Ubiquitin associated domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G26920 |
| fragaria_vesca | FvH4_4g12840 FvH4_4g12840 |
| malus_domestica | MD00G1091100.v1.1 MD04G1022000.v1.1 |
| prunus_persica | Prupe.1G172000_v2.0.a1 Prupe.1G172000_v2.0.a1 |
| pyrus_communis | pycom04g01830 pycom13g29210 |
| rosa_chinensis | RchiOBHm_Chr4g0412341 |
| rosa_laevigata | RLG00000008306 |
| rosa_multiflora | Rmu_co8310085.1_g000001 Rmu_sc0010364.1_g000001 Rmu_sc0024446.1_g000001 Rmu_sc0036305.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00356470 |
| rosa_rugosa | Rorug04G0104700 |
| rosa_samantha | Rh4AG172400 Rh4BG171600 Rh4CG183300 Rh4DG167000 |
| rosa_wichuraiana | Rw4G014410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 971 |
| AarI | CACCTGC | 2 cut(s) | 1259, 1361 |
| Acc36I | ACCTGC | 4 cut(s) | 865, 997, 1259, 1361 |
| AccBSI | CCGCTC | 4 cut(s) | 163, 412, 1547, 1566 |
| AccII | CGCG | 1 cut(s) | 1622 |
| AciI | CCGC | 9 cut(s) | 163, 412, 1047, 1293, 1377, 1547, 1566, 1620, 1622 |
| AclWI | GGATC | 7 cut(s) | 366, 563, 841, 1038, 1051, 1499, 1668 |
| AcsI | RAATTY | 1 cut(s) | 826 |
| AcuI | CTGAAG | 5 cut(s) | 476, 576, 773, 828, 926 |
| AfaI | GTAC | 2 cut(s) | 583, 1163 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 21, 578, 1635, 1652 |
| AflII | CTTAAG | 1 cut(s) | 511 |
| AgeI | ACCGGT | 1 cut(s) | 964 |
| AgsI | TTSAA | 5 cut(s) | 385, 439, 461, 934, 1152 |
| AjnI | CCWGG | 6 cut(s) | 91, 946, 1039, 1207, 1231, 1534 |
| Alw21I | GWGCWC | 3 cut(s) | 172, 1031, 1531 |
| Alw44I | GTGCAC | 1 cut(s) | 1527 |
| AlwI | GGATC | 7 cut(s) | 366, 563, 841, 1038, 1051, 1499, 1668 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 98, 751 |
| Ama87I | CYCGRG | 1 cut(s) | 1629 |
| AoxI | GGCC | 4 cut(s) | 623, 1089, 1445, 1623 |
| ApaLI | GTGCAC | 1 cut(s) | 1527 |
| ApoI | RAATTY | 1 cut(s) | 826 |
| AsiGI | ACCGGT | 1 cut(s) | 964 |
| AspA2I | CCTAGG | 1 cut(s) | 1700 |
| AspLEI | GCGC | 2 cut(s) | 984, 1441 |
| AspS9I | GGNCC | 3 cut(s) | 1009, 1089, 1446 |
| AsuHPI | GGTGA | 8 cut(s) | 347, 497, 525, 578, 858, 938, 1026, 1619 |
| AsuII | TTCGAA | 1 cut(s) | 1650 |
| AvaI | CYCGRG | 1 cut(s) | 1629 |
| AvaII | GGWCC | 1 cut(s) | 1009 |
| AvrII | CCTAGG | 1 cut(s) | 1700 |
| BaeGI | GKGCMC | 2 cut(s) | 1107, 1531 |
| BamHI | GGATCC | 1 cut(s) | 1043 |
| BanII | GRGCYC | 3 cut(s) | 28, 172, 1031 |
| Bbv12I | GWGCWC | 3 cut(s) | 172, 1031, 1531 |
| BccI | CCATC | 3 cut(s) | 583, 1387, 1586 |
| BciT130I | CCWGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| BciVI | GTATCC | 1 cut(s) | 1071 |
| BfaI | CTAG | 3 cut(s) | 1116, 1137, 1701 |
| BfmI | CTRYAG | 4 cut(s) | 705, 743, 918, 1586 |
| BfoI | RGCGCY | 1 cut(s) | 985 |
| BfrI | CTTAAG | 1 cut(s) | 511 |
| BfuAI | ACCTGC | 4 cut(s) | 865, 997, 1259, 1361 |
| BfuI | GTATCC | 1 cut(s) | 1071 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1453 |
| BlnI | CCTAGG | 1 cut(s) | 1700 |
| Bme1390I | CCNGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| Bme18I | GGWCC | 1 cut(s) | 1009 |
| BmeT110I | CYCGRG | 1 cut(s) | 1629 |
| BmgT120I | GGNCC | 3 cut(s) | 1009, 1089, 1446 |
| BmiI | GGNNCC | 3 cut(s) | 963, 1011, 1045 |
| BmrFI | CCNGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| BmsI | GCATC | 8 cut(s) | 154, 179, 527, 872, 966, 1283, 1578, 1622 |
| BpmI | CTGGAG | 1 cut(s) | 1435 |
| Bpu10I | CCTNAGC | 1 cut(s) | 171 |
| Bpu14I | TTCGAA | 1 cut(s) | 1650 |
| BpuEI | CTTGAG | 3 cut(s) | 239, 428, 640 |
| BsaJI | CCNNGG | 8 cut(s) | 273, 353, 1231, 1243, 1303, 1442, 1620, 1700 |
| BsaWI | WCCGGW | 2 cut(s) | 37, 964 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 21, 578, 1635, 1652 |
| Bse118I | RCCGGY | 2 cut(s) | 964, 1091 |
| Bse1I | ACTGG | 8 cut(s) | 568, 800, 890, 1020, 1168, 1367, 1418, 1522 |
| Bse3DI | GCAATG | 1 cut(s) | 252 |
| BseBI | CCWGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| BseDI | CCNNGG | 8 cut(s) | 273, 353, 1231, 1243, 1303, 1442, 1620, 1700 |
| BseGI | GGATG | 2 cut(s) | 676, 1597 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 21, 578, 1635, 1652 |
| BseMI | GCAATG | 1 cut(s) | 252 |
| BseMII | CTCAG | 3 cut(s) | 185, 801, 1329 |
| BseNI | ACTGG | 8 cut(s) | 568, 800, 890, 1020, 1168, 1367, 1418, 1522 |
| BseRI | GAGGAG | 1 cut(s) | 636 |
| BseSI | GKGCMC | 2 cut(s) | 1107, 1531 |
| BseYI | CCCAGC | 1 cut(s) | 1219 |
| Bsh1236I | CGCG | 1 cut(s) | 1622 |
| BshFI | GGCC | 4 cut(s) | 625, 1091, 1447, 1625 |
| BshTI | ACCGGT | 1 cut(s) | 964 |
| BsiHKAI | GWGCWC | 3 cut(s) | 172, 1031, 1531 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1629 |
| BsiSI | CCGG | 4 cut(s) | 38, 965, 1092, 1355 |
| BslFI | GGGAC | 2 cut(s) | 995, 1596 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 21, 578, 1635, 1652 |
| BsmFI | GGGAC | 2 cut(s) | 995, 1596 |
| BsnI | GGCC | 4 cut(s) | 625, 1091, 1447, 1625 |
| BsoBI | CYCGRG | 1 cut(s) | 1629 |
| Bsp119I | TTCGAA | 1 cut(s) | 1650 |
| Bsp1286I | GDGCHC | 5 cut(s) | 28, 172, 1031, 1107, 1531 |
| Bsp143I | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| Bsp19I | CCATGG | 1 cut(s) | 273 |
| BspACI | CCGC | 9 cut(s) | 163, 412, 1047, 1293, 1377, 1547, 1566, 1620, 1622 |
| BspANI | GGCC | 4 cut(s) | 625, 1091, 1447, 1625 |
| BspCNI | CTCAG | 3 cut(s) | 184, 802, 1328 |
| BspFNI | CGCG | 1 cut(s) | 1622 |
| BspHI | TCATGA | 1 cut(s) | 1479 |
| BspLI | GGNNCC | 3 cut(s) | 963, 1011, 1045 |
| BspMAI | CTGCAG | 3 cut(s) | 709, 747, 1590 |
| BspMI | ACCTGC | 4 cut(s) | 865, 997, 1259, 1361 |
| BspPI | GGATC | 7 cut(s) | 366, 563, 841, 1038, 1051, 1499, 1668 |
| BspQI | GCTCTTC | 1 cut(s) | 1478 |
| BspT104I | TTCGAA | 1 cut(s) | 1650 |
| BspTI | CTTAAG | 1 cut(s) | 511 |
| BsrBI | CCGCTC | 4 cut(s) | 163, 412, 1547, 1566 |
| BsrDI | GCAATG | 1 cut(s) | 252 |
| BsrFI | RCCGGY | 2 cut(s) | 964, 1091 |
| BsrI | ACTGG | 8 cut(s) | 568, 800, 890, 1020, 1168, 1367, 1418, 1522 |
| BssAI | RCCGGY | 2 cut(s) | 964, 1091 |
| BssECI | CCNNGG | 8 cut(s) | 273, 353, 1231, 1243, 1303, 1442, 1620, 1700 |
| BssMI | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| BssT1I | CCWWGG | 5 cut(s) | 273, 353, 1303, 1442, 1700 |
| Bst2UI | CCWGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| Bst4CI | ACNGT | 4 cut(s) | 70, 435, 955, 1683 |
| Bst6I | CTCTTC | 2 cut(s) | 749, 1478 |
| BstAFI | CTTAAG | 1 cut(s) | 511 |
| BstBI | TTCGAA | 1 cut(s) | 1650 |
| BstC8I | GCNNGC | 3 cut(s) | 168, 593, 733 |
| BstDEI | CTNAG | 4 cut(s) | 171, 549, 810, 1315 |
| BstDSI | CCRYGG | 2 cut(s) | 273, 1620 |
| BstF5I | GGATG | 2 cut(s) | 676, 1597 |
| BstFNI | CGCG | 1 cut(s) | 1622 |
| BstH2I | RGCGCY | 1 cut(s) | 985 |
| BstHHI | GCGC | 2 cut(s) | 984, 1441 |
| BstKTI | GATC | 7 cut(s) | 361, 490, 571, 836, 1046, 1507, 1663 |
| BstMBI | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 275, 473, 1111, 1125, 1192, 1355, 1453, 1619 |
| BstNI | CCWGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| BstNSI | RCATGY | 1 cut(s) | 1114 |
| BstSCI | CCNGG | 6 cut(s) | 91, 946, 1039, 1207, 1231, 1534 |
| BstSFI | CTRYAG | 4 cut(s) | 705, 743, 918, 1586 |
| BstSLI | GKGCMC | 2 cut(s) | 1107, 1531 |
| BstUI | CGCG | 1 cut(s) | 1622 |
| BstX2I | RGATCY | 2 cut(s) | 1043, 1660 |
| BstYI | RGATCY | 2 cut(s) | 1043, 1660 |
| BsuI | GTATCC | 1 cut(s) | 1071 |
| BsuRI | GGCC | 4 cut(s) | 625, 1091, 1447, 1625 |
| BtgI | CCRYGG | 2 cut(s) | 273, 1620 |
| BtsCI | GGATG | 2 cut(s) | 676, 1597 |
| BtsI | GCAGTG | 2 cut(s) | 93, 199 |
| BtsIMutI | CAGTG | 2 cut(s) | 93, 199 |
| BveI | ACCTGC | 4 cut(s) | 865, 997, 1259, 1361 |
| Cac8I | GCNNGC | 3 cut(s) | 168, 593, 733 |
| CaiI | CAGNNNCTG | 2 cut(s) | 98, 751 |
| CciI | TCATGA | 1 cut(s) | 1479 |
| CfoI | GCGC | 2 cut(s) | 984, 1441 |
| Cfr10I | RCCGGY | 2 cut(s) | 964, 1091 |
| Cfr13I | GGNCC | 3 cut(s) | 1009, 1089, 1446 |
| Cfr42I | CCGCGG | 1 cut(s) | 1623 |
| Csp6I | GTAC | 2 cut(s) | 582, 1162 |
| CspAI | ACCGGT | 1 cut(s) | 964 |
| CviAII | CATG | 7 cut(s) | 182, 205, 274, 318, 1111, 1480, 1561 |
| CviQI | GTAC | 2 cut(s) | 582, 1162 |
| DdeI | CTNAG | 4 cut(s) | 171, 549, 810, 1315 |
| DpnI | GATC | 7 cut(s) | 360, 489, 570, 835, 1045, 1506, 1662 |
| DpnII | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| Eam1104I | CTCTTC | 2 cut(s) | 749, 1478 |
| EarI | CTCTTC | 2 cut(s) | 749, 1478 |
| Ecl136II | GAGCTC | 2 cut(s) | 170, 1029 |
| Eco130I | CCWWGG | 5 cut(s) | 273, 353, 1303, 1442, 1700 |
| Eco24I | GRGCYC | 3 cut(s) | 28, 172, 1031 |
| Eco47I | GGWCC | 1 cut(s) | 1009 |
| Eco53kI | GAGCTC | 2 cut(s) | 170, 1029 |
| Eco57I | CTGAAG | 5 cut(s) | 476, 576, 773, 828, 926 |
| Eco88I | CYCGRG | 1 cut(s) | 1629 |
| EcoICRI | GAGCTC | 2 cut(s) | 170, 1029 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1009 |
| EcoRII | CCWGG | 6 cut(s) | 91, 946, 1039, 1207, 1231, 1534 |
| EcoT14I | CCWWGG | 5 cut(s) | 273, 353, 1303, 1442, 1700 |
| EcoT38I | GRGCYC | 3 cut(s) | 28, 172, 1031 |
| ErhI | CCWWGG | 5 cut(s) | 273, 353, 1303, 1442, 1700 |
| FaeI | CATG | 7 cut(s) | 185, 208, 277, 321, 1114, 1483, 1564 |
| FaqI | GGGAC | 2 cut(s) | 995, 1596 |
| FatI | CATG | 7 cut(s) | 181, 204, 273, 317, 1110, 1479, 1560 |
| FokI | GGATG | 2 cut(s) | 683, 1604 |
| FriOI | GRGCYC | 3 cut(s) | 28, 172, 1031 |
| FspBI | CTAG | 3 cut(s) | 1116, 1137, 1701 |
| GlaI | GCGC | 2 cut(s) | 983, 1440 |
| GsaI | CCCAGC | 1 cut(s) | 1223 |
| GsuI | CTGGAG | 1 cut(s) | 1435 |
| HaeII | RGCGCY | 1 cut(s) | 985 |
| HaeIII | GGCC | 4 cut(s) | 625, 1091, 1447, 1625 |
| HapII | CCGG | 4 cut(s) | 38, 965, 1092, 1355 |
| HhaI | GCGC | 2 cut(s) | 984, 1441 |
| Hin1II | CATG | 7 cut(s) | 185, 208, 277, 321, 1114, 1483, 1564 |
| Hin6I | GCGC | 2 cut(s) | 982, 1439 |
| HinP1I | GCGC | 2 cut(s) | 982, 1439 |
| HincII | GTYRAC | 1 cut(s) | 822 |
| HindII | GTYRAC | 1 cut(s) | 822 |
| HindIII | AAGCTT | 3 cut(s) | 215, 508, 593 |
| HinfI | GANTC | 6 cut(s) | 52, 308, 530, 725, 838, 1226 |
| HpaII | CCGG | 4 cut(s) | 38, 965, 1092, 1355 |
| HphI | GGTGA | 8 cut(s) | 347, 497, 525, 578, 858, 938, 1026, 1619 |
| Hpy166II | GTNNAC | 5 cut(s) | 822, 1461, 1529, 1638, 1673 |
| Hpy188I | TCNGA | 6 cut(s) | 129, 400, 495, 753, 1158, 1281 |
| Hpy188III | TCNNGA | 9 cut(s) | 80, 173, 210, 831, 895, 1078, 1386, 1480, 1629 |
| Hpy8I | GTNNAC | 5 cut(s) | 822, 1461, 1529, 1638, 1673 |
| HpyAV | CCTTC | 9 cut(s) | 287, 490, 660, 810, 852, 950, 1074, 1482, 1646 |
| HpyCH4III | ACNGT | 4 cut(s) | 70, 435, 955, 1683 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 275, 473, 1111, 1125, 1192, 1355, 1453, 1619 |
| HpyF3I | CTNAG | 4 cut(s) | 171, 549, 810, 1315 |
| Hsp92II | CATG | 7 cut(s) | 185, 208, 277, 321, 1114, 1483, 1564 |
| HspAI | GCGC | 2 cut(s) | 982, 1439 |
| KspI | CCGCGG | 1 cut(s) | 1623 |
| Kzo9I | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| LguI | GCTCTTC | 1 cut(s) | 1478 |
| LmnI | GCTCC | 2 cut(s) | 95, 1595 |
| LweI | GCATC | 8 cut(s) | 154, 179, 527, 872, 966, 1283, 1578, 1622 |
| MaeI | CTAG | 3 cut(s) | 1116, 1137, 1701 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 7 cut(s) | 360, 489, 570, 835, 1045, 1506, 1662 |
| MbiI | CCGCTC | 4 cut(s) | 163, 412, 1547, 1566 |
| MboI | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| MfeI | CAATTG | 2 cut(s) | 439, 1054 |
| MflI | RGATCY | 2 cut(s) | 1043, 1660 |
| MhlI | GDGCHC | 5 cut(s) | 28, 172, 1031, 1107, 1531 |
| MluCI | AATT | 8 cut(s) | 379, 387, 439, 685, 826, 1054, 1141, 1495 |
| MmeI | TCCRAC | 4 cut(s) | 674, 691, 753, 1304 |
| MseI | TTAA | 3 cut(s) | 512, 684, 881 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1022 |
| MspA1I | CMGCKG | 4 cut(s) | 704, 1049, 1223, 1622 |
| MspCI | CTTAAG | 1 cut(s) | 511 |
| MspI | CCGG | 4 cut(s) | 38, 965, 1092, 1355 |
| MspR9I | CCNGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| MunI | CAATTG | 2 cut(s) | 439, 1054 |
| MvaI | CCWGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| MvnI | CGCG | 1 cut(s) | 1622 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 275, 473, 1111, 1125, 1192, 1355, 1453, 1619 |
| NcoI | CCATGG | 1 cut(s) | 273 |
| NdeII | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| NlaIII | CATG | 7 cut(s) | 185, 208, 277, 321, 1114, 1483, 1564 |
| NlaIV | GGNNCC | 3 cut(s) | 963, 1011, 1045 |
| NmeAIII | GCCGAG | 1 cut(s) | 1268 |
| NspI | RCATGY | 1 cut(s) | 1114 |
| NspV | TTCGAA | 1 cut(s) | 1650 |
| PagI | TCATGA | 1 cut(s) | 1479 |
| PaqCI | CACCTGC | 2 cut(s) | 1259, 1361 |
| PciSI | GCTCTTC | 1 cut(s) | 1478 |
| PfeI | GAWTC | 6 cut(s) | 52, 308, 530, 725, 838, 1226 |
| PfoI | TCCNGGA | 2 cut(s) | 1039, 1207 |
| PinAI | ACCGGT | 1 cut(s) | 964 |
| PpuMI | RGGWCCY | 1 cut(s) | 1009 |
| PsiI | TTATAA | 1 cut(s) | 971 |
| Psp124BI | GAGCTC | 2 cut(s) | 172, 1031 |
| Psp5II | RGGWCCY | 1 cut(s) | 1009 |
| Psp6I | CCWGG | 6 cut(s) | 91, 946, 1039, 1207, 1231, 1534 |
| PspFI | CCCAGC | 1 cut(s) | 1219 |
| PspGI | CCWGG | 6 cut(s) | 91, 946, 1039, 1207, 1231, 1534 |
| PspN4I | GGNNCC | 3 cut(s) | 963, 1011, 1045 |
| PspPI | GGNCC | 3 cut(s) | 1009, 1089, 1446 |
| PspPPI | RGGWCCY | 1 cut(s) | 1009 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1132, 1164 |
| PstI | CTGCAG | 3 cut(s) | 709, 747, 1590 |
| PstNI | CAGNNNCTG | 2 cut(s) | 98, 751 |
| PsuI | RGATCY | 2 cut(s) | 1043, 1660 |
| PvuII | CAGCTG | 2 cut(s) | 704, 1223 |
| RsaI | GTAC | 2 cut(s) | 583, 1163 |
| RsaNI | GTAC | 2 cut(s) | 582, 1162 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SacI | GAGCTC | 2 cut(s) | 172, 1031 |
| SacII | CCGCGG | 1 cut(s) | 1623 |
| SapI | GCTCTTC | 1 cut(s) | 1478 |
| SaqAI | TTAA | 3 cut(s) | 512, 684, 881 |
| Sau3AI | GATC | 7 cut(s) | 358, 487, 568, 833, 1043, 1504, 1660 |
| Sau96I | GGNCC | 3 cut(s) | 1009, 1089, 1446 |
| ScrFI | CCNGG | 6 cut(s) | 93, 948, 1041, 1209, 1233, 1536 |
| SduI | GDGCHC | 5 cut(s) | 28, 172, 1031, 1107, 1531 |
| SfaNI | GCATC | 8 cut(s) | 154, 179, 527, 872, 966, 1283, 1578, 1622 |
| SfcI | CTRYAG | 4 cut(s) | 705, 743, 918, 1586 |
| Sfr303I | CCGCGG | 1 cut(s) | 1623 |
| SfuI | TTCGAA | 1 cut(s) | 1650 |
| SgrBI | CCGCGG | 1 cut(s) | 1623 |
| SinI | GGWCC | 1 cut(s) | 1009 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SmlI | CTYRAG | 4 cut(s) | 218, 407, 511, 619 |
| SmoI | CTYRAG | 4 cut(s) | 218, 407, 511, 619 |
| Sse9I | AATT | 8 cut(s) | 379, 387, 439, 685, 826, 1054, 1141, 1495 |
| SsiI | CCGC | 9 cut(s) | 163, 412, 1047, 1293, 1377, 1547, 1566, 1620, 1622 |
| SspMI | CTAG | 3 cut(s) | 1116, 1137, 1701 |
| SstI | GAGCTC | 2 cut(s) | 172, 1031 |
| StyD4I | CCNGG | 6 cut(s) | 91, 946, 1039, 1207, 1231, 1534 |
| StyI | CCWWGG | 5 cut(s) | 273, 353, 1303, 1442, 1700 |
| TaaI | ACNGT | 4 cut(s) | 70, 435, 955, 1683 |
| TaqI | TCGA | 3 cut(s) | 836, 1077, 1650 |
| TasI | AATT | 8 cut(s) | 379, 387, 439, 685, 826, 1054, 1141, 1495 |
| TauI | GCSGC | 7 cut(s) | 166, 1295, 1380, 1550, 1569, 1622, 1625 |
| TfiI | GAWTC | 6 cut(s) | 52, 308, 530, 725, 838, 1226 |
| Tru1I | TTAA | 3 cut(s) | 512, 684, 881 |
| Tru9I | TTAA | 3 cut(s) | 512, 684, 881 |
| TscAI | CASTG | 2 cut(s) | 93, 199 |
| TspDTI | ATGAA | 5 cut(s) | 17, 198, 306, 1326, 1496 |
| TspGWI | ACGGA | 1 cut(s) | 113 |
| TspRI | CASTG | 2 cut(s) | 93, 199 |
| Vha464I | CTTAAG | 1 cut(s) | 511 |
| VneI | GTGCAC | 1 cut(s) | 1527 |
| VpaK11BI | GGWCC | 1 cut(s) | 1009 |
| XapI | RAATTY | 1 cut(s) | 826 |
| XceI | RCATGY | 1 cut(s) | 1114 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 774 |
| XmaJI | CCTAGG | 1 cut(s) | 1700 |
| XspI | CTAG | 3 cut(s) | 1116, 1137, 1701 |