pycom03g18800

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0009248
Physical Location & Seq
Forward (+)
19661073 .. 19664855
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGCCTTCATCCCCTAAGTTCTTCCACGCGCGCCAACCTCCCTCCGCTCTCAGACCAACCGTCCTGATCGTCGCCTTTTCCCTCGTAATCGGACTCTCCGGTTTCATCGTCGGAATCGTCTCGGTTCTCCACCCGAGCCAGTACAACTGCCTGATCGGCAGCGCCAGATCGGTGAAGGTGGTTTGGGAAACAAGTGGCGGCGGCGGTACCAGCAGCAGCACTCAAAACGGTCTCGTTTTGGGGGTTGGAGATGGAAATGATGATAACAAGAGGCACAAAGTGATGGGCTTTGTGGGGATTCAAACCGGGTTCCGATCCACGGGTCGCAGACAGTCCTTGAGGAAGACTTGGATGCCGTCCGATGCACTGGGCCTTCAACGCTTGGAAGAAGCCACTGGTTTGGCTTTCAGGTTTGTGATTGGTAAAACCAAGGATAAAGCAGAGATGGCGGAACTCGCCAAAGAGGTGGCTAAATTTGATGATTTCCTGCTATTGGATATTGAAGAGGAGTACAGTAAGCTCCCCTACAAAACGTTGGCTTTCTTCAAAGTTGCCTATGCACTTTATGATGCTGACTTCTATGTTAAAGCTGATGACGACATATACTTAAGGCCAGATCGCCTTTCACTGCTCTTGGCAAAAGAGCGTTCTCACTCTCAGACATACCTTGGGTGCATGAAAAAGGGCCCCGTCTTCACAGACCCAAAGCTTAAGTGGTATGAGCCACTTTCCTATTTGCTTGGAAGCGAGTACTTTCTCCATGCCTATGGTCCAATATATGCTCTTTCTGCTGATGTTGTTGCAAGTTTGGTTGCTCTTAGAAACAACAGTTTTCGAATGTTTAGCAATGAGGATGTCACAATTGGTGCGTGGATGCTTGCAATGAATGTTAACCATGAGAACAATAAAGCATTGTGCTCACAGGAGTGTACACCATCATCAATCGCTGTGTGGGATATTCCGAAGTGCTCTGGGCTCTGCAATCCAGAAACCAAATTGCTAGAACTCCACCAGATGGACAGCTGCTCAAAAACTCCGACGGTGGAATCTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Galactosyl_T

Protein Analysis

353

Amino Acids

38.98

Weight (kDa)

6.67

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 109 - 302 2.4e-48 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 1015
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 2 cut(s) 29, 31
AciI CCGC 5 cut(s) 45, 198, 201, 204, 449
AclI AACGTT 1 cut(s) 533
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 473
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 5 cut(s) 143, 208, 512, 752, 931
AfiI CCNNNNNNNGG 3 cut(s) 319, 493, 1015
AflII CTTAAG 2 cut(s) 607, 710
AgsI TTSAA 4 cut(s) 302, 377, 503, 547
AhdI GACNNNNNGTC 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 925
AluBI AGCT 4 cut(s) 520, 590, 709, 1023
AluI AGCT 4 cut(s) 520, 590, 709, 1023
Alw21I GWGCWC 2 cut(s) 920, 971
Alw26I GTCTC 2 cut(s) 124, 236
AlwI GGATC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 3 cut(s) 370, 611, 685
ApaI GGGCCC 1 cut(s) 689
ApeKI GCWGC 4 cut(s) 159, 213, 216, 1023
ApoI RAATTY 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 31, 33, 164
AspS9I GGNCC 4 cut(s) 370, 685, 686, 770
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 835
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 770
BaeGI GKGCMC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 2 cut(s) 689, 978
BbsI GAAGAC 2 cut(s) 350, 685
Bbv12I GWGCWC 2 cut(s) 920, 971
BbvI GCAGC 4 cut(s) 171, 225, 228, 1010
BccI CCATC 5 cut(s) 245, 277, 439, 943, 1009
BceAI ACGGC 1 cut(s) 340
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 124, 236
BfaI CTAG 1 cut(s) 1001
BfoI RGCGCY 1 cut(s) 165
BfrI CTTAAG 2 cut(s) 607, 710
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 6 cut(s) 160, 199, 202, 214, 217, 1024
BlsI GCNGC 6 cut(s) 161, 200, 203, 215, 218, 1025
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 770
BmeRI GACNNNNNGTC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 4 cut(s) 370, 685, 686, 770
BmiI GGNNCC 4 cut(s) 208, 311, 687, 688
BmrFI CCNGG 1 cut(s) 307
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 4 cut(s) 342, 352, 559, 864
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 2 cut(s) 350, 685
Bpu14I TTCGAA 1 cut(s) 835
BpuEI CTTGAG 1 cut(s) 358
BpuMI CCSGG 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 318, 429, 667
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 493, 1015
Bse1I ACTGG 3 cut(s) 139, 372, 400
Bse3DI GCAATG 2 cut(s) 853, 888
BseDI CCNNGG 3 cut(s) 318, 429, 667
BseGI GGATG 4 cut(s) 8, 357, 859, 879
BseLI CCNNNNNNNGG 3 cut(s) 319, 493, 1015
BseMI GCAATG 2 cut(s) 853, 888
BseMII CTCAG 2 cut(s) 64, 671
BseNI ACTGG 3 cut(s) 139, 372, 400
BsePI GCGCGC 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 689
BseXI GCAGC 4 cut(s) 171, 225, 228, 1010
Bsh1236I CGCG 2 cut(s) 29, 31
BshFI GGCC 3 cut(s) 372, 613, 687
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 920, 971
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 2 cut(s) 99, 306
BslI CCNNNNNNNGG 3 cut(s) 319, 493, 1015
BsmAI GTCTC 2 cut(s) 124, 236
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 372, 613, 687
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 835
Bsp120I GGGCCC 1 cut(s) 685
Bsp1286I GDGCHC 4 cut(s) 689, 920, 971, 978
Bsp1407I TGTACA 1 cut(s) 929
Bsp143I GATC 5 cut(s) 66, 153, 167, 314, 616
BspACI CCGC 5 cut(s) 45, 198, 201, 204, 449
BspANI GGCC 3 cut(s) 372, 613, 687
BspCNI CTCAG 2 cut(s) 63, 670
BspFNI CGCG 2 cut(s) 29, 31
BspLI GGNNCC 4 cut(s) 208, 311, 687, 688
BspPI GGATC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 835
BspT107I GGYRCC 1 cut(s) 206
BspTI CTTAAG 2 cut(s) 607, 710
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 853, 888
BsrGI TGTACA 1 cut(s) 929
BsrI ACTGG 3 cut(s) 139, 372, 400
BssECI CCNNGG 3 cut(s) 318, 429, 667
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 5 cut(s) 66, 153, 167, 314, 616
BssT1I CCWWGG 2 cut(s) 429, 667
Bst4CI ACNGT 6 cut(s) 61, 230, 333, 515, 830, 1042
Bst6I CTCTTC 1 cut(s) 498
BstAFI CTTAAG 2 cut(s) 607, 710
BstAUI TGTACA 1 cut(s) 929
BstBI TTCGAA 1 cut(s) 835
BstC8I GCNNGC 2 cut(s) 31, 879
BstDEI CTNAG 4 cut(s) 15, 50, 657, 818
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 4 cut(s) 8, 357, 859, 879
BstFNI CGCG 2 cut(s) 29, 31
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 3 cut(s) 31, 33, 164
BstKTI GATC 5 cut(s) 69, 156, 170, 317, 619
BstMAI GTCTC 2 cut(s) 124, 236
BstMBI GATC 5 cut(s) 66, 153, 167, 314, 616
BstMWI GCNNNNNNNGC 6 cut(s) 156, 210, 378, 446, 455, 788
BstSCI CCNGG 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 689
BstUI CGCG 2 cut(s) 29, 31
BstV1I GCAGC 4 cut(s) 171, 225, 228, 1010
BstV2I GAAGAC 2 cut(s) 350, 685
BstXI CCANNNNNNTGG 3 cut(s) 400, 466, 767
BsuRI GGCC 3 cut(s) 372, 613, 687
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 4 cut(s) 8, 357, 859, 879
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 3 cut(s) 365, 393, 626
Cac8I GCNNGC 2 cut(s) 31, 879
CfoI GCGC 3 cut(s) 31, 33, 164
Cfr13I GGNCC 4 cut(s) 370, 685, 686, 770
Csp6I GTAC 5 cut(s) 142, 207, 511, 751, 930
CviAII CATG 3 cut(s) 676, 761, 896
CviQI GTAC 5 cut(s) 142, 207, 511, 751, 930
DdeI CTNAG 4 cut(s) 15, 50, 657, 818
DpnI GATC 5 cut(s) 68, 155, 169, 316, 618
DpnII GATC 5 cut(s) 66, 153, 167, 314, 616
DraIII CACNNNGTG 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 498
Eam1105I GACNNNNNGTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 498
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 429, 667
Eco24I GRGCYC 2 cut(s) 689, 978
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 133
EcoO109I RGGNCCY 2 cut(s) 685, 686
EcoT14I CCWWGG 2 cut(s) 429, 667
EcoT38I GRGCYC 2 cut(s) 689, 978
ErhI CCWWGG 2 cut(s) 429, 667
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 3 cut(s) 679, 764, 899
FatI CATG 3 cut(s) 675, 760, 895
Fnu4HI GCNGC 6 cut(s) 160, 199, 202, 214, 217, 1024
FokI GGATG 3 cut(s) 364, 866, 886
FriOI GRGCYC 2 cut(s) 689, 978
Fsp4HI GCNGC 6 cut(s) 160, 199, 202, 214, 217, 1024
FspBI CTAG 1 cut(s) 1001
GlaI GCGC 3 cut(s) 30, 32, 163
GluI GCNGC 6 cut(s) 160, 199, 202, 214, 217, 1024
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 3 cut(s) 372, 613, 687
HapII CCGG 2 cut(s) 99, 306
HhaI GCGC 3 cut(s) 31, 33, 164
Hin1II CATG 3 cut(s) 679, 764, 899
Hin6I GCGC 3 cut(s) 29, 31, 162
HinP1I GCGC 3 cut(s) 29, 31, 162
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 4 cut(s) 93, 114, 298, 1046
HpaI GTTAAC 1 cut(s) 892
HpaII CCGG 2 cut(s) 99, 306
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 892, 930, 932
Hpy188I TCNGA 9 cut(s) 53, 92, 113, 314, 361, 660, 963, 1038, 1051
Hpy188III TCNNGA 2 cut(s) 64, 986
Hpy8I GTNNAC 3 cut(s) 892, 930, 932
Hpy99I CGWCG 3 cut(s) 74, 113, 1042
HpyAV CCTTC 3 cut(s) 15, 169, 383
HpyCH4III ACNGT 6 cut(s) 61, 230, 333, 515, 830, 1042
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 6 cut(s) 365, 560, 675, 803, 881, 981
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 210, 378, 446, 455, 788
HpyF3I CTNAG 4 cut(s) 15, 50, 657, 818
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 3 cut(s) 679, 764, 899
HspAI GCGC 3 cut(s) 29, 31, 162
KpnI GGTACC 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 892
Kzo9I GATC 5 cut(s) 66, 153, 167, 314, 616
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 4 cut(s) 171, 225, 228, 1010
LweI GCATC 4 cut(s) 342, 352, 559, 864
MaeI CTAG 1 cut(s) 1001
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 856
MalI GATC 5 cut(s) 68, 155, 169, 316, 618
MbiI CCGCTC 1 cut(s) 47
MboI GATC 5 cut(s) 66, 153, 167, 314, 616
MboII GAAGA 6 cut(s) 13, 355, 398, 515, 535, 685
MfeI CAATTG 1 cut(s) 861
MhlI GDGCHC 4 cut(s) 689, 920, 971, 978
MluCI AATT 3 cut(s) 473, 861, 995
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 2 cut(s) 91, 226
MnlI CCTC 8 cut(s) 48, 52, 92, 264, 333, 457, 499, 844
MseI TTAA 4 cut(s) 585, 608, 711, 891
MslI CAYNNNNRTG 2 cut(s) 765, 925
MspA1I CMGCKG 1 cut(s) 1023
MspCI CTTAAG 2 cut(s) 607, 710
MspI CCGG 2 cut(s) 99, 306
MspR9I CCNGG 1 cut(s) 307
MunI CAATTG 1 cut(s) 861
MvnI CGCG 2 cut(s) 29, 31
MwoI GCNNNNNNNGC 6 cut(s) 156, 210, 378, 446, 455, 788
NciI CCSGG 1 cut(s) 307
NdeII GATC 5 cut(s) 66, 153, 167, 314, 616
NlaIII CATG 3 cut(s) 679, 764, 899
NlaIV GGNNCC 4 cut(s) 208, 311, 687, 688
NmuCI GTSAC 1 cut(s) 856
NspV TTCGAA 1 cut(s) 835
OliI CACNNNNGTG 1 cut(s) 925
PauI GCGCGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 3 cut(s) 114, 298, 1046
PflMI CCANNNNNTGG 1 cut(s) 1015
PkrI GCNGC 6 cut(s) 161, 200, 203, 215, 218, 1025
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Psp1406I AACGTT 1 cut(s) 533
PspN4I GGNNCC 4 cut(s) 208, 311, 687, 688
PspOMI GGGCCC 1 cut(s) 685
PspPI GGNCC 4 cut(s) 370, 685, 686, 770
PteI GCGCGC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 1023
RsaI GTAC 5 cut(s) 143, 208, 512, 752, 931
RsaNI GTAC 5 cut(s) 142, 207, 511, 751, 930
RseI CAYNNNNRTG 2 cut(s) 765, 925
SaqAI TTAA 4 cut(s) 585, 608, 711, 891
SatI GCNGC 6 cut(s) 160, 199, 202, 214, 217, 1024
Sau3AI GATC 5 cut(s) 66, 153, 167, 314, 616
Sau96I GGNCC 4 cut(s) 370, 685, 686, 770
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 4 cut(s) 689, 920, 971, 978
SfaNI GCATC 4 cut(s) 342, 352, 559, 864
SfuI TTCGAA 1 cut(s) 835
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 2 cut(s) 765, 925
SmlI CTYRAG 3 cut(s) 337, 607, 710
SmoI CTYRAG 3 cut(s) 337, 607, 710
Sse9I AATT 3 cut(s) 473, 861, 995
SsiI CCGC 5 cut(s) 45, 198, 201, 204, 449
SspMI CTAG 1 cut(s) 1001
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 429, 667
TaaI ACNGT 6 cut(s) 61, 230, 333, 515, 830, 1042
TaiI ACGT 1 cut(s) 536
TaqI TCGA 1 cut(s) 835
TasI AATT 3 cut(s) 473, 861, 995
TatI WGTACW 4 cut(s) 141, 510, 750, 929
TauI GCSGC 2 cut(s) 201, 204
TfiI GAWTC 3 cut(s) 114, 298, 1046
Tru1I TTAA 4 cut(s) 585, 608, 711, 891
Tru9I TTAA 4 cut(s) 585, 608, 711, 891
TscAI CASTG 3 cut(s) 372, 400, 633
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 4 cut(s) 159, 213, 216, 1023
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 3 cut(s) 94, 692, 899
TspRI CASTG 3 cut(s) 372, 400, 633
Van91I CCANNNNNTGG 1 cut(s) 1015
Vha464I CTTAAG 2 cut(s) 607, 710
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XspI CTAG 1 cut(s) 1001
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.