482
BciT130I	CCWGG	3 cut(s)	239, 456, 611
BciVI	GTATCC	1 cut(s)	1761
BcnI	CCSGG	2 cut(s)	362, 551
BcoDI	GTCTC	2 cut(s)	25, 939
BfaI	CTAG	5 cut(s)	317, 494, 767, 798, 1787
BfmI	CTRYAG	2 cut(s)	1607, 1700
BfuI	GTATCC	1 cut(s)	1761
BglII	AGATCT	1 cut(s)	313
Bme1390I	CCNGG	5 cut(s)	239, 362, 456, 551, 611
Bme18I	GGWCC	5 cut(s)	7, 199, 634, 740, 817
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 740, 817
BmiI	GGNNCC	3 cut(s)	74, 133, 615
BmrFI	CCNGG	5 cut(s)	239, 362, 456, 551, 611
BmsI	GCATC	4 cut(s)	802, 1014, 1846, 2005
BpiI	GAAGAC	1 cut(s)	1483
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	834
Bpu14I	TTCGAA	1 cut(s)	1642
BpuMI	CCSGG	2 cut(s)	362, 551
BsaHI	GRCGYC	3 cut(s)	39, 86, 932
BsaJI	CCNNGG	7 cut(s)	68, 152, 237, 238, 549, 1200, 1452
BsaWI	WCCGGW	1 cut(s)	1020
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 752
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	6 cut(s)	202, 524, 617, 1093, 1754, 1830
Bse21I	CCTNAGG	1 cut(s)	1275
Bse3DI	GCAATG	6 cut(s)	258, 354, 425, 824, 1364, 1634
BseBI	CCWGG	3 cut(s)	239, 456, 611
BseDI	CCNNGG	7 cut(s)	68, 152, 237, 238, 549, 1200, 1452
BseGI	GGATG	4 cut(s)	346, 817, 1029, 1678
BseLI	CCNNNNNNNGG	2 cut(s)	128, 752
BseMI	GCAATG	6 cut(s)	258, 354, 425, 824, 1364, 1634
BseMII	CTCAG	6 cut(s)	243, 293, 825, 1266, 1320, 1935
BseNI	ACTGG	6 cut(s)	202, 524, 617, 1093, 1754, 1830
BsePI	GCGCGC	1 cut(s)	45
BseRI	GAGGAG	4 cut(s)	292, 819, 1292, 2016
BseSI	GKGCMC	2 cut(s)	223, 1720
BseXI	GCAGC	8 cut(s)	135, 446, 576, 707, 850, 1621, 1804, 1923
BseYI	CCCAGC	2 cut(s)	168, 758
BsgI	GTGCAG	1 cut(s)	1803
Bsh1236I	CGCG	4 cut(s)	25, 47, 95, 154
BshFI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BsiHKAI	GWGCWC	2 cut(s)	1284, 1720
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1021
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	128, 752
BsmAI	GTCTC	2 cut(s)	25, 939
BsmBI	CGTCTC	2 cut(s)	25, 939
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	3 cut(s)	1321, 1586, 1859
BsnI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	1642
Bsp1286I	GDGCHC	3 cut(s)	223, 1284, 1720
Bsp143I	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
Bsp19I	CCATGG	1 cut(s)	68
Bsp68I	TCGCGA	1 cut(s)	95
BspACI	CCGC	9 cut(s)	5, 111, 138, 152, 154, 228, 374, 815, 1939
BspANI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BspCNI	CTCAG	6 cut(s)	244, 292, 826, 1267, 1319, 1936
BspFNI	CGCG	4 cut(s)	25, 47, 95, 154
BspHI	TCATGA	1 cut(s)	1663
BspLI	GGNNCC	3 cut(s)	74, 133, 615
BspMAI	CTGCAG	1 cut(s)	1611
BspPI	GGATC	6 cut(s)	126, 139, 652, 1112, 1228, 1397
BspT104I	TTCGAA	1 cut(s)	1642
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	6 cut(s)	258, 354, 425, 824, 1364, 1634
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	6 cut(s)	202, 524, 617, 1093, 1754, 1830
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	7 cut(s)	68, 152, 237, 238, 549, 1200, 1452
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
BssNAI	GTATAC	1 cut(s)	921
BssNI	GRCGYC	3 cut(s)	39, 86, 932
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	3 cut(s)	68, 1200, 1452
Bst1107I	GTATAC	1 cut(s)	921
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	3 cut(s)	239, 456, 611
Bst6I	CTCTTC	2 cut(s)	327, 397
BstACI	GRCGYC	3 cut(s)	39, 86, 932
BstAPI	GCANNNNNTGC	1 cut(s)	1865
BstBI	TTCGAA	1 cut(s)	1642
BstC8I	GCNNGC	5 cut(s)	43, 47, 194, 432, 1319
BstDEI	CTNAG	8 cut(s)	252, 279, 834, 947, 1028, 1275, 1306, 1944
BstDSI	CCRYGG	2 cut(s)	68, 152
BstF5I	GGATG	4 cut(s)	346, 817, 1029, 1678
BstFNI	CGCG	4 cut(s)	25, 47, 95, 154
BstHHI	GCGC	3 cut(s)	27, 47, 49
BstKTI	GATC	8 cut(s)	134, 300, 316, 647, 1120, 1223, 1405, 1950
BstMAI	GTCTC	2 cut(s)	25, 939
BstMBI	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
BstNI	CCWGG	3 cut(s)	239, 456, 611
BstNSI	RCATGY	1 cut(s)	1018
BstSCI	CCNGG	5 cut(s)	237, 360, 454, 549, 609
BstSFI	CTRYAG	2 cut(s)	1607, 1700
BstSLI	GKGCMC	2 cut(s)	223, 1720
BstUI	CGCG	4 cut(s)	25, 47, 95, 154
BstV1I	GCAGC	8 cut(s)	135, 446, 576, 707, 850, 1621, 1804, 1923
BstV2I	GAAGAC	1 cut(s)	1483
BstX2I	RGATCY	3 cut(s)	131, 313, 1117
BstYI	RGATCY	3 cut(s)	131, 313, 1117
BstZ17I	GTATAC	1 cut(s)	921
Bsu36I	CCTNAGG	1 cut(s)	1275
BsuI	GTATCC	1 cut(s)	1761
BsuRI	GGCC	5 cut(s)	75, 257, 377, 454, 516
BtgI	CCRYGG	2 cut(s)	68, 152
BtsCI	GGATG	4 cut(s)	346, 817, 1029, 1678
BtsI	GCAGTG	1 cut(s)	1863
BtsIMutI	CAGTG	9 cut(s)	209, 624, 1402, 1569, 1709, 1720, 1820, 1837, 1863
BtuMI	TCGCGA	1 cut(s)	95
Cac8I	GCNNGC	5 cut(s)	43, 47, 194, 432, 1319
CaiI	CAGNNNCTG	2 cut(s)	610, 1568
CciI	TCATGA	1 cut(s)	1663
CfoI	GCGC	3 cut(s)	27, 47, 49
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 740, 817
Cfr42I	CCGCGG	1 cut(s)	155
CpoI	CGGWCCG	2 cut(s)	7, 817
CseI	GACGC	3 cut(s)	47, 94, 921
Csp6I	GTAC	4 cut(s)	127, 973, 1018, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	2008, 2043
CspI	CGGWCCG	2 cut(s)	7, 817
CviAII	CATG	9 cut(s)	69, 210, 592, 678, 1015, 1217, 1378, 1664, 1925
CviQI	GTAC	4 cut(s)	127, 973, 1018, 1055
DdeI	CTNAG	8 cut(s)	252, 279, 834, 947, 1028, 1275, 1306, 1944
DpnI	GATC	8 cut(s)	133, 299, 315, 646, 1119, 1222, 1404, 1949
DpnII	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
DraIII	CACNNNGTG	1 cut(s)	2120
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	327, 397
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	2 cut(s)	327, 397
Ecl136II	GAGCTC	1 cut(s)	1282
Eco130I	CCWWGG	3 cut(s)	68, 1200, 1452
Eco24I	GRGCYC	1 cut(s)	1284
Eco47I	GGWCC	5 cut(s)	7, 199, 634, 740, 817
Eco53kI	GAGCTC	1 cut(s)	1282
Eco57I	CTGAAG	2 cut(s)	959, 1428
Eco81I	CCTNAGG	1 cut(s)	1275
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	1282
EcoO109I	RGGNCCY	2 cut(s)	73, 515
EcoRI	GAATTC	1 cut(s)	1079
EcoRII	CCWGG	3 cut(s)	237, 454, 609
EcoT14I	CCWWGG	3 cut(s)	68, 1200, 1452
EcoT22I	ATGCAT	1 cut(s)	1861
EcoT38I	GRGCYC	1 cut(s)	1284
ErhI	CCWWGG	3 cut(s)	68, 1200, 1452
Esp3I	CGTCTC	2 cut(s)	25, 939
FaeI	CATG	9 cut(s)	72, 213, 595, 681, 1018, 1220, 1381, 1667, 1928
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	9 cut(s)	68, 209, 591, 677, 1014, 1216, 1377, 1663, 1924
FauNDI	CATATG	2 cut(s)	1039, 1171
FblI	GTMKAC	3 cut(s)	894, 920, 1033
FokI	GGATG	4 cut(s)	353, 824, 1036, 1665
FriOI	GRGCYC	1 cut(s)	1284
FspBI	CTAG	5 cut(s)	317, 494, 767, 798, 1787
GlaI	GCGC	3 cut(s)	26, 46, 48
GsaI	CCCAGC	2 cut(s)	172, 762
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	5 cut(s)	75, 257, 377, 454, 516
HapII	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1021
HgaI	GACGC	3 cut(s)	47, 94, 921
HhaI	GCGC	3 cut(s)	27, 47, 49
Hin1I	GRCGYC	3 cut(s)	39, 86, 932
Hin1II	CATG	9 cut(s)	72, 213, 595, 681, 1018, 1220, 1381, 1667, 1928
Hin6I	GCGC	3 cut(s)	25, 45, 47
HinP1I	GCGC	3 cut(s)	25, 45, 47
HincII	GTYRAC	2 cut(s)	116, 1034
HindII	GTYRAC	2 cut(s)	116, 1034
HindIII	AAGCTT	1 cut(s)	1527
HinfI	GANTC	9 cut(s)	335, 720, 995, 1157, 1345, 1365, 1504, 1692, 1810
HpaII	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1021
HphI	GGTGA	4 cut(s)	70, 266, 797, 1753
Hpy188I	TCNGA	9 cut(s)	11, 253, 340, 397, 939, 1078, 1225, 1350, 2000
Hpy99I	CGWCG	2 cut(s)	41, 1338
HpyAV	CCTTC	3 cut(s)	316, 1466, 1664
HpyCH4IV	ACGT	1 cut(s)	2055
HpyF3I	CTNAG	8 cut(s)	252, 279, 834, 947, 1028, 1275, 1306, 1944
HpySE526I	ACGT	1 cut(s)	2055
Hsp92I	GRCGYC	3 cut(s)	39, 86, 932
Hsp92II	CATG	9 cut(s)	72, 213, 595, 681, 1018, 1220, 1381, 1667, 1928
HspAI	GCGC	3 cut(s)	25, 45, 47
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
KspI	CCGCGG	1 cut(s)	155
Kzo9I	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
LmnI	GCTCC	5 cut(s)	619, 755, 1279, 1456, 1659
Lsp1109I	GCAGC	8 cut(s)	135, 446, 576, 707, 850, 1621, 1804, 1923
LweI	GCATC	4 cut(s)	802, 1014, 1846, 2005
MaeI	CTAG	5 cut(s)	317, 494, 767, 798, 1787
MaeII	ACGT	1 cut(s)	2055
MaeIII	GTNAC	5 cut(s)	82, 600, 907, 1103, 1564
MalI	GATC	8 cut(s)	133, 299, 315, 646, 1119, 1222, 1404, 1949
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
MboII	GAAGA	8 cut(s)	344, 384, 410, 596, 1488, 1679, 1878, 2117
MfeI	CAATTG	2 cut(s)	143, 573
MflI	RGATCY	3 cut(s)	131, 313, 1117
MhlI	GDGCHC	3 cut(s)	223, 1284, 1720
MlyI	GAGTC	4 cut(s)	344, 729, 1374, 1819
MmeI	TCCRAC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	1861
MreI	CGCCGGCG	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	1413, 1674
MseI	TTAA	3 cut(s)	1329, 1340, 1958
MslI	CAYNNNNRTG	1 cut(s)	1098
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	7 cut(s)	42, 60, 122, 135, 362, 551, 1021
MspR9I	CCNGG	5 cut(s)	239, 362, 456, 551, 611
MunI	CAATTG	2 cut(s)	143, 573
Mva1269I	GAATGC	3 cut(s)	1321, 1586, 1859
MvaI	CCWGG	3 cut(s)	239, 456, 611
MvnI	CGCG	4 cut(s)	25, 47, 95, 154
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	2 cut(s)	362, 551
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	2 cut(s)	1039, 1171
NdeII	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	9 cut(s)	72, 213, 595, 681, 1018, 1220, 1381, 1667, 1928
NlaIV	GGNNCC	3 cut(s)	74, 133, 615
NmuCI	GTSAC	3 cut(s)	82, 1103, 1564
NruI	TCGCGA	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	1861
NspI	RCATGY	1 cut(s)	1018
NspV	TTCGAA	1 cut(s)	1642
PagI	TCATGA	1 cut(s)	1663
PasI	CCCWGGG	1 cut(s)	238
PauI	GCGCGC	1 cut(s)	45
PciI	ACATGT	1 cut(s)	1014
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	3 cut(s)	1321, 1586, 1859
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	1413, 1674
PfeI	GAWTC	5 cut(s)	995, 1157, 1345, 1504, 1692
Pfl23II	CGTACG	1 cut(s)	126
PleI	GAGTC	4 cut(s)	343, 728, 1373, 1818
PpsI	GAGTC	4 cut(s)	343, 728, 1373, 1818
PscI	ACATGT	1 cut(s)	1014
PsiI	TTATAA	1 cut(s)	1533
Psp124BI	GAGCTC	1 cut(s)	1284
Psp6I	CCWGG	3 cut(s)	237, 454, 609
PspFI	CCCAGC	2 cut(s)	168, 758
PspGI	CCWGG	3 cut(s)	237, 454, 609
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	74, 133, 615
PspPI	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 740, 817
PstI	CTGCAG	1 cut(s)	1611
PstNI	CAGNNNCTG	2 cut(s)	610, 1568
PsuI	RGATCY	3 cut(s)	131, 313, 1117
PteI	GCGCGC	1 cut(s)	45
RruI	TCGCGA	1 cut(s)	95
RsaI	GTAC	4 cut(s)	128, 974, 1019, 1056
RsaNI	GTAC	4 cut(s)	127, 973, 1018, 1055
RseI	CAYNNNNRTG	1 cut(s)	1098
Rsr2I	CGGWCCG	2 cut(s)	7, 817
RsrII	CGGWCCG	2 cut(s)	7, 817
SacI	GAGCTC	1 cut(s)	1284
SacII	CCGCGG	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	1032
SaqAI	TTAA	3 cut(s)	1329, 1340, 1958
Sau3AI	GATC	8 cut(s)	131, 297, 313, 644, 1117, 1220, 1402, 1947
Sau96I	GGNCC	8 cut(s)	7, 73, 199, 452, 515, 634, 740, 817
SchI	GAGTC	4 cut(s)	344, 729, 1374, 1819
ScrFI	CCNGG	5 cut(s)	239, 362, 456, 551, 611
SduI	GDGCHC	3 cut(s)	223, 1284, 1720
SfaNI	GCATC	4 cut(s)	802, 1014, 1846, 2005
SfcI	CTRYAG	2 cut(s)	1607, 1700
Sfr303I	CCGCGG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	1642
SgrAI	CRCCGGYG	1 cut(s)	41
SgrBI	CCGCGG	1 cut(s)	155
SinI	GGWCC	5 cut(s)	7, 199, 634, 740, 817
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SsiI	CCGC	9 cut(s)	5, 111, 138, 152, 154, 228, 374, 815, 1939
SspMI	CTAG	5 cut(s)	317, 494, 767, 798, 1787
SstI	GAGCTC	1 cut(s)	1284
StyD4I	CCNGG	5 cut(s)	237, 360, 454, 549, 609
StyI	CCWWGG	3 cut(s)	68, 1200, 1452
TaiI	ACGT	1 cut(s)	2058
TaqI	TCGA	5 cut(s)	36, 265, 1033, 1642, 2043
TatI	WGTACW	2 cut(s)	972, 1054
TauI	GCSGC	3 cut(s)	154, 231, 377
TfiI	GAWTC	5 cut(s)	995, 1157, 1345, 1504, 1692
Tru1I	TTAA	3 cut(s)	1329, 1340, 1958
Tru9I	TTAA	3 cut(s)	1329, 1340, 1958
TscAI	CASTG	9 cut(s)	209, 624, 1402, 1569, 1709, 1720, 1827, 1837, 1870
TseFI	GTSAC	3 cut(s)	82, 1103, 1564
TseI	GCWGC	8 cut(s)	148, 434, 564, 695, 863, 1609, 1817, 1936
Tsp45I	GTSAC	3 cut(s)	82, 1103, 1564
TspGWI	ACGGA	2 cut(s)	144, 1569
TspRI	CASTG	9 cut(s)	209, 624, 1402, 1569, 1709, 1720, 1827, 1837, 1870
VneI	GTGCAC	1 cut(s)	1716
VpaK11BI	GGWCC	5 cut(s)	7, 199, 634, 740, 817
XapI	RAATTY	3 cut(s)	401, 1079, 1205
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	1 cut(s)	1018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XmiI	GTMKAC	3 cut(s)	894, 920, 1033
XmnI	GAANNNNTTC	2 cut(s)	1413, 1674
XspI	CTAG	5 cut(s)	317, 494, 767, 798, 1787
Zsp2I	ATGCAT	1 cut(s)	1861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.