Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010541

Physical Location & Seq

Genomic Coordinates Forward (+)

26119586 .. 26122271

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG221100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCAAGAAGCTCAAGCCATTCTAGGACCACATACATGGGAAGAGACATCATTAGTAGCTGCGGTTGGCAGTGAGAACCACATTCCAATTGTTTCTTTTGCGGAGGATACTCCAAACTGGGCAACAGAGCTCTGGCCCTTCCTAGTTCAAGCTTCTCATAACGAGCTAAAACAAATGGAAGCAGTAGCTGCTATAGTTAAGTCTTTTGAATGGTATCAGGGGGTTATCGGAGTCAAGAGCTTCTTCCCTGAAAGTGAGAGTCCCCAATTTCAGGGTTTTCATCGTAGATTTCGTAAAAGGTTCAGCTCAGAATATCCTGAAGAAGAAAACAATGATCCTGGGGTCTTTGCGGCACAGGCCTATGATGCTGCAAGGGCAGTGGTTCTAGCAGTGACACAAAGGAAACACAATGGGAGGCCCTTGTTGGAAAATATTCTTCGAAGTGATTTTCATGGTTTAAGTGGAAAAATTCAGTTCACTGACCAAAAATTACCACTACAAAAAATGTTCCAGATCATCAATGTTATAGGAAAGAGTTACAGAGAACTCGGATATTGGTCAGATGGATTAGGCTTCACACAAACTATCGGGGGAAATGATACTACCAGTTCATCCATGAAAGATTTTGGATCAGTGTTTTGGCCAGGGGGGACTTTCTATACTCCAAAAGGATGGACTGTATCAACAAGTTCAAAGCCATTGAGAATCGGAGTGCCTACCGGAGCGGCATTCAAACAGTATGCAAATGTAGAAAAAGATCCCTTGGGTAATAAATTCTTATTTGGTGGAATTGCAATTGATCTCTTCAAAGAAACCCTGATCGAGCTGCCTTATCATTTGCCGTATGAATTCTCCCCATTTAATGGCACATATGATTCATTAGTGCAGCAAATTCATTCTAGTGCATTTCCAAGGGGGTCACCATTACTTCCGAGTGTAAATGAAGCAATGCTGAAGGTGGCCGAAAGCGGTAAGCTTCGAGACTTGGAGAACGACATGCTGGCATCTCAGAAATGCTTGGATGCAGAAACAGATGGTAGAACCCCAAGTCTAAGCCCCAGCAGCTTTTGGGTACTATTCACATTCTCAGGAGGGACATCAACAATTGCTCTTCTGGTTTACATTTTCCGCATTTATAAATCGATGCTTAAGCAGAAAACAATCTGGAACTTAATGTTGGCTGTAATCAACCAATGGGGGAATCCAAGTATGCAGAGGTTCTCAAGAAGAGACAGCGACATTAGTCCAGAAACTCCGACACATTCTGCAAATGTCCCTAACTTGCAGGCTCAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

432

Amino Acids

48.3

Weight (kDa)

6.17

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	4 - 71	2.6e-08	Receptor family ligand binding region
ANF_receptor	PF01094	72 - 177	6.3e-08	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18830 FvH4_3g18830 FvH4_3g18830
malus_domestica	MD03G1237700.v1.1 MD03G1237800.v1.1 MD11G1258300.v1.1
prunus_persica	Prupe.4G171700_v2.0.a1 Prupe.4G171800_v2.0.a1 Prupe.4G171900_v2.0.a1
pyrus_communis	pycom03g18340 pycom11g22780
rosa_chinensis	RchiOBHm_Chr5g0031641
rosa_laevigata	RLG00000033331
rosa_roxburghii	Rroxscaffold_1G00048630
rosa_rugosa	Rorug05G0127200
rosa_samantha	Rh5AG221100 Rh5BG220600 Rh5BG220700 Rh5CG244100 Rh5DG225600
rosa_wichuraiana	Rw5G020150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	725
AciI	CCGC	6 cut(s)	62, 101, 350, 725, 969, 1129
AclWI	GGATC	3 cut(s)	329, 637, 752
AcoI	YGGCCR	2 cut(s)	641, 960
AcsI	RAATTY	4 cut(s)	468, 773, 848, 891
AcuI	CTGAAG	2 cut(s)	339, 974
AfaI	GTAC	1 cut(s)	1074
AfiI	CCNNNNNNNGG	2 cut(s)	271, 863
AflII	CTTAAG	1 cut(s)	1148
AgsI	TTSAA	5 cut(s)	149, 209, 693, 733, 808
AjnI	CCWGG	2 cut(s)	337, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	1160, 1192
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	3 cut(s)	38, 975, 1224
AlwI	GGATC	3 cut(s)	329, 637, 752
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	5 cut(s)	134, 357, 416, 641, 960
ApeKI	GCWGC	6 cut(s)	59, 188, 368, 826, 886, 1062
ApoI	RAATTY	4 cut(s)	468, 773, 848, 891
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	26, 135, 417
AsuHPI	GGTGA	1 cut(s)	912
AsuII	TTCGAA	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	6 cut(s)	46, 175, 355, 813, 898, 1074
BccI	CCATC	3 cut(s)	557, 666, 1028
BceAI	ACGGC	1 cut(s)	826
BciT130I	CCWGG	2 cut(s)	339, 645
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	38, 975, 1224
BfaI	CTAG	5 cut(s)	23, 143, 386, 900, 1297
BfmI	CTRYAG	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	1148
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	8 cut(s)	60, 189, 351, 369, 726, 827, 887, 1063
BlsI	GCNGC	8 cut(s)	61, 190, 352, 370, 727, 828, 888, 1064
Bme1390I	CCNGG	2 cut(s)	339, 645
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	26, 135, 417
BmrFI	CCNGG	2 cut(s)	339, 645
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	4 cut(s)	355, 1012, 1013, 1134
BmuI	ACTGGG	1 cut(s)	127
BoxI	GACNNNNGTC	1 cut(s)	1242
Bpu10I	CCTNAGC	1 cut(s)	1290
Bpu14I	TTCGAA	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	1207
Bsa29I	ATCGAT	1 cut(s)	1142
BsaJI	CCNNGG	4 cut(s)	338, 644, 762, 911
BsaWI	WCCGGW	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 863
Bse1I	ACTGG	2 cut(s)	122, 606
Bse3DI	GCAATG	1 cut(s)	954
BseBI	CCWGG	2 cut(s)	339, 645
BseCI	ATCGAT	1 cut(s)	1142
BseDI	CCNNGG	4 cut(s)	338, 644, 762, 911
BseGI	GGATG	3 cut(s)	611, 677, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	271, 863
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	3 cut(s)	321, 1022, 1101
BseNI	ACTGG	2 cut(s)	122, 606
BseXI	GCAGC	6 cut(s)	46, 175, 355, 813, 898, 1074
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	1 cut(s)	905
BshFI	GGCC	5 cut(s)	136, 359, 418, 643, 962
BshVI	ATCGAT	1 cut(s)	1142
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	4 cut(s)	246, 664, 1108, 1259
BslI	CCNNNNNNNGG	2 cut(s)	271, 863
BsmAI	GTCTC	3 cut(s)	38, 975, 1224
BsmFI	GGGAC	4 cut(s)	246, 664, 1108, 1259
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	5 cut(s)	136, 359, 418, 643, 962
Bsp119I	TTCGAA	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
BspACI	CCGC	6 cut(s)	62, 101, 350, 725, 969, 1129
BspANI	GGCC	5 cut(s)	136, 359, 418, 643, 962
BspCNI	CTCAG	3 cut(s)	320, 1021, 1100
BspDI	ATCGAT	1 cut(s)	1142
BspPI	GGATC	3 cut(s)	329, 637, 752
BspQI	GCTCTTC	1 cut(s)	1116
BspT104I	TTCGAA	1 cut(s)	439
BspTI	CTTAAG	1 cut(s)	1148
BsrBI	CCGCTC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	954
BsrI	ACTGG	2 cut(s)	122, 606
BssECI	CCNNGG	4 cut(s)	338, 644, 762, 911
BssMI	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
BssT1I	CCWWGG	2 cut(s)	762, 911
Bst2UI	CCWGG	2 cut(s)	339, 645
Bst4CI	ACNGT	2 cut(s)	679, 738
Bst6I	CTCTTC	4 cut(s)	36, 809, 1116, 1222
BstAFI	CTTAAG	1 cut(s)	1148
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	1002, 1287
BstDEI	CTNAG	5 cut(s)	307, 1008, 1052, 1087, 1290
BstEII	GGTNACC	1 cut(s)	918
BstF5I	GGATG	3 cut(s)	611, 677, 1027
BstKTI	GATC	6 cut(s)	337, 516, 632, 760, 802, 822
BstMAI	GTCTC	3 cut(s)	38, 975, 1224
BstMBI	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 356, 365, 374, 1062
BstNI	CCWGG	2 cut(s)	339, 645
BstNSI	RCATGY	1 cut(s)	1000
BstPAI	GACNNNNGTC	1 cut(s)	1242
BstPI	GGTNACC	1 cut(s)	918
BstSCI	CCNGG	2 cut(s)	337, 643
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	6 cut(s)	46, 175, 355, 813, 898, 1074
BstX2I	RGATCY	1 cut(s)	757
BstXI	CCANNNNNNTGG	2 cut(s)	36, 672
BstYI	RGATCY	1 cut(s)	757
Bsu15I	ATCGAT	1 cut(s)	1142
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	136, 359, 418, 643, 962
BsuTUI	ATCGAT	1 cut(s)	1142
BtsCI	GGATG	3 cut(s)	611, 677, 1027
BtsI	GCAGTG	3 cut(s)	76, 384, 396
BtsIMutI	CAGTG	5 cut(s)	76, 384, 396, 477, 639
Cac8I	GCNNGC	2 cut(s)	1002, 1287
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	26, 135, 417
ClaI	ATCGAT	1 cut(s)	1142
Csp6I	GTAC	1 cut(s)	1073
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	4 cut(s)	36, 452, 616, 997
CviQI	GTAC	1 cut(s)	1073
DdeI	CTNAG	5 cut(s)	307, 1008, 1052, 1087, 1290
DpnI	GATC	6 cut(s)	336, 515, 631, 759, 801, 821
DpnII	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
EaeI	YGGCCR	2 cut(s)	641, 960
Eam1104I	CTCTTC	4 cut(s)	36, 809, 1116, 1222
EarI	CTCTTC	4 cut(s)	36, 809, 1116, 1222
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	762, 911
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	339, 974
Eco91I	GGTNACC	1 cut(s)	918
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	417
EcoO65I	GGTNACC	1 cut(s)	918
EcoRI	GAATTC	1 cut(s)	848
EcoRII	CCWGG	2 cut(s)	337, 643
EcoT14I	CCWWGG	2 cut(s)	762, 911
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	2 cut(s)	762, 911
FaeI	CATG	4 cut(s)	39, 455, 619, 1000
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	4 cut(s)	246, 664, 1108, 1259
FatI	CATG	4 cut(s)	35, 451, 615, 996
FauNDI	CATATG	1 cut(s)	871
Fnu4HI	GCNGC	8 cut(s)	60, 189, 351, 369, 726, 827, 887, 1063
FokI	GGATG	3 cut(s)	598, 684, 1034
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	8 cut(s)	60, 189, 351, 369, 726, 827, 887, 1063
FspBI	CTAG	5 cut(s)	23, 143, 386, 900, 1297
GluI	GCNGC	8 cut(s)	60, 189, 351, 369, 726, 827, 887, 1063
GsaI	CCCAGC	1 cut(s)	1062
HaeIII	GGCC	5 cut(s)	136, 359, 418, 643, 962
HapII	CCGG	1 cut(s)	720
Hin1II	CATG	4 cut(s)	39, 455, 619, 1000
HindIII	AAGCTT	2 cut(s)	150, 974
HinfI	GANTC	5 cut(s)	231, 259, 705, 875, 1201
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	1 cut(s)	912
Hpy166II	GTNNAC	2 cut(s)	477, 1120
Hpy188I	TCNGA	8 cut(s)	230, 310, 551, 562, 710, 933, 1011, 1257
Hpy188III	TCNNGA	8 cut(s)	235, 317, 511, 980, 1089, 1165, 1224, 1247
Hpy8I	GTNNAC	2 cut(s)	477, 1120
HpyAV	CCTTC	2 cut(s)	148, 949
HpyCH4III	ACNGT	2 cut(s)	679, 738
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 356, 365, 374, 1062
HpyF3I	CTNAG	5 cut(s)	307, 1008, 1052, 1087, 1290
Hsp92II	CATG	4 cut(s)	39, 455, 619, 1000
Kzo9I	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
LguI	GCTCTTC	1 cut(s)	1116
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	6 cut(s)	46, 175, 355, 813, 898, 1074
LweI	GCATC	4 cut(s)	355, 1012, 1013, 1134
MaeI	CTAG	5 cut(s)	23, 143, 386, 900, 1297
MaeIII	GTNAC	3 cut(s)	391, 536, 918
MalI	GATC	6 cut(s)	336, 515, 631, 759, 801, 821
MbiI	CCGCTC	1 cut(s)	725
MboI	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
MboII	GAAGA	8 cut(s)	53, 235, 332, 335, 428, 796, 1103, 1239
MfeI	CAATTG	3 cut(s)	87, 795, 1104
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	643
MluNI	TGGCCA	1 cut(s)	643
MlyI	GAGTC	2 cut(s)	240, 268
MmeI	TCCRAC	2 cut(s)	405, 1280
MnlI	CCTC	4 cut(s)	97, 408, 1085, 1209
Mox20I	TGGCCA	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	643
MseI	TTAA	5 cut(s)	198, 458, 861, 1149, 1172
MslI	CAYNNNNRTG	2 cut(s)	34, 900
Msp20I	TGGCCA	1 cut(s)	643
MspCI	CTTAAG	1 cut(s)	1148
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	2 cut(s)	339, 645
MunI	CAATTG	3 cut(s)	87, 795, 1104
Mva1269I	GAATGC	1 cut(s)	728
MvaI	CCWGG	2 cut(s)	339, 645
MwoI	GCNNNNNNNGC	5 cut(s)	188, 356, 365, 374, 1062
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
NlaIII	CATG	4 cut(s)	39, 455, 619, 1000
NmuCI	GTSAC	2 cut(s)	391, 918
NspI	RCATGY	1 cut(s)	1000
NspV	TTCGAA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	1116
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	705, 875, 1201
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	8 cut(s)	61, 190, 352, 370, 727, 828, 888, 1064
PleI	GAGTC	2 cut(s)	239, 267
PpsI	GAGTC	2 cut(s)	239, 267
PshAI	GACNNNNGTC	1 cut(s)	1242
PsiI	TTATAA	1 cut(s)	1137
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	337, 643
PspEI	GGTNACC	1 cut(s)	918
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	2 cut(s)	337, 643
PspPI	GGNCC	3 cut(s)	26, 135, 417
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	1 cut(s)	1074
RsaNI	GTAC	1 cut(s)	1073
RseI	CAYNNNNRTG	2 cut(s)	34, 900
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	1116
SaqAI	TTAA	5 cut(s)	198, 458, 861, 1149, 1172
SatI	GCNGC	8 cut(s)	60, 189, 351, 369, 726, 827, 887, 1063
Sau3AI	GATC	6 cut(s)	334, 513, 629, 757, 799, 819
Sau96I	GGNCC	3 cut(s)	26, 135, 417
SchI	GAGTC	2 cut(s)	240, 268
ScrFI	CCNGG	2 cut(s)	339, 645
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	4 cut(s)	355, 1012, 1013, 1134
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	439
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	34, 900
SmlI	CTYRAG	3 cut(s)	12, 1148, 1222
SmoI	CTYRAG	3 cut(s)	12, 1148, 1222
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	6 cut(s)	62, 101, 350, 725, 969, 1129
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	5 cut(s)	23, 143, 386, 900, 1297
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	337, 643
StyI	CCWWGG	2 cut(s)	762, 911
TaaI	ACNGT	2 cut(s)	679, 738
TaqI	TCGA	4 cut(s)	439, 822, 979, 1142
TauI	GCSGC	2 cut(s)	353, 728
TfiI	GAWTC	3 cut(s)	705, 875, 1201
Tru1I	TTAA	5 cut(s)	198, 458, 861, 1149, 1172
Tru9I	TTAA	5 cut(s)	198, 458, 861, 1149, 1172
TscAI	CASTG	5 cut(s)	76, 384, 396, 484, 639
TseFI	GTSAC	2 cut(s)	391, 918
TseI	GCWGC	6 cut(s)	59, 188, 368, 826, 886, 1062
Tsp45I	GTSAC	2 cut(s)	391, 918
TspDTI	ATGAA	8 cut(s)	269, 440, 600, 632, 861, 867, 884, 957
TspRI	CASTG	5 cut(s)	76, 384, 396, 484, 639
Van91I	CCANNNNNTGG	1 cut(s)	863
Vha464I	CTTAAG	1 cut(s)	1148
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	4 cut(s)	468, 773, 848, 891
XceI	RCATGY	1 cut(s)	1000
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	5 cut(s)	23, 143, 386, 900, 1297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.