pycom03g18340

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
19315456 .. 19318520
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18340.9

Sequence Viewer

Length: 1845 bp
ATGACTTTAACACACGCAACAATCAAAGTTTGGTTTTTGCACATCAGAAACTCAAAAGGGGAGCCTCTACAGGCAGCTCGAGCAGCCAAAGATCTTATCAGTACGGATCAATTGCGAGCAATTCTTGGACTACAGACGTGGGAAGAGGTGTTGTTAGTCGTTGAGATTGGAACTCAGAGTCATGTTCCAATTATTTCTTTAGCTGATGCAACTCCAAAGTGGGCAACTGAGCAGTGGAGCTTTCTAGTTCAAGCTTCACCAAATCAGTTAAAGCAGATCGAAGCTGTAGCAGCTATGATTCAATTTTGGGAGTGGAATCAAGTCACCGTAATCTATGAAAACACAGATTTTTCAGCCTTTGTAGTTACAAGTCATCTATCCAAGGCTCTTAAACATGTAGGCGCAGAAATTGTCTATTATGTAGCTCTCGCGCCTTTTGCTTCTTCTTCATTGTCTCATCAGCTCGATAGGCTGAAGAGCAGCCAATGTAGGGTGTTTGTTGTCCACCTGTCTTTAGCAGTGGCGGTGCAGCTATTTGAGAGGGCAAAAAGAATGAAACTGATGAAAAAGGATTGTCTGGATCGCCACCGATATCCCTTTACAAGCCTTGTCCATTCTTTCAATGCCACTACCATCTCCTTAATGCAAGGAATTATTGGAGTCAAACGTTACGTTCACAAAAATAGTAACCATGAACTGAGCACCTTTGCAGTGCATGCTTATGATGCAACATGGGCGGTAGCTCAAGCAACGAGGAAGGAAAAGATGGGAAGCCAACTAATTTTGTCAAGCATTTTGAAAAGTGATTTTCATGGCTTGAGTGGGAAGGTTCAGTTTGCTAACCAAACAATAGCTGCAACTATCGGTGAAAGTGCTACACTTAGCTCTTCGATGAAAGATTCGGCGGGTATAGTCTATTGGCCAGGAGGCGCTCGAAAAACGCCAGTAGGAAGGAGTCCACCGACAAGTGCCTATCCACTTAGAATTGGTGTGCCAACAAGATCAATATTCAGAAACTATGTGAACGTGGAAAGTCTGATACTAATCACAGTTTTTTTTTTTTTTTTTTTTTTCCAATTATTAATGGTGCAGAACTTTGATGCCGAAGTTGGCAGTATGGCAGTACTAGCCAAGAGATATCAACATACAGAATTCAAAGCAACACAAGATAAACATTGGTTATTCACCAAGCCTTTCACAAACGCCATGTGGGTTTTAATAGGAGCCACAAGTCTCTACAATGGATCCTTTAGCACTCTCTTCTCCTTAAATGGAAACAAGTTAAGCAGCAATTTGTCACGGATTGCAATGGTCTTGTGGCTCTTCATGGCACTCGTTATCACACGGACTTACACTGCTAACCTGGCCAACTTGCTCACCTTGCCAAAGCTTGAAATATCCGCTGATCAATACACTCAAGCCGTCAGAAGCAAAGAAATTTCAGCCCTTTTTATTGACCTTGCTTTGGCCAAAATATTTCTTGCAGAATACCGCAAAAACTTTACCATGACTGGACCTACACACAAAGTCGGAGGATTTGGATTTGCATTTCCAACTTGGTTGAAATTGCTTCCTAGCGTAACGCAAGCAATGCTGAAGGTATCTGAAAGTGGTAAGCTCCGAGAGTTGGAAAATGCCATCCTTGCATCCCAGAAGTGCATAGACATGGAACCAGATGATGAACCTCGTAGTCTTAGTCTTAGTCCTAGTTACTTTTGGGTGTTATTTGTGTTCACGGGAGGCACATCTTCGATCGCTCTTGTGATCTACATCTTTTGTGCATGTATGTCTCTGTCTGAACACAAGGTTATCTGGAAGTTAATGACGGTTGTATTGAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

615

Amino Acids

68.8

Weight (kDa)

9.51

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 431
AciI CCGC 5 cut(s) 524, 737, 905, 1401, 1492
AclI AACGTT 1 cut(s) 667
AclWI GGATC 4 cut(s) 114, 588, 1239, 1252
AcoI YGGCCR 3 cut(s) 920, 1365, 1467
AcsI RAATTY 2 cut(s) 1151, 1437
AcuI CTGAAG 2 cut(s) 494, 1616
AfaI GTAC 2 cut(s) 103, 1125
AfiI CCNNNNNNNGG 3 cut(s) 490, 1465, 1627
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 8 cut(s) 251, 302, 622, 799, 1156, 1394, 1564, 1837
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 2 cut(s) 922, 1362
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 3 cut(s) 459, 1238, 1794
AlwI GGATC 4 cut(s) 114, 588, 1239, 1252
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 3 cut(s) 920, 1365, 1467
ApeKI GCWGC 7 cut(s) 74, 83, 290, 480, 529, 854, 1287
ApoI RAATTY 2 cut(s) 1151, 1437
AseI ATTAAT 1 cut(s) 1082
AspLEI GCGC 3 cut(s) 404, 433, 932
AspS9I GGNCC 1 cut(s) 1514
AsuHPI GGTGA 5 cut(s) 249, 316, 878, 1177, 1369
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 1514
BalI TGGCCA 3 cut(s) 922, 1367, 1469
BamHI GGATCC 1 cut(s) 1244
Bbv12I GWGCWC 1 cut(s) 704
BbvI GCAGC 7 cut(s) 86, 95, 302, 492, 541, 841, 1299
BccI CCATC 3 cut(s) 641, 760, 1646
BceAI ACGGC 1 cut(s) 1406
BciT130I CCWGG 2 cut(s) 924, 1364
BclI TGATCA 1 cut(s) 1405
BcoDI GTCTC 3 cut(s) 459, 1238, 1794
BfaI CTAG 4 cut(s) 245, 1127, 1575, 1707
BfmI CTRYAG 3 cut(s) 68, 131, 285
BfoI RGCGCY 1 cut(s) 933
BglII AGATCT 1 cut(s) 91
BisI GCNGC 7 cut(s) 75, 84, 291, 481, 530, 855, 1288
BlsI GCNGC 7 cut(s) 76, 85, 292, 482, 531, 856, 1289
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 2 cut(s) 924, 1364
Bme18I GGWCC 1 cut(s) 1514
BmeT110I CYCGRG 1 cut(s) 78
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 1514
BmiI GGNNCC 4 cut(s) 63, 1225, 1246, 1671
BmrFI CCNGG 2 cut(s) 924, 1364
BmsI GCATC 4 cut(s) 196, 715, 1090, 1655
BpuEI CTTGAG 3 cut(s) 729, 838, 1401
BsaBI GATNNNNATC 2 cut(s) 1043, 1769
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 490, 1465, 1627
Bse1I ACTGG 2 cut(s) 944, 1516
Bse3DI GCAATG 2 cut(s) 1314, 1596
Bse8I GATNNNNATC 2 cut(s) 1043, 1769
BseBI CCWGG 2 cut(s) 924, 1364
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 1638, 1646
BseJI GATNNNNATC 2 cut(s) 1043, 1769
BseLI CCNNNNNNNGG 3 cut(s) 490, 1465, 1627
BseMI GCAATG 2 cut(s) 1314, 1596
BseMII CTCAG 3 cut(s) 188, 219, 689
BseNI ACTGG 2 cut(s) 944, 1516
BseXI GCAGC 7 cut(s) 86, 95, 302, 492, 541, 841, 1299
BsgI GTGCAG 2 cut(s) 548, 1109
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 1755
BshFI GGCC 3 cut(s) 922, 1367, 1469
BsiEI CGRYCG 1 cut(s) 1755
BsiHKAI GWGCWC 1 cut(s) 704
BsiHKCI CYCGRG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 490, 1465, 1627
BsmAI GTCTC 3 cut(s) 459, 1238, 1794
BsnI GGCC 3 cut(s) 922, 1367, 1469
BsoBI CYCGRG 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 704
Bsp143I GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
BspACI CCGC 5 cut(s) 524, 737, 905, 1401, 1492
BspANI GGCC 3 cut(s) 922, 1367, 1469
BspCNI CTCAG 3 cut(s) 187, 220, 690
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 4 cut(s) 63, 1225, 1246, 1671
BspPI GGATC 4 cut(s) 114, 588, 1239, 1252
BspQI GCTCTTC 3 cut(s) 470, 892, 1328
BsrDI GCAATG 2 cut(s) 1314, 1596
BsrI ACTGG 2 cut(s) 944, 1516
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 2 cut(s) 924, 1364
Bst4CI ACNGT 3 cut(s) 328, 1051, 1828
Bst6I CTCTTC 5 cut(s) 138, 470, 892, 1265, 1328
BstAPI GCANNNNNTGC 2 cut(s) 716, 1591
BstC8I GCNNGC 3 cut(s) 117, 717, 1587
BstDEI CTNAG 7 cut(s) 174, 228, 698, 881, 980, 1694, 1700
BstF5I GGATG 2 cut(s) 1638, 1646
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 933
BstHHI GCGC 3 cut(s) 404, 433, 932
BstKTI GATC 9 cut(s) 94, 109, 279, 583, 1004, 1247, 1408, 1755, 1767
BstMAI GTCTC 3 cut(s) 459, 1238, 1794
BstMBI GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
BstMCI CGRYCG 1 cut(s) 1755
BstNI CCWGG 2 cut(s) 924, 1364
BstNSI RCATGY 3 cut(s) 398, 719, 1785
BstSCI CCNGG 2 cut(s) 922, 1362
BstSFI CTRYAG 3 cut(s) 68, 131, 285
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 7 cut(s) 86, 95, 302, 492, 541, 841, 1299
BstX2I RGATCY 2 cut(s) 91, 1244
BstYI RGATCY 2 cut(s) 91, 1244
BsuRI GGCC 3 cut(s) 922, 1367, 1469
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 1638, 1646
BtsI GCAGTG 4 cut(s) 239, 525, 717, 1353
BtsIMutI CAGTG 4 cut(s) 239, 525, 717, 1353
Cac8I GCNNGC 3 cut(s) 117, 717, 1587
CfoI GCGC 3 cut(s) 404, 433, 932
Cfr13I GGNCC 1 cut(s) 1514
Csp6I GTAC 2 cut(s) 102, 1124
CviQI GTAC 2 cut(s) 102, 1124
DdeI CTNAG 7 cut(s) 174, 228, 698, 881, 980, 1694, 1700
DpnI GATC 9 cut(s) 93, 108, 278, 582, 1003, 1246, 1407, 1754, 1766
DpnII GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
EaeI YGGCCR 3 cut(s) 920, 1365, 1467
Eam1104I CTCTTC 5 cut(s) 138, 470, 892, 1265, 1328
EarI CTCTTC 5 cut(s) 138, 470, 892, 1265, 1328
Eco130I CCWWGG 1 cut(s) 381
Eco32I GATATC 2 cut(s) 593, 1139
Eco47I GGWCC 1 cut(s) 1514
Eco57I CTGAAG 2 cut(s) 494, 1616
Eco88I CYCGRG 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 2 cut(s) 922, 1362
EcoRV GATATC 2 cut(s) 593, 1139
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FauI CCCGC 1 cut(s) 898
FbaI TGATCA 1 cut(s) 1405
Fnu4HI GCNGC 7 cut(s) 75, 84, 291, 481, 530, 855, 1288
FokI GGATG 2 cut(s) 1625, 1633
Fsp4HI GCNGC 7 cut(s) 75, 84, 291, 481, 530, 855, 1288
FspBI CTAG 4 cut(s) 245, 1127, 1575, 1707
GlaI GCGC 3 cut(s) 403, 432, 931
GluI GCNGC 7 cut(s) 75, 84, 291, 481, 530, 855, 1288
HaeII RGCGCY 1 cut(s) 933
HaeIII GGCC 3 cut(s) 922, 1367, 1469
HhaI GCGC 3 cut(s) 404, 433, 932
Hin6I GCGC 3 cut(s) 402, 431, 930
HinP1I GCGC 3 cut(s) 402, 431, 930
HindIII AAGCTT 2 cut(s) 252, 1388
HinfI GANTC 6 cut(s) 178, 298, 316, 660, 899, 955
HphI GGTGA 5 cut(s) 249, 316, 878, 1177, 1369
Hpy166II GTNNAC 5 cut(s) 505, 676, 959, 1024, 1734
Hpy188I TCNGA 9 cut(s) 47, 177, 1013, 1038, 1427, 1532, 1606, 1622, 1798
Hpy188III TCNNGA 2 cut(s) 578, 1813
Hpy8I GTNNAC 5 cut(s) 505, 676, 959, 1024, 1734
HpyAV CCTTC 4 cut(s) 751, 820, 945, 1591
HpyCH4III ACNGT 3 cut(s) 328, 1051, 1828
HpyCH4IV ACGT 4 cut(s) 137, 667, 672, 1026
HpyF3I CTNAG 7 cut(s) 174, 228, 698, 881, 980, 1694, 1700
HpySE526I ACGT 4 cut(s) 137, 667, 672, 1026
HspAI GCGC 3 cut(s) 402, 431, 930
Ksp22I TGATCA 1 cut(s) 1405
Kzo9I GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
LguI GCTCTTC 3 cut(s) 470, 892, 1328
LmnI GCTCC 4 cut(s) 61, 237, 1223, 1623
Lsp1109I GCAGC 7 cut(s) 86, 95, 302, 492, 541, 841, 1299
LweI GCATC 4 cut(s) 196, 715, 1090, 1655
MaeI CTAG 4 cut(s) 245, 1127, 1575, 1707
MaeII ACGT 4 cut(s) 137, 667, 672, 1026
MaeIII GTNAC 7 cut(s) 322, 364, 668, 686, 1296, 1579, 1709
MalI GATC 9 cut(s) 93, 108, 278, 582, 1003, 1246, 1407, 1754, 1766
MboI GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
MboII GAAGA 8 cut(s) 155, 435, 438, 487, 879, 1252, 1315, 1740
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 2 cut(s) 91, 1244
MhlI GDGCHC 1 cut(s) 704
MlsI TGGCCA 3 cut(s) 922, 1367, 1469
MluNI TGGCCA 3 cut(s) 922, 1367, 1469
MlyI GAGTC 3 cut(s) 187, 669, 964
MmeI TCCRAC 3 cut(s) 1510, 1577, 1608
MnlI CCTC 8 cut(s) 75, 139, 534, 747, 920, 1526, 1695, 1733
Mox20I TGGCCA 3 cut(s) 922, 1367, 1469
MscI TGGCCA 3 cut(s) 922, 1367, 1469
MseI TTAA 9 cut(s) 8, 269, 390, 641, 1082, 1217, 1268, 1283, 1820
MslI CAYNNNNRTG 2 cut(s) 720, 1664
Msp20I TGGCCA 3 cut(s) 922, 1367, 1469
MspA1I CMGCKG 1 cut(s) 1403
MspR9I CCNGG 2 cut(s) 924, 1364
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 2 cut(s) 924, 1364
MvnI CGCG 1 cut(s) 431
NdeII GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
NlaIV GGNNCC 4 cut(s) 63, 1225, 1246, 1671
NmuCI GTSAC 2 cut(s) 322, 1296
NspI RCATGY 3 cut(s) 398, 719, 1785
PaeI GCATGC 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 78
PciI ACATGT 1 cut(s) 394
PciSI GCTCTTC 3 cut(s) 470, 892, 1328
PfeI GAWTC 3 cut(s) 298, 316, 899
PkrI GCNGC 7 cut(s) 76, 85, 292, 482, 531, 856, 1289
Ple19I CGATCG 1 cut(s) 1755
PleI GAGTC 3 cut(s) 186, 668, 963
PpsI GAGTC 3 cut(s) 186, 668, 963
PscI ACATGT 1 cut(s) 394
PshBI ATTAAT 1 cut(s) 1082
Psp1406I AACGTT 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 922, 1362
PspGI CCWGG 2 cut(s) 922, 1362
PspN4I GGNNCC 4 cut(s) 63, 1225, 1246, 1671
PspPI GGNCC 1 cut(s) 1514
PspXI VCTCGAGB 1 cut(s) 78
PsuI RGATCY 2 cut(s) 91, 1244
PvuI CGATCG 1 cut(s) 1755
RsaI GTAC 2 cut(s) 103, 1125
RsaNI GTAC 2 cut(s) 102, 1124
RseI CAYNNNNRTG 2 cut(s) 720, 1664
SapI GCTCTTC 3 cut(s) 470, 892, 1328
SaqAI TTAA 9 cut(s) 8, 269, 390, 641, 1082, 1217, 1268, 1283, 1820
SatI GCNGC 7 cut(s) 75, 84, 291, 481, 530, 855, 1288
Sau3AI GATC 9 cut(s) 91, 106, 276, 580, 1001, 1244, 1405, 1752, 1764
Sau96I GGNCC 1 cut(s) 1514
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 3 cut(s) 187, 669, 964
ScrFI CCNGG 2 cut(s) 924, 1364
SduI GDGCHC 1 cut(s) 704
SfaNI GCATC 4 cut(s) 196, 715, 1090, 1655
SfcI CTRYAG 3 cut(s) 68, 131, 285
Sfr274I CTCGAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 1514
SlaI CTCGAG 1 cut(s) 78
SmiMI CAYNNNNRTG 2 cut(s) 720, 1664
SmlI CTYRAG 4 cut(s) 78, 744, 817, 1416
SmoI CTYRAG 4 cut(s) 78, 744, 817, 1416
SphI GCATGC 1 cut(s) 719
SsiI CCGC 5 cut(s) 524, 737, 905, 1401, 1492
SspI AATATT 2 cut(s) 1008, 1476
SspMI CTAG 4 cut(s) 245, 1127, 1575, 1707
StyD4I CCNGG 2 cut(s) 922, 1362
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 3 cut(s) 328, 1051, 1828
TaiI ACGT 4 cut(s) 140, 670, 675, 1029
TaqI TCGA 6 cut(s) 79, 279, 465, 890, 934, 1751
TatI WGTACW 1 cut(s) 1123
TfiI GAWTC 3 cut(s) 298, 316, 899
Tru1I TTAA 9 cut(s) 8, 269, 390, 641, 1082, 1217, 1268, 1283, 1820
Tru9I TTAA 9 cut(s) 8, 269, 390, 641, 1082, 1217, 1268, 1283, 1820
TscAI CASTG 4 cut(s) 239, 525, 717, 1360
TseFI GTSAC 2 cut(s) 322, 1296
TseI GCWGC 7 cut(s) 74, 83, 290, 480, 529, 854, 1287
Tsp45I GTSAC 2 cut(s) 322, 1296
TspDTI ATGAA 9 cut(s) 351, 438, 569, 578, 708, 800, 908, 1315, 1695
TspGWI ACGGA 3 cut(s) 119, 1315, 1360
TspRI CASTG 4 cut(s) 239, 525, 717, 1360
VpaK11BI GGWCC 1 cut(s) 1514
VspI ATTAAT 1 cut(s) 1082
XapI RAATTY 2 cut(s) 1151, 1437
XceI RCATGY 3 cut(s) 398, 719, 1785
XhoI CTCGAG 1 cut(s) 78
XspI CTAG 4 cut(s) 245, 1127, 1575, 1707
ZrmI AGTACT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.