Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036305.1

Orthogroup ID

OG0009633

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1008

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

cagaatgaaggccgagtagaggaatcagtatcatggcttttggaaggtgcttcagattcaggtaagccaagagatcaaaacattggtgggagtaatttgaaaattgacatatcagaagagcttgctcagattgcagatctagaagtaaggtttaagtgctcgaaacaggaggtggaaagagctattgtagcctgtgagggtgatcttcataaagctgctgaaagcttaagagtagcaaagcaagacccaccttcgatttcacctaagccagaagaaactggtgatcctccaactgctagtaatggcaaggttccagtcactgttaatcagaacttgaggccacaagtaaaatctaatcctcctacaatacaacaaagaagggatgataaggactttaactacacaaaacaaggagctacagttggagggcctgtagattctgcaaacaaacctctgcagcctttgaagagaggacagccaaagttggagtgggcgaaaggccaaccgactccagttccaggtgatagaaggtggtcaagtgccggatcaaatccttcagtttcctattccttggcgtcccctttgcaggcatcatctccaccggtcaagacggaggcacgttatgtagctgttggaggtgagttaaagaaccttcagcctggaacagtgagggaaccagttatcatgatgcagcgtcctcaatctgtcaatacgaagcaggttcctgctactagcatgagctcatcacctcctggaactgccaccaattggtatccttctactagtgtcgaacttatgaggtcgagcgggtttttgcctcagattccaagcagtacgagcctaagcaccagcaatttgggctcaaatcagatgtaccaccagtttcagtatcaacagcagcaacagcaacagcaacagcatcagcatcagcaacatcagcattttattcctggtggccctggggattctcctggaacaattcgagggaataatttgtggaatagagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

36.59

Weight (kDa)

8.97

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26920
fragaria_vesca	FvH4_4g12840 FvH4_4g12840
malus_domestica	MD00G1091100.v1.1 MD04G1022000.v1.1
prunus_persica	Prupe.1G172000_v2.0.a1 Prupe.1G172000_v2.0.a1
pyrus_communis	pycom04g01830 pycom13g29210
rosa_chinensis	RchiOBHm_Chr4g0412341
rosa_laevigata	RLG00000008306
rosa_multiflora	Rmu_co8310085.1_g000001 Rmu_sc0010364.1_g000001 Rmu_sc0024446.1_g000001 Rmu_sc0036305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356470
rosa_rugosa	Rorug04G0104700
rosa_samantha	Rh4AG172400 Rh4BG171600 Rh4CG183300 Rh4DG167000
rosa_wichuraiana	Rw4G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	768
AccBSI	CCGCTC	1 cut(s)	807
AciI	CCGC	1 cut(s)	807
AclWI	GGATC	2 cut(s)	278, 553
AcuI	CTGAAG	3 cut(s)	36, 540, 638
AcyI	GRCGYC	1 cut(s)	575
AfaI	GTAC	2 cut(s)	835, 875
AfiI	CCNNNNNNNGG	4 cut(s)	19, 518, 586, 768
AflII	CTTAAG	1 cut(s)	226
AgeI	ACCGGT	1 cut(s)	601
AgsI	TTSAA	2 cut(s)	100, 466
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	6 cut(s)	517, 658, 751, 949, 958, 970
AluBI	AGCT	7 cut(s)	121, 182, 215, 225, 416, 629, 741
AluI	AGCT	7 cut(s)	121, 182, 215, 225, 416, 629, 741
Alw21I	GWGCWC	2 cut(s)	161, 743
AlwI	GGATC	2 cut(s)	278, 553
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	5 cut(s)	10, 338, 428, 499, 955
ApeKI	GCWGC	4 cut(s)	215, 457, 691, 898
AsiGI	ACCGGT	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	428, 956
AsuHPI	GGTGA	6 cut(s)	212, 252, 293, 533, 650, 738
BanII	GRGCYC	2 cut(s)	743, 863
Bbv12I	GWGCWC	2 cut(s)	161, 743
BbvI	GCAGC	4 cut(s)	202, 469, 703, 910
BciT130I	CCWGG	6 cut(s)	519, 660, 753, 951, 960, 972
BciVI	GTATCC	1 cut(s)	783
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	4 cut(s)	140, 297, 732, 783
BfmI	CTRYAG	3 cut(s)	417, 432, 455
BfrI	CTTAAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	709
BfuI	GTATCC	1 cut(s)	783
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	4 cut(s)	216, 458, 692, 899
BlsI	GCNGC	4 cut(s)	217, 459, 693, 900
Bme1390I	CCNGG	6 cut(s)	519, 660, 753, 951, 960, 972
BmgT120I	GGNCC	2 cut(s)	428, 956
BmiI	GGNNCC	3 cut(s)	312, 675, 723
BmrFI	CCNGG	6 cut(s)	519, 660, 753, 951, 960, 972
BmsI	GCATC	4 cut(s)	599, 678, 928, 934
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	2 cut(s)	264, 842
BpuEI	CTTGAG	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	570, 958, 959
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	4 cut(s)	405, 417, 435, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 518, 586, 768
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	5 cut(s)	283, 314, 512, 677, 880
BseBI	CCWGG	6 cut(s)	519, 660, 753, 951, 960, 972
BseDI	CCNNGG	3 cut(s)	570, 958, 959
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	4 cut(s)	19, 518, 586, 768
BseMII	CTCAG	2 cut(s)	140, 833
BseNI	ACTGG	5 cut(s)	283, 314, 512, 677, 880
BseXI	GCAGC	4 cut(s)	202, 469, 703, 910
BshFI	GGCC	5 cut(s)	12, 340, 430, 501, 957
BshTI	ACCGGT	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	161, 743
BsiSI	CCGG	2 cut(s)	543, 602
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	4 cut(s)	19, 518, 586, 768
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	5 cut(s)	12, 340, 430, 501, 957
Bsp1286I	GDGCHC	3 cut(s)	161, 743, 863
Bsp143I	GATC	5 cut(s)	73, 136, 202, 283, 545
BspACI	CCGC	1 cut(s)	807
BspANI	GGCC	5 cut(s)	12, 340, 430, 501, 957
BspCNI	CTCAG	2 cut(s)	139, 832
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	3 cut(s)	312, 675, 723
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	2 cut(s)	278, 553
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	5 cut(s)	283, 314, 512, 677, 880
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	570, 958, 959
BssMI	GATC	5 cut(s)	73, 136, 202, 283, 545
BssNI	GRCGYC	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	6 cut(s)	519, 660, 753, 951, 960, 972
Bst4CI	ACNGT	3 cut(s)	322, 421, 667
Bst6I	CTCTTC	2 cut(s)	111, 461
BstACI	GRCGYC	1 cut(s)	575
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	123, 588
BstDEI	CTNAG	4 cut(s)	126, 264, 819, 842
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	5 cut(s)	76, 139, 205, 286, 548
BstMBI	GATC	5 cut(s)	73, 136, 202, 283, 545
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 188, 837, 858, 904, 937
BstNI	CCWGG	6 cut(s)	519, 660, 753, 951, 960, 972
BstSCI	CCNGG	6 cut(s)	517, 658, 751, 949, 958, 970
BstSFI	CTRYAG	3 cut(s)	417, 432, 455
BstV1I	GCAGC	4 cut(s)	202, 469, 703, 910
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	783
BsuRI	GGCC	5 cut(s)	12, 340, 430, 501, 957
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	318, 672
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	123, 588
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	428, 956
CseI	GACGC	2 cut(s)	564, 683
Csp6I	GTAC	2 cut(s)	834, 874
CspAI	ACCGGT	1 cut(s)	601
CviAII	CATG	3 cut(s)	33, 685, 736
CviQI	GTAC	2 cut(s)	834, 874
DdeI	CTNAG	4 cut(s)	126, 264, 819, 842
DpnI	GATC	5 cut(s)	75, 138, 204, 285, 547
DpnII	GATC	5 cut(s)	73, 136, 202, 283, 545
Eam1104I	CTCTTC	2 cut(s)	111, 461
EarI	CTCTTC	2 cut(s)	111, 461
Ecl136II	GAGCTC	1 cut(s)	741
Eco130I	CCWWGG	1 cut(s)	570
Eco24I	GRGCYC	2 cut(s)	743, 863
Eco53kI	GAGCTC	1 cut(s)	741
Eco57I	CTGAAG	3 cut(s)	36, 540, 638
EcoICRI	GAGCTC	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRII	CCWGG	6 cut(s)	517, 658, 751, 949, 958, 970
EcoT14I	CCWWGG	1 cut(s)	570
EcoT38I	GRGCYC	2 cut(s)	743, 863
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	3 cut(s)	36, 688, 739
FaiI	YATR	7 cut(s)	34, 110, 210, 624, 686, 737, 797
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	32, 684, 735
FauI	CCCGC	1 cut(s)	800
Fnu4HI	GCNGC	4 cut(s)	216, 458, 692, 899
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	2 cut(s)	743, 863
Fsp4HI	GCNGC	4 cut(s)	216, 458, 692, 899
FspBI	CTAG	4 cut(s)	140, 297, 732, 783
GluI	GCNGC	4 cut(s)	216, 458, 692, 899
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	12, 340, 430, 501, 957
HapII	CCGG	2 cut(s)	543, 602
HgaI	GACGC	2 cut(s)	564, 683
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	36, 688, 739
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	6 cut(s)	23, 56, 437, 508, 823, 965
HpaII	CCGG	2 cut(s)	543, 602
HphI	GGTGA	6 cut(s)	212, 252, 293, 533, 650, 738
Hpy188I	TCNGA	6 cut(s)	55, 115, 129, 330, 822, 870
Hpy188III	TCNNGA	3 cut(s)	140, 607, 685
HpyAV	CCTTC	7 cut(s)	38, 261, 372, 522, 564, 662, 786
HpyCH4III	ACNGT	3 cut(s)	322, 421, 667
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	5 cut(s)	134, 443, 457, 586, 691
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 188, 837, 858, 904, 937
HpyF3I	CTNAG	4 cut(s)	126, 264, 819, 842
HpySE526I	ACGT	1 cut(s)	619
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	3 cut(s)	36, 688, 739
Kzo9I	GATC	5 cut(s)	73, 136, 202, 283, 545
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	4 cut(s)	202, 469, 703, 910
LweI	GCATC	4 cut(s)	599, 678, 928, 934
MaeI	CTAG	4 cut(s)	140, 297, 732, 783
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	5 cut(s)	75, 138, 204, 285, 547
MbiI	CCGCTC	1 cut(s)	807
MboI	GATC	5 cut(s)	73, 136, 202, 283, 545
MboII	GAAGA	4 cut(s)	128, 197, 284, 478
MfeI	CAATTG	1 cut(s)	766
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	161, 743, 863
MluCI	AATT	6 cut(s)	94, 102, 766, 853, 978, 991
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	4 cut(s)	314, 403, 465, 613
MseI	TTAA	5 cut(s)	153, 227, 324, 396, 644
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	2 cut(s)	543, 602
MspR9I	CCNGG	6 cut(s)	519, 660, 753, 951, 960, 972
MunI	CAATTG	1 cut(s)	766
MvaI	CCWGG	6 cut(s)	519, 660, 753, 951, 960, 972
MwoI	GCNNNNNNNGC	6 cut(s)	131, 188, 837, 858, 904, 937
NdeII	GATC	5 cut(s)	73, 136, 202, 283, 545
NlaIII	CATG	3 cut(s)	36, 688, 739
NlaIV	GGNNCC	3 cut(s)	312, 675, 723
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	684
PasI	CCCWGGG	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	5 cut(s)	23, 56, 437, 823, 965
PflMI	CCANNNNNTGG	1 cut(s)	768
PfoI	TCCNGGA	2 cut(s)	751, 970
PinAI	ACCGGT	1 cut(s)	601
PkrI	GCNGC	4 cut(s)	217, 459, 693, 900
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	743
Psp6I	CCWGG	6 cut(s)	517, 658, 751, 949, 958, 970
PspGI	CCWGG	6 cut(s)	517, 658, 751, 949, 958, 970
PspN4I	GGNNCC	3 cut(s)	312, 675, 723
PspPI	GGNCC	2 cut(s)	428, 956
PstI	CTGCAG	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	835, 875
RsaNI	GTAC	2 cut(s)	834, 874
SacI	GAGCTC	1 cut(s)	743
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	5 cut(s)	153, 227, 324, 396, 644
SatI	GCNGC	4 cut(s)	216, 458, 692, 899
Sau3AI	GATC	5 cut(s)	73, 136, 202, 283, 545
Sau96I	GGNCC	2 cut(s)	428, 956
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	6 cut(s)	519, 660, 753, 951, 960, 972
SduI	GDGCHC	3 cut(s)	161, 743, 863
SfaNI	GCATC	4 cut(s)	599, 678, 928, 934
SfcI	CTRYAG	3 cut(s)	417, 432, 455
SmlI	CTYRAG	2 cut(s)	226, 334
SmoI	CTYRAG	2 cut(s)	226, 334
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	6 cut(s)	94, 102, 766, 853, 978, 991
SsiI	CCGC	1 cut(s)	807
SspMI	CTAG	4 cut(s)	140, 297, 732, 783
SstI	GAGCTC	1 cut(s)	743
StyD4I	CCNGG	6 cut(s)	517, 658, 751, 949, 958, 970
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	322, 421, 667
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	5 cut(s)	161, 254, 789, 803, 982
TasI	AATT	6 cut(s)	94, 102, 766, 853, 978, 991
TfiI	GAWTC	5 cut(s)	23, 56, 437, 823, 965
Tru1I	TTAA	5 cut(s)	153, 227, 324, 396, 644
Tru9I	TTAA	5 cut(s)	153, 227, 324, 396, 644
TscAI	CASTG	2 cut(s)	325, 672
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	215, 457, 691, 898
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	21, 197
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	325, 672
Van91I	CCANNNNNTGG	1 cut(s)	768
Vha464I	CTTAAG	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XspI	CTAG	4 cut(s)	140, 297, 732, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.