Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004379

Physical Location & Seq

Genomic Coordinates Reverse (-)

3826889 .. 3837500

Gene Structure 10612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04290.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCCTGTTGTCATTCGCACTCTTGGCTGCTTCACAATACTCAAGCCCTTTCCCTCTGGAAATGGAGAAGCTTCACTCTCAGATTCGTAGGAACAACGAGAGGAAGAAGCAGCATTCAATCTCCAAATTCACTCCGATTTTCTCCCCTAATTTCCCATAAGGGCTACTGCAATACATTCAATCGTAGTTTTAATTCGGCTTCACCGGGAGTTGTTAGCGAGAGTGGTGATGCCGCCGCCGCAGCCTCTTACTCTAAAAGTGAGGGAGTAGTAAGCCGAGACATGCTGCTGGCTTCAACTTTGTTCAAGCGTGAAGAGAAAACAGTGAACAGTAATCCTTCAGATGGTAGAGTAATGCTCATCGACGGCACATCCATCATTTATAGAGCATACTATAAGCTTTTAGCAAAGCTGCATCATGGCCATTTGTCACATGCCGATGGAAACGGAGATTGGGTGTTGACCATCTTCTCAGCACTTTCTCTTATAATTGATGTCCTGATGTTTATCCCTTCCCATGTAGCGGTGGTGTTTGACCATGATGGAGTTTCATTTGGTCAAACTTGTAATTCATCCAACGAAAGTTTTAAAGGAAAAGGCCTGAATTTTCGTCACACTTTGTACCCCGCATACAAGAGCAATCGCCCCCCTACACCTGATACCATTGTCCAGGGACTCCAATACTTGAAAGCATCCATCAAGGCTATGTCCATTAAGGTGATTGAGGTGCCTGGTGTGGAAGCTGATGATGTGATTGGAACATTGGCTGTTAGAAGTGTTGATAGTGGGTACAAGGTACGGGTTGTCTCCCCAGACAAAGACTTTTTTCAGATTCTATCTCCTTCATTGCGCCTTCTACGAATTGCTCCACGTGGCTTTGATATGGTTTCATTTGGAATGGAGGATTTTGCTGAAAAATATGGAAGCCTTCAACCTTCTCAGTTTGTTGATGTGATCTCGCTTGTCGGTGACAAATCTGATAATATTCCAGGAGTCCATGGAATTGGAAATGTTCATGCTGTGCAACTCATCTCTAAATTTGGCACATTGGAGAATTTATTGCGGTGTGTTGATCAAGTTGAAGAGGAACGAATAAGAAAGGCCTTGATAGAAAATGCTGACCAGGCTCTCTTGAGCAAGAACTTGGCACTACTACGCTCTGATCTTCCACTGTACATGGTGCCTTTTGCCACAAAAGATCTGACATTTCAGAAGCCTGAGGACAATGGGGAGAAATTCACGAGCCTCCTAACCGCTATAAGTGCATATGCGGAAGGATTTTCAGCTGATCCAATCATCAGGAGAGCATTTTACTTATGGAACAAACTTGAAAACCAAAATCAAGTTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

451

Amino Acids

49.79

Weight (kDa)

8.44

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050
fragaria_vesca	FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060
malus_domestica	MD04G1048800.v1.1 MD17G1177600.v1.1
prunus_persica	Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1
pyrus_communis	pycom04g04290
rosa_chinensis	RchiOBHm_Chr4g0406021
rosa_laevigata	RLG00000008801
rosa_multiflora	Rmu_sc0001630.1_g000025
rosa_roxburghii	Rroxscaffold_5G00350780
rosa_rugosa	Rorug04G0064900
rosa_samantha	Rh4AG135400 Rh4BG132400 Rh4CG143300 Rh4DG130500
rosa_wichuraiana	Rw4G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AccB1I	GGYRCC	2 cut(s)	727, 1180
AciI	CCGC	8 cut(s)	234, 237, 240, 524, 627, 1063, 1254, 1271
AclWI	GGATC	1 cut(s)	1283
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	5 cut(s)	127, 604, 1037, 1054, 1235
AcuI	CTGAAG	1 cut(s)	324
AcvI	CACGTG	1 cut(s)	872
AfaI	GTAC	4 cut(s)	623, 791, 798, 1175
AfiI	CCNNNNNNNGG	2 cut(s)	344, 523
AgsI	TTSAA	8 cut(s)	119, 181, 297, 307, 688, 932, 1082, 1331
AjnI	CCWGG	4 cut(s)	669, 730, 988, 1122
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	5 cut(s)	72, 400, 412, 743, 1286
AluI	AGCT	5 cut(s)	72, 400, 412, 743, 1286
Alw26I	GTCTC	2 cut(s)	273, 811
AlwI	GGATC	1 cut(s)	1283
AoxI	GGCC	4 cut(s)	3, 421, 598, 1101
ApeKI	GCWGC	5 cut(s)	28, 111, 242, 286, 412
ApoI	RAATTY	5 cut(s)	127, 604, 1037, 1054, 1235
AspLEI	GCGC	1 cut(s)	852
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	4 cut(s)	195, 239, 730, 980
AxyI	CCTNAGG	1 cut(s)	1218
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	2 cut(s)	727, 1180
BauI	CACGAG	1 cut(s)	1240
BbrPI	CACGTG	1 cut(s)	872
BbvI	GCAGC	5 cut(s)	15, 123, 254, 273, 399
BccI	CCATC	6 cut(s)	338, 383, 434, 473, 536, 704
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	4 cut(s)	671, 732, 990, 1124
BclI	TGATCA	1 cut(s)	1072
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	273, 811
BglII	AGATCT	1 cut(s)	1198
BisI	GCNGC	8 cut(s)	29, 112, 234, 237, 240, 243, 287, 413
BlsI	GCNGC	8 cut(s)	30, 113, 235, 238, 241, 244, 288, 414
Bme1390I	CCNGG	5 cut(s)	207, 671, 732, 990, 1124
BmiI	GGNNCC	2 cut(s)	729, 1182
BmrFI	CCNGG	5 cut(s)	207, 671, 732, 990, 1124
BmsI	GCATC	3 cut(s)	220, 424, 701
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpuEI	CTTGAG	2 cut(s)	27, 1153
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	2 cut(s)	872, 1350
BsaBI	GATNNNNATC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	670, 997
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 523
Bse21I	CCTNAGG	1 cut(s)	1218
Bse3DI	GCAATG	1 cut(s)	845
Bse8I	GATNNNNATC	1 cut(s)	506
BseBI	CCWGG	4 cut(s)	671, 732, 990, 1124
BseDI	CCNNGG	2 cut(s)	670, 997
BseGI	GGATG	3 cut(s)	371, 572, 692
BseJI	GATNNNNATC	1 cut(s)	506
BseLI	CCNNNNNNNGG	2 cut(s)	344, 523
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	4 cut(s)	94, 486, 953, 1209
BseXI	GCAGC	5 cut(s)	15, 123, 254, 273, 399
BshFI	GGCC	4 cut(s)	5, 423, 600, 1103
BshNI	GGYRCC	2 cut(s)	727, 1180
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	344, 523
BsmAI	GTCTC	2 cut(s)	273, 811
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	4 cut(s)	5, 423, 600, 1103
Bsp1407I	TGTACA	1 cut(s)	1173
Bsp143I	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
Bsp19I	CCATGG	1 cut(s)	997
BspACI	CCGC	8 cut(s)	234, 237, 240, 524, 627, 1063, 1254, 1271
BspANI	GGCC	4 cut(s)	5, 423, 600, 1103
BspCNI	CTCAG	4 cut(s)	93, 485, 952, 1210
BspLI	GGNNCC	2 cut(s)	729, 1182
BspPI	GGATC	1 cut(s)	1283
BspT107I	GGYRCC	2 cut(s)	727, 1180
BsrDI	GCAATG	1 cut(s)	845
BsrGI	TGTACA	1 cut(s)	1173
BssECI	CCNNGG	2 cut(s)	670, 997
BssMI	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
BssSI	CACGAG	1 cut(s)	1240
BssT1I	CCWWGG	1 cut(s)	997
Bst2BI	CACGAG	1 cut(s)	1240
Bst2UI	CCWGG	4 cut(s)	671, 732, 990, 1124
Bst4CI	ACNGT	3 cut(s)	325, 332, 1173
Bst6I	CTCTTC	2 cut(s)	309, 1077
BstAUI	TGTACA	1 cut(s)	1173
BstBAI	YACGTR	2 cut(s)	872, 1350
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	4 cut(s)	80, 472, 939, 1218
BstDSI	CCRYGG	1 cut(s)	997
BstF5I	GGATG	3 cut(s)	371, 572, 692
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	5 cut(s)	957, 1075, 1165, 1201, 1291
BstMAI	GTCTC	2 cut(s)	273, 811
BstMBI	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 239, 242, 1124, 1262
BstNI	CCWGG	4 cut(s)	671, 732, 990, 1124
BstNSI	RCATGY	2 cut(s)	286, 437
BstSCI	CCNGG	5 cut(s)	205, 669, 730, 988, 1122
BstSNI	TACGTA	1 cut(s)	1350
BstV1I	GCAGC	5 cut(s)	15, 123, 254, 273, 399
BstX2I	RGATCY	1 cut(s)	1198
BstXI	CCANNNNNNTGG	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	1198
Bsu36I	CCTNAGG	1 cut(s)	1218
BsuRI	GGCC	4 cut(s)	5, 423, 600, 1103
BtgI	CCRYGG	1 cut(s)	997
BtsCI	GGATG	3 cut(s)	371, 572, 692
BtsIMutI	CAGTG	2 cut(s)	330, 1169
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	852
Csp6I	GTAC	4 cut(s)	622, 790, 797, 1174
CviAII	CATG	8 cut(s)	283, 419, 434, 518, 539, 998, 1016, 1177
CviQI	GTAC	4 cut(s)	622, 790, 797, 1174
DdeI	CTNAG	4 cut(s)	80, 472, 939, 1218
DpnI	GATC	5 cut(s)	956, 1074, 1164, 1200, 1290
DpnII	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
DraI	TTTAAA	1 cut(s)	589
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	309, 1077
EarI	CTCTTC	2 cut(s)	309, 1077
Eco105I	TACGTA	1 cut(s)	1350
Eco130I	CCWWGG	1 cut(s)	997
Eco147I	AGGCCT	2 cut(s)	600, 1103
Eco57I	CTGAAG	1 cut(s)	324
Eco72I	CACGTG	1 cut(s)	872
Eco81I	CCTNAGG	1 cut(s)	1218
EcoRII	CCWGG	4 cut(s)	669, 730, 988, 1122
EcoT14I	CCWWGG	1 cut(s)	997
ErhI	CCWWGG	1 cut(s)	997
FaeI	CATG	8 cut(s)	286, 422, 437, 521, 542, 1001, 1019, 1180
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	8 cut(s)	282, 418, 433, 517, 538, 997, 1015, 1176
FauI	CCCGC	1 cut(s)	634
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	1 cut(s)	1072
Fnu4HI	GCNGC	8 cut(s)	29, 112, 234, 237, 240, 243, 287, 413
FokI	GGATG	3 cut(s)	358, 559, 679
Fsp4HI	GCNGC	8 cut(s)	29, 112, 234, 237, 240, 243, 287, 413
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	8 cut(s)	29, 112, 234, 237, 240, 243, 287, 413
HaeIII	GGCC	4 cut(s)	5, 423, 600, 1103
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	8 cut(s)	286, 422, 437, 521, 542, 1001, 1019, 1180
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HindIII	AAGCTT	2 cut(s)	70, 398
HinfI	GANTC	4 cut(s)	84, 675, 832, 993
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	4 cut(s)	195, 239, 730, 980
Hpy166II	GTNNAC	2 cut(s)	328, 462
Hpy188I	TCNGA	8 cut(s)	83, 137, 343, 831, 979, 1162, 1203, 1212
Hpy188III	TCNNGA	5 cut(s)	58, 499, 1132, 1240, 1300
Hpy8I	GTNNAC	2 cut(s)	328, 462
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	7 cut(s)	348, 522, 852, 863, 938, 945, 1268
HpyCH4III	ACNGT	3 cut(s)	325, 332, 1173
HpyCH4IV	ACGT	2 cut(s)	871, 1349
HpyCH4V	TGCA	4 cut(s)	171, 415, 1024, 1265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 239, 242, 1124, 1262
HpyF3I	CTNAG	4 cut(s)	80, 472, 939, 1218
HpySE526I	ACGT	2 cut(s)	871, 1349
Hsp92II	CATG	8 cut(s)	286, 422, 437, 521, 542, 1001, 1019, 1180
HspAI	GCGC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	1072
Kzo9I	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	5 cut(s)	15, 123, 254, 273, 399
LweI	GCATC	3 cut(s)	220, 424, 701
MaeII	ACGT	2 cut(s)	871, 1349
MaeIII	GTNAC	4 cut(s)	429, 611, 968, 1345
MalI	GATC	5 cut(s)	956, 1074, 1164, 1200, 1290
MboI	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
MboII	GAAGA	5 cut(s)	117, 326, 460, 1094, 1157
MflI	RGATCY	1 cut(s)	1198
MlsI	TGGCCA	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	669, 1002
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	9 cut(s)	65, 95, 256, 256, 718, 895, 1078, 1213, 1256
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	3 cut(s)	192, 588, 714
MslI	CAYNNNNRTG	2 cut(s)	438, 716
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	1286
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	5 cut(s)	207, 671, 732, 990, 1124
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	4 cut(s)	671, 732, 990, 1124
MwoI	GCNNNNNNNGC	5 cut(s)	25, 239, 242, 1124, 1262
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	997
NdeI	CATATG	1 cut(s)	1267
NdeII	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
NlaIII	CATG	8 cut(s)	286, 422, 437, 521, 542, 1001, 1019, 1180
NlaIV	GGNNCC	2 cut(s)	729, 1182
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	3 cut(s)	429, 611, 968
NspI	RCATGY	2 cut(s)	286, 437
PceI	AGGCCT	2 cut(s)	600, 1103
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	84, 832
PfoI	TCCNGGA	1 cut(s)	988
PkrI	GCNGC	8 cut(s)	30, 113, 235, 238, 241, 244, 288, 414
PleI	GAGTC	2 cut(s)	669, 1001
PmaCI	CACGTG	1 cut(s)	872
PmlI	CACGTG	1 cut(s)	872
PpsI	GAGTC	2 cut(s)	669, 1001
Ppu21I	YACGTR	2 cut(s)	872, 1350
PsiI	TTATAA	1 cut(s)	488
Psp6I	CCWGG	4 cut(s)	669, 730, 988, 1122
PspCI	CACGTG	1 cut(s)	872
PspGI	CCWGG	4 cut(s)	669, 730, 988, 1122
PspN4I	GGNNCC	2 cut(s)	729, 1182
PsuI	RGATCY	1 cut(s)	1198
PvuII	CAGCTG	1 cut(s)	1286
RsaI	GTAC	4 cut(s)	623, 791, 798, 1175
RsaNI	GTAC	4 cut(s)	622, 790, 797, 1174
RseI	CAYNNNNRTG	2 cut(s)	438, 716
SaqAI	TTAA	3 cut(s)	192, 588, 714
SatI	GCNGC	8 cut(s)	29, 112, 234, 237, 240, 243, 287, 413
Sau3AI	GATC	5 cut(s)	954, 1072, 1162, 1198, 1288
SchI	GAGTC	2 cut(s)	669, 1002
ScrFI	CCNGG	5 cut(s)	207, 671, 732, 990, 1124
SfaNI	GCATC	3 cut(s)	220, 424, 701
SmiMI	CAYNNNNRTG	2 cut(s)	438, 716
SmlI	CTYRAG	2 cut(s)	42, 1132
SmoI	CTYRAG	2 cut(s)	42, 1132
SnaBI	TACGTA	1 cut(s)	1350
SseBI	AGGCCT	2 cut(s)	600, 1103
SsiI	CCGC	8 cut(s)	234, 237, 240, 524, 627, 1063, 1254, 1271
SspI	AATATT	1 cut(s)	985
StuI	AGGCCT	2 cut(s)	600, 1103
StyD4I	CCNGG	5 cut(s)	205, 669, 730, 988, 1122
StyI	CCWWGG	1 cut(s)	997
TaaI	ACNGT	3 cut(s)	325, 332, 1173
TaiI	ACGT	2 cut(s)	874, 1352
TaqI	TCGA	1 cut(s)	363
TatI	WGTACW	1 cut(s)	1173
TauI	GCSGC	3 cut(s)	236, 239, 242
TfiI	GAWTC	2 cut(s)	84, 832
Tru1I	TTAA	3 cut(s)	192, 588, 714
Tru9I	TTAA	3 cut(s)	192, 588, 714
TscAI	CASTG	2 cut(s)	330, 1176
TseFI	GTSAC	3 cut(s)	429, 611, 968
TseI	GCWGC	5 cut(s)	28, 111, 242, 286, 412
Tsp45I	GTSAC	3 cut(s)	429, 611, 968
TspDTI	ATGAA	5 cut(s)	540, 561, 834, 879, 1004
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	330, 1176
XapI	RAATTY	5 cut(s)	127, 604, 1037, 1054, 1235
XceI	RCATGY	2 cut(s)	286, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.