Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007123

Physical Location & Seq

Genomic Coordinates Forward (+)

9426068 .. 9427492

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTGGAAACGTTACGTCATATGGACCACAAACCCACAAGAGAATTGGACCTGTACGAGTTTTCAACCAAAACCCAAATCTTCCCATTTTTCCAATTTAACTCGGAATCTCTTTCTCCTCATCATTTTCTATTTGTACCTCTCCATCTATATAAATGGCTTCCTTACCAAACACAGAGACACCAAACTCAAATATACACGTACAGAAACAACACAAAAAACATGGAGGAGCTACCACCAGGTTATCGCTTCTACCCAACAGAAGAAGAACTGATCTCCTTCTACCTGCACAACAAGCTCGAAGGGAAGCAAGTAGATACTCGTCGCGTAATCCCGGTTATAGACGTTTACAGCAAAGAGCCATGGGACCTTCCAAAGTTTTCGGGGGAGTTGTGCAATGGAGACAGAGAGCAATGGTTTTTCTTTACACCGAGGCAACAACGAGAAGCTCAAGGAGGGAGGCCCAACAGGACTACTGCCTCTGGGTACTGGAAGGCCACCGGGTCACCTGGCTATGTTTACTCCTCAGATAACAAGGTGATTGGAGTGAAGAAAACCATGGTTTTCTATAAAGACAAAGCTCCAACTGGAAGAAAAACCAAATGGAAGATGAATGTGTATAGAGCCATTGAAGTAGACAACTTAACTAACACTAGTGCTAGTGCTAGCACTAGTACACCCAAGTTGAGGGATGAATTCAGTTTGTGTCGAGTGTACGTTGTATCTGGGAGTGCTCGAGCATTTGACAGACGGCCATTGGAGCCAGTAGTGGCACAACAAAAATTTAGTAACTCTACAGAAGCAAGTACTTCTTCTTTGAAGACTACAATGGTGGACAAAGCAAGCTCATCAGACGAAACTTATTCACATTCCGGAGAGCTTGGTGATCTCCTGGAGACGTCAGCAGGGATTAATAGTAGTAATTGGGAGATTAATGAAGGTTTTGAAGAACCTCTATGGGAATGGGAACAACTAAATTTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

329

Amino Acids

38.14

Weight (kDa)

6.73

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	79 - 208	2.9e-39	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44350 AT3G44350 AT5G22380
fragaria_vesca	FvH4_3g25470
malus_domestica	MD03G1148500.v1.1 MD11G1167900.v1.1
prunus_persica	Prupe.6G134400_v2.0.a1
pyrus_communis	pycom03g10280 pycom11g14010
rosa_chinensis	RchiOBHm_Chr5g0046601 RchiOBHm_Chr5g0046631
rosa_laevigata	RLG00000034423 RLG00000034425
rosa_multiflora	Rmu_sc0003878.1_g000003 Rmu_sc0003878.1_g000016
rosa_roxburghii	Rroxscaffold_1G00034720 Rroxscaffold_1G00034750
rosa_rugosa	Rorug05G0229900 Rorug05G0230200
rosa_samantha	Rh5AG310400 Rh5BG318600 Rh5CG344500 Rh5DG329100
rosa_wichuraiana	Rw5G028930 Rw5G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	872
AclI	AACGTT	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	3 cut(s)	695, 782, 976
AcyI	GRCGYC	1 cut(s)	899
AfaI	GTAC	7 cut(s)	56, 138, 203, 488, 676, 716, 808
AfiI	CCNNNNNNNGG	1 cut(s)	687
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	4 cut(s)	66, 632, 820, 947
AhlI	ACTAGT	2 cut(s)	653, 671
AjnI	CCWGG	3 cut(s)	238, 508, 891
AluBI	AGCT	6 cut(s)	232, 298, 449, 581, 846, 880
AluI	AGCT	6 cut(s)	232, 298, 449, 581, 846, 880
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	3 cut(s)	172, 396, 890
Ama87I	CYCGRG	1 cut(s)	735
Aor13HI	TCCGGA	1 cut(s)	872
AoxI	GGCC	3 cut(s)	461, 495, 752
ApoI	RAATTY	3 cut(s)	695, 782, 976
AseI	ATTAAT	2 cut(s)	912, 933
AspS9I	GGNCC	4 cut(s)	25, 49, 367, 462
AsuC2I	CCSGG	2 cut(s)	335, 502
AsuHPI	GGTGA	3 cut(s)	498, 550, 896
AsuNHI	GCTAGC	1 cut(s)	665
AvaI	CYCGRG	1 cut(s)	735
AvaII	GGWCC	3 cut(s)	25, 49, 367
BbsI	GAAGAC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	736
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	3 cut(s)	240, 510, 893
BcnI	CCSGG	2 cut(s)	335, 502
BcoDI	GTCTC	3 cut(s)	172, 396, 890
BcuI	ACTAGT	2 cut(s)	653, 671
BfaI	CTAG	4 cut(s)	654, 660, 666, 672
BfmI	CTRYAG	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	294
BmcAI	AGTACT	1 cut(s)	808
Bme1390I	CCNGG	5 cut(s)	240, 335, 502, 510, 893
Bme18I	GGWCC	3 cut(s)	25, 49, 367
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	4 cut(s)	25, 49, 367, 462
BmiI	GGNNCC	2 cut(s)	368, 762
BmrFI	CCNGG	5 cut(s)	240, 335, 502, 510, 893
BmtI	GCTAGC	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	335, 502
BsaAI	YACGTR	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	362, 431, 558
BsaWI	WCCGGW	1 cut(s)	872
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse1I	ACTGG	3 cut(s)	494, 592, 764
Bse3DI	GCAATG	2 cut(s)	403, 419
BseAI	TCCGGA	1 cut(s)	872
BseBI	CCWGG	3 cut(s)	240, 510, 893
BseDI	CCNNGG	3 cut(s)	362, 431, 558
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseMI	GCAATG	2 cut(s)	403, 419
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	3 cut(s)	494, 592, 764
BseRI	GAGGAG	3 cut(s)	108, 242, 514
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	463, 497, 754
BsiHKAI	GWGCWC	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	3 cut(s)	335, 501, 873
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmAI	GTCTC	3 cut(s)	172, 396, 890
BsmBI	CGTCTC	1 cut(s)	890
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	463, 497, 754
BsoBI	CYCGRG	1 cut(s)	735
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp13I	TCCGGA	1 cut(s)	872
Bsp143I	GATC	2 cut(s)	273, 886
Bsp19I	CCATGG	2 cut(s)	362, 558
BspANI	GGCC	3 cut(s)	463, 497, 754
BspCNI	CTCAG	1 cut(s)	539
BspEI	TCCGGA	1 cut(s)	872
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	368, 762
BspMI	ACCTGC	1 cut(s)	294
BspOI	GCTAGC	1 cut(s)	669
BsrDI	GCAATG	2 cut(s)	403, 419
BsrI	ACTGG	3 cut(s)	494, 592, 764
BssECI	CCNNGG	3 cut(s)	362, 431, 558
BssMI	GATC	2 cut(s)	273, 886
BssNI	GRCGYC	1 cut(s)	899
BssT1I	CCWWGG	2 cut(s)	362, 558
Bst2UI	CCWGG	3 cut(s)	240, 510, 893
BstACI	GRCGYC	1 cut(s)	899
BstBAI	YACGTR	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	667, 844
BstDEI	CTNAG	1 cut(s)	526
BstDSI	CCRYGG	2 cut(s)	362, 558
BstEII	GGTNACC	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	697
BstFNI	CGCG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	276, 889
BstMAI	GTCTC	3 cut(s)	172, 396, 890
BstMBI	GATC	2 cut(s)	273, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 760
BstNI	CCWGG	3 cut(s)	240, 510, 893
BstPI	GGTNACC	1 cut(s)	504
BstSCI	CCNGG	5 cut(s)	238, 333, 500, 508, 891
BstSFI	CTRYAG	1 cut(s)	795
BstUI	CGCG	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	827
BsuRI	GGCC	3 cut(s)	463, 497, 754
BtgI	CCRYGG	2 cut(s)	362, 558
BtsCI	GGATG	1 cut(s)	697
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	667, 844
Cfr13I	GGNCC	4 cut(s)	25, 49, 367, 462
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	7 cut(s)	55, 137, 202, 487, 675, 715, 807
CviAII	CATG	3 cut(s)	223, 363, 559
CviQI	GTAC	7 cut(s)	55, 137, 202, 487, 675, 715, 807
DdeI	CTNAG	1 cut(s)	526
DpnI	GATC	2 cut(s)	275, 888
DpnII	GATC	2 cut(s)	273, 886
EaeI	YGGCCR	1 cut(s)	752
Eco130I	CCWWGG	2 cut(s)	362, 558
Eco47I	GGWCC	3 cut(s)	25, 49, 367
Eco88I	CYCGRG	1 cut(s)	735
Eco91I	GGTNACC	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	3 cut(s)	238, 508, 891
EcoT14I	CCWWGG	2 cut(s)	362, 558
ErhI	CCWWGG	2 cut(s)	362, 558
Esp3I	CGTCTC	1 cut(s)	890
FaeI	CATG	3 cut(s)	226, 366, 562
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	3 cut(s)	222, 362, 558
FauNDI	CATATG	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	636
FokI	GGATG	1 cut(s)	704
FspBI	CTAG	4 cut(s)	654, 660, 666, 672
GsuI	CTGGAG	1 cut(s)	914
HaeIII	GGCC	3 cut(s)	463, 497, 754
HapII	CCGG	3 cut(s)	335, 501, 873
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	3 cut(s)	226, 366, 562
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	3 cut(s)	335, 501, 873
HphI	GGTGA	3 cut(s)	498, 550, 896
Hpy166II	GTNNAC	6 cut(s)	349, 520, 637, 677, 715, 835
Hpy188I	TCNGA	3 cut(s)	106, 529, 853
Hpy188III	TCNNGA	1 cut(s)	873
Hpy8I	GTNNAC	6 cut(s)	349, 520, 637, 677, 715, 835
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	5 cut(s)	289, 296, 380, 487, 932
HpyCH4IV	ACGT	6 cut(s)	11, 16, 200, 345, 717, 899
HpyCH4V	TGCA	2 cut(s)	289, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 760
HpyF3I	CTNAG	1 cut(s)	526
HpySE526I	ACGT	6 cut(s)	11, 16, 200, 345, 717, 899
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	3 cut(s)	226, 366, 562
Kpn2I	TCCGGA	1 cut(s)	872
Kzo9I	GATC	2 cut(s)	273, 886
LmnI	GCTCC	3 cut(s)	229, 586, 760
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	4 cut(s)	654, 660, 666, 672
MaeII	ACGT	6 cut(s)	11, 16, 200, 345, 717, 899
MaeIII	GTNAC	3 cut(s)	12, 504, 788
MalI	GATC	2 cut(s)	275, 888
MboI	GATC	2 cut(s)	273, 886
MboII	GAAGA	9 cut(s)	73, 275, 278, 562, 603, 619, 804, 832, 959
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	6 cut(s)	44, 95, 695, 782, 922, 976
MmeI	TCCRAC	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	872
MseI	TTAA	4 cut(s)	99, 644, 912, 933
MspI	CCGG	3 cut(s)	335, 501, 873
MspR9I	CCNGG	5 cut(s)	240, 335, 502, 510, 893
MvaI	CCWGG	3 cut(s)	240, 510, 893
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	295, 760
NciI	CCSGG	2 cut(s)	335, 502
NcoI	CCATGG	2 cut(s)	362, 558
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	2 cut(s)	273, 886
NheI	GCTAGC	1 cut(s)	665
NlaIII	CATG	3 cut(s)	226, 366, 562
NlaIV	GGNNCC	2 cut(s)	368, 762
NmuCI	GTSAC	1 cut(s)	504
PaeR7I	CTCGAG	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	891
Ppu21I	YACGTR	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	367
PshBI	ATTAAT	2 cut(s)	912, 933
Psp1406I	AACGTT	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	3 cut(s)	238, 508, 891
PspEI	GGTNACC	1 cut(s)	504
PspGI	CCWGG	3 cut(s)	238, 508, 891
PspN4I	GGNNCC	2 cut(s)	368, 762
PspPI	GGNCC	4 cut(s)	25, 49, 367, 462
PspPPI	RGGWCCY	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	735
RsaI	GTAC	7 cut(s)	56, 138, 203, 488, 676, 716, 808
RsaNI	GTAC	7 cut(s)	55, 137, 202, 487, 675, 715, 807
SaqAI	TTAA	4 cut(s)	99, 644, 912, 933
Sau3AI	GATC	2 cut(s)	273, 886
Sau96I	GGNCC	4 cut(s)	25, 49, 367, 462
ScaI	AGTACT	1 cut(s)	808
ScrFI	CCNGG	5 cut(s)	240, 335, 502, 510, 893
SduI	GDGCHC	1 cut(s)	736
SexAI	ACCWGGT	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	795
Sfr274I	CTCGAG	1 cut(s)	735
SinI	GGWCC	3 cut(s)	25, 49, 367
SlaI	CTCGAG	1 cut(s)	735
SmlI	CTYRAG	2 cut(s)	450, 735
SmoI	CTYRAG	2 cut(s)	450, 735
SpeI	ACTAGT	2 cut(s)	653, 671
Sse9I	AATT	6 cut(s)	44, 95, 695, 782, 922, 976
SspMI	CTAG	4 cut(s)	654, 660, 666, 672
StyD4I	CCNGG	5 cut(s)	238, 333, 500, 508, 891
StyI	CCWWGG	2 cut(s)	362, 558
TaiI	ACGT	6 cut(s)	14, 19, 203, 348, 720, 902
TaqI	TCGA	3 cut(s)	300, 709, 736
TasI	AATT	6 cut(s)	44, 95, 695, 782, 922, 976
TatI	WGTACW	2 cut(s)	674, 806
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	4 cut(s)	99, 644, 912, 933
Tru9I	TTAA	4 cut(s)	99, 644, 912, 933
TseFI	GTSAC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	3 cut(s)	626, 708, 951
VpaK11BI	GGWCC	3 cut(s)	25, 49, 367
VspI	ATTAAT	2 cut(s)	912, 933
XapI	RAATTY	3 cut(s)	695, 782, 976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	735
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	4 cut(s)	654, 660, 666, 672
ZraI	GACGTC	1 cut(s)	900
ZrmI	AGTACT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.