Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8310085.1

Orthogroup ID

OG0009633

Physical Location & Seq

Genomic Coordinates Forward (+)

285 .. 917

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8310085.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtctccagcgtcttcgaaatccaaatcaaaggacaagaagtcggggaaagaagccccagtgcctgctttaaagccttcgtcaggggctgctaatgcagggagtgggattccggctagtgcatacaatccgcttctagggacattccatacccttgaattgtcaccgacatcgtctgcgtcggctgttcacagtaatagtcgatttcggaatatagatgaaacagatgaccattctgggggctcggtggctgctggagctgagtatgattctgtttcaaataatggtagctggtctggtgagtcggaagaacataaagacaaaacatctaatcctcctgttaagccagaaacagtaccgggagccgacaacgacaagcgagagaaaatccgtcagaagaatgagaggaagcatcagcgtcagaaagagcggcgagcccaagagttgcatgaacgatgtagtggttatcttatgtcgagaaaacttgaggcacttgctcaacagctggtggcaatgggttttgaacatgacgaggcaacagaggctctcatacagaatgaaggccgagtagaggaatcagtatcatggcttttggaaggtgcttcagattcaggtaagccaagagatcaaaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.8

Weight (kDa)

6.19

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26920
fragaria_vesca	FvH4_4g12840 FvH4_4g12840
malus_domestica	MD00G1091100.v1.1 MD04G1022000.v1.1
prunus_persica	Prupe.1G172000_v2.0.a1 Prupe.1G172000_v2.0.a1
pyrus_communis	pycom04g01830 pycom13g29210
rosa_chinensis	RchiOBHm_Chr4g0412341
rosa_laevigata	RLG00000008306
rosa_multiflora	Rmu_co8310085.1_g000001 Rmu_sc0010364.1_g000001 Rmu_sc0024446.1_g000001 Rmu_sc0036305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356470
rosa_rugosa	Rorug04G0104700
rosa_samantha	Rh4AG172400 Rh4BG171600 Rh4CG183300 Rh4DG167000
rosa_wichuraiana	Rw4G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	430
AciI	CCGC	2 cut(s)	131, 430
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	4 cut(s)	83, 137, 238, 571
AgsI	TTSAA	3 cut(s)	158, 279, 524
AhdI	GACNNNNNGTC	1 cut(s)	40
AluBI	AGCT	3 cut(s)	260, 291, 505
AluI	AGCT	3 cut(s)	260, 291, 505
Alw26I	GTCTC	1 cut(s)	9
AlwNI	CAGNNNCTG	2 cut(s)	65, 89
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	2 cut(s)	89, 251
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	156, 311
AsuII	TTCGAA	1 cut(s)	17
BanII	GRGCYC	2 cut(s)	245, 439
BbsI	GAAGAC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	76, 238
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	117, 137
BisI	GCNGC	3 cut(s)	90, 252, 431
BlsI	GCNGC	3 cut(s)	91, 253, 432
Bme1390I	CCNGG	1 cut(s)	360
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 137, 238, 571
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	4 cut(s)	83, 137, 238, 571
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	76, 238
BshFI	GGCC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	113, 359
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	4 cut(s)	83, 137, 238, 571
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	564
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	245, 439
Bsp143I	GATC	1 cut(s)	625
BspACI	CCGC	2 cut(s)	131, 430
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	625
Bst4CI	ACNGT	2 cut(s)	194, 355
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	66, 435
BstDEI	CTNAG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 257, 542
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	76, 238
BstV2I	GAAGAC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	66, 435
CaiI	CAGNNNCTG	2 cut(s)	65, 89
CseI	GACGC	2 cut(s)	168, 407
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	3 cut(s)	449, 527, 585
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	1 cut(s)	72
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	245, 439
Eco57I	CTGAAG	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoT38I	GRGCYC	2 cut(s)	245, 439
FaeI	CATG	3 cut(s)	452, 530, 588
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	3 cut(s)	448, 526, 584
Fnu4HI	GCNGC	3 cut(s)	90, 252, 431
FriOI	GRGCYC	2 cut(s)	245, 439
Fsp4HI	GCNGC	3 cut(s)	90, 252, 431
FspBI	CTAG	2 cut(s)	117, 137
GluI	GCNGC	3 cut(s)	90, 252, 431
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	113, 359
HgaI	GACGC	2 cut(s)	168, 407
Hin1II	CATG	3 cut(s)	452, 530, 588
HinfI	GANTC	5 cut(s)	109, 269, 302, 575, 608
HpaII	CCGG	2 cut(s)	113, 359
HphI	GGTGA	2 cut(s)	156, 311
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	210, 307, 396, 423, 607
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	87, 554, 590
HpyCH4III	ACNGT	2 cut(s)	194, 355
HpyCH4V	TGCA	3 cut(s)	98, 122, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 257, 542
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	452, 530, 588
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	257, 362
Lsp1109I	GCAGC	2 cut(s)	76, 238
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	2 cut(s)	117, 137
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	1 cut(s)	627
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	1 cut(s)	625
MboII	GAAGA	3 cut(s)	6, 320, 409
MhlI	GDGCHC	2 cut(s)	245, 439
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	6 cut(s)	345, 399, 481, 526, 535, 565
MseI	TTAA	2 cut(s)	71, 342
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	2 cut(s)	113, 359
MspR9I	CCNGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	95, 257, 542
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	452, 530, 588
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	590
NmuCI	GTSAC	1 cut(s)	162
NspV	TTCGAA	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	109, 269, 575, 608
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	91, 253, 432
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	65, 89
PsyI	GACNNNGTC	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	71, 342
SatI	GCNGC	3 cut(s)	90, 252, 431
Sau3AI	GATC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	245, 439
SetI	ASST	5 cut(s)	262, 293, 507, 601, 616
SfaNI	GCATC	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	131, 430
SspMI	CTAG	2 cut(s)	117, 137
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	194, 355
TaqI	TCGA	3 cut(s)	17, 202, 476
TasI	AATT	1 cut(s)	158
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	4 cut(s)	109, 269, 575, 608
Tru1I	TTAA	2 cut(s)	71, 342
Tru9I	TTAA	2 cut(s)	71, 342
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	2 cut(s)	89, 251
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	3 cut(s)	234, 465, 573
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	66
Tth111I	GACNNNGTC	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	81
XspI	CTAG	2 cut(s)	117, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.