Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012760

Physical Location & Seq

Genomic Coordinates Forward (+)

9479143 .. 9479711

Gene Structure 569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAATCGAAAAAGAGTGGAGAAGTAGTAGCCATTAGTACCGGCGAAAAGGCGAATTCCAGTGCCAAAGGAAAGGCTGCTGATCAAGGTGCTCCTCCTGCTGCTGCTGCTGCTGCAGTCACCGCAAAAGCTACCAAAATCAGGACTATGGGAGGAGGATGGAAAAAGGGTCTGGCGATCATAGACATTGTGCTGCGGCTTGGTGCCGGTTCAGCTGCTGTTGCTGCGGCTTACATTGCAGGGAATACTGAACAGATTCTTCCTTTCTTCACACAGTTCTTCCAGTTCCATGCTGAGTATAATGATCTTCCAACTTTCGCGTTTTTTGTTGTTGCAAATGCAGTAGCTGTGGCATACATAGGGTTCTCCTTGCCCTTCTCTATAATCTGCATTATTCGACCTCATGCAATAGGCCCAAGGCTACTACTCGTTATCCTTGACACGGTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

151

Amino Acids

15.57

Weight (kDa)

9.37

Isoelectric Point (pI)

22.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	56 - 150	2.1e-19	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27370
fragaria_vesca	FvH4_3g25570
malus_domestica	MD03G1149400.v1.1 MD11G1168200.v1.1
prunus_persica	Prupe.6G135300_v2.0.a1
pyrus_communis	pycom03g10330 pycom11g14050
rosa_chinensis	RchiOBHm_Chr5g0046421
rosa_laevigata	RLG00000034409 RLG00000034410
rosa_multiflora	Rmu_sc0003878.1_g000049
rosa_roxburghii	Rroxscaffold_1G00034980
rosa_rugosa	Rorug05G0227900
rosa_samantha	Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500
rosa_wichuraiana	Rw0G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	1 cut(s)	320
AciI	CCGC	3 cut(s)	123, 196, 227
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	141, 442
AluBI	AGCT	3 cut(s)	131, 215, 347
AluI	AGCT	3 cut(s)	131, 215, 347
Alw21I	GWGCWC	1 cut(s)	94
AlwNI	CAGNNNCTG	2 cut(s)	218, 347
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	9 cut(s)	77, 101, 104, 107, 110, 113, 193, 215, 224
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	9 cut(s)	64, 88, 91, 94, 97, 100, 180, 202, 211
BccI	CCATC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 442
Bse118I	RCCGGY	2 cut(s)	41, 206
Bse1I	ACTGG	2 cut(s)	60, 283
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	141, 442
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	60, 283
BseRI	GAGGAG	2 cut(s)	84, 168
BseXI	GCAGC	9 cut(s)	64, 88, 91, 94, 97, 100, 180, 202, 211
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	42, 207
BslI	CCNNNNNNNGG	2 cut(s)	141, 442
BsnI	GGCC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	82, 177, 304
BspACI	CCGC	3 cut(s)	123, 196, 227
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	41, 206
BsrI	ACTGG	2 cut(s)	60, 283
BssAI	RCCGGY	2 cut(s)	41, 206
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	3 cut(s)	82, 177, 304
BssT1I	CCWWGG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	276, 445
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	3 cut(s)	85, 180, 307
BstMBI	GATC	3 cut(s)	82, 177, 304
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 107, 110, 113, 122, 212, 221, 224, 236
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	9 cut(s)	64, 88, 91, 94, 97, 100, 180, 202, 211
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	67
CaiI	CAGNNNCTG	2 cut(s)	218, 347
Cfr10I	RCCGGY	2 cut(s)	41, 206
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	290, 404
CviJI	RGCY	9 cut(s)	32, 77, 131, 199, 215, 230, 347, 414, 421
CviKI_1	RGCY	9 cut(s)	32, 77, 131, 199, 215, 230, 347, 414, 421
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	84, 179, 306
DpnII	GATC	3 cut(s)	82, 177, 304
Eco130I	CCWWGG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	2 cut(s)	293, 407
FaiI	YATR	9 cut(s)	149, 182, 291, 300, 355, 359, 383, 405, 451
FatI	CATG	2 cut(s)	289, 403
FbaI	TGATCA	1 cut(s)	82
FokI	GGATG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	2 cut(s)	42, 207
Hin1II	CATG	2 cut(s)	293, 407
HinfI	GANTC	2 cut(s)	5, 256
HpaII	CCGG	2 cut(s)	42, 207
HphI	GGTGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	2 cut(s)	276, 445
HpyCH4V	TGCA	6 cut(s)	116, 239, 335, 341, 390, 407
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 107, 110, 113, 122, 212, 221, 224, 236
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	293, 407
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	82, 177, 304
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	55, 73, 111, 127, 158, 220, 225, 296
Lsp1109I	GCAGC	9 cut(s)	64, 88, 91, 94, 97, 100, 180, 202, 211
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	84, 179, 306
MboI	GATC	3 cut(s)	82, 177, 304
MboII	GAAGA	4 cut(s)	251, 259, 271, 299
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	4 cut(s)	105, 146, 149, 411
MroXI	GAANNNNTTC	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	42, 207
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	9 cut(s)	98, 107, 110, 113, 122, 212, 221, 224, 236
NdeII	GATC	3 cut(s)	82, 177, 304
NlaIII	CATG	2 cut(s)	293, 407
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	5, 256
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	2 cut(s)	218, 347
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	82, 177, 304
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	5 cut(s)	91, 133, 217, 349, 403
SfcI	CTRYAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	3 cut(s)	123, 196, 227
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	276, 445
TaqI	TCGA	2 cut(s)	8, 397
TasI	AATT	1 cut(s)	55
TauI	GCSGC	2 cut(s)	199, 230
TfiI	GAWTC	2 cut(s)	5, 256
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	9 cut(s)	77, 101, 104, 107, 110, 113, 193, 215, 224
Tsp45I	GTSAC	1 cut(s)	118
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.