Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001630.1

Orthogroup ID

OG0004379

Physical Location & Seq

Genomic Coordinates Forward (+)

182799 .. 195061

Gene Structure 12263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001630.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atggttcatatcttatttatggcctgctctttctcttcgctgcttcactttcaatccctctggagaagcttcaagttgtttggcccaggagctcacaagaggctcgggcaccacttgcgcactcccaacaacctcacttgtctccatttttctcctataacatccgcaaagggacattgtaatttagccaccagtgttcactcggcattacccggacttgttcatgacaatggagatttgctggttgattcagggaagcatgaacataaagttgtatatagcaacccttcaaatggtagagtaatgctcattgacggcacatccatcatctatagatcatactacaagcttctcgccaagttacaccatggccatctgacacatgctgatggaaatggagattgggtgctgaccatatttacagcgctttctcttataattgatgtgctacagtttgttccttcccatgtggcggtggtgtttgaccatgatggaggttcatttggtcaaactagtgtttcatccaaagaaagtgttagaggaaaaggcatgaattttcgtcatactttataccccgcatacaagagcaatcgcccccctacaccagataccattgttcagggacttcagtacttgaaagcatccctcaaatctatgtccatcacggtgattgaggttccaggtgtggaagctgatgatgtgattggaacattggctgttaggagtgttgataatggttacaaggtacgagttgtctccccagacaaagacttttttcagatcctatctccttcattgcgtcttctacgaattgcttcacgtggctttgagatggtttcgtttggaatggaggactttgctaaaaaatatggaaccttgcaaccctctcagtttgttgatgtgatgtcacttgttggtgacaaatgtgataacattccaggggttgatggaattggaaacgttcatgctctgcaactcatcactaaatttgcctcattggagaatttattgcagtgtgtgcatcaagttgaggaagaacgaatcagaaaggccttgatagcaggtgctgaacaggctatattaagcaagaacttggcactattacgttctgatcttccattctacatggtaccattcaatacaaaagatctggcatttataaaacctgaggatgatggagagaaattcaggagtctcctcactgccattagtgcgtatgcagaaggattttctgctgatccagtcataagaagagcattttacttatggaacaaactacaaaaccataaccaagtttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

433

Amino Acids

47.96

Weight (kDa)

8.65

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050
fragaria_vesca	FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060
malus_domestica	MD04G1048800.v1.1 MD17G1177600.v1.1
prunus_persica	Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1
pyrus_communis	pycom04g04290
rosa_chinensis	RchiOBHm_Chr4g0406021
rosa_laevigata	RLG00000008801
rosa_multiflora	Rmu_sc0001630.1_g000025
rosa_roxburghii	Rroxscaffold_5G00350780
rosa_rugosa	Rorug04G0064900
rosa_samantha	Rh4AG135400 Rh4BG132400 Rh4CG143300 Rh4DG130500
rosa_wichuraiana	Rw4G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	437, 1160
AarI	CACCTGC	1 cut(s)	1052
Acc16I	TGCGCA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	1052
Acc65I	GGTACC	1 cut(s)	1129
AccB1I	GGYRCC	2 cut(s)	108, 1129
AciI	CCGC	3 cut(s)	165, 473, 576
AclI	AACGTT	1 cut(s)	960
AclWI	GGATC	2 cut(s)	775, 1232
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	4 cut(s)	553, 986, 1003, 1184
AcuI	CTGAAG	1 cut(s)	611
AcvI	CACGTG	1 cut(s)	821
AfaI	GTAC	3 cut(s)	632, 747, 1131
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	293, 472
AgsI	TTSAA	5 cut(s)	53, 73, 291, 637, 1138
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	3 cut(s)	85, 679, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	4 cut(s)	69, 92, 349, 692
AluI	AGCT	4 cut(s)	69, 92, 349, 692
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	3 cut(s)	146, 760, 1199
AlwI	GGATC	2 cut(s)	775, 1232
AlwNI	CAGNNNCTG	1 cut(s)	1067
Ama87I	CYCGRG	1 cut(s)	104
Aor51HI	AGCGCT	1 cut(s)	426
AoxI	GGCC	4 cut(s)	21, 82, 370, 1050
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	4 cut(s)	553, 986, 1003, 1184
Asp700I	GAANNNNTTC	1 cut(s)	814
Asp718I	GGTACC	1 cut(s)	1129
AspLEI	GCGC	2 cut(s)	120, 427
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	679, 929
AvaI	CYCGRG	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	1167
BaeGI	GKGCMC	1 cut(s)	111
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BalI	TGGCCA	1 cut(s)	372
BanI	GGYRCC	2 cut(s)	108, 1129
BanII	GRGCYC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	8 cut(s)	332, 381, 383, 485, 668, 826, 941, 1169
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	3 cut(s)	87, 681, 939
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	146, 760, 1199
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	2 cut(s)	513, 1300
BfmI	CTRYAG	2 cut(s)	331, 449
BfoI	RGCGCY	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	1052
BglII	AGATCT	1 cut(s)	1147
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	632
Bme1390I	CCNGG	4 cut(s)	87, 213, 681, 939
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	4 cut(s)	110, 678, 874, 1131
BmrFI	CCNGG	4 cut(s)	87, 213, 681, 939
BmsI	GCATC	2 cut(s)	650, 1030
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	821
BsaJI	CCNNGG	3 cut(s)	85, 367, 938
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 472
Bse1I	ACTGG	2 cut(s)	192, 1241
Bse21I	CCTNAGG	1 cut(s)	1167
Bse3DI	GCAATG	1 cut(s)	794
BseBI	CCWGG	3 cut(s)	87, 681, 939
BseDI	CCNNGG	3 cut(s)	85, 367, 938
BseGI	GGATG	5 cut(s)	161, 320, 521, 641, 1177
BseLI	CCNNNNNNNGG	2 cut(s)	293, 472
BseMI	GCAATG	1 cut(s)	794
BseMII	CTCAG	2 cut(s)	902, 1158
BseNI	ACTGG	2 cut(s)	192, 1241
BseRI	GAGGAG	1 cut(s)	1187
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	4 cut(s)	23, 84, 372, 1052
BshNI	GGYRCC	2 cut(s)	108, 1129
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	186, 636
BslI	CCNNNNNNNGG	2 cut(s)	293, 472
BsmAI	GTCTC	3 cut(s)	146, 760, 1199
BsmFI	GGGAC	2 cut(s)	186, 636
BsnI	GGCC	4 cut(s)	23, 84, 372, 1052
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	94, 111
Bsp143I	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	3 cut(s)	165, 473, 576
BspANI	GGCC	4 cut(s)	23, 84, 372, 1052
BspCNI	CTCAG	2 cut(s)	901, 1159
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	110, 678, 874, 1131
BspMI	ACCTGC	1 cut(s)	1052
BspPI	GGATC	2 cut(s)	775, 1232
BspQI	GCTCTTC	1 cut(s)	1246
BspT107I	GGYRCC	2 cut(s)	108, 1129
BsrDI	GCAATG	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	192, 1241
BssECI	CCNNGG	3 cut(s)	85, 367, 938
BssMI	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	3 cut(s)	87, 681, 939
Bst4CI	ACNGT	2 cut(s)	453, 667
Bst6I	CTCTTC	2 cut(s)	40, 1246
BstAPI	GCANNNNNTGC	2 cut(s)	115, 1018
BstBAI	YACGTR	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	888, 1167
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	5 cut(s)	161, 320, 521, 641, 1177
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	2 cut(s)	120, 427
BstKTI	GATC	5 cut(s)	338, 783, 1114, 1150, 1240
BstMAI	GTCTC	3 cut(s)	146, 760, 1199
BstMBI	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 1018, 1058, 1073, 1211
BstNI	CCWGG	3 cut(s)	87, 681, 939
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	4 cut(s)	85, 211, 679, 937
BstSFI	CTRYAG	2 cut(s)	331, 449
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	2 cut(s)	780, 1147
BstYI	RGATCY	2 cut(s)	780, 1147
Bsu36I	CCTNAGG	1 cut(s)	1167
BsuRI	GGCC	4 cut(s)	23, 84, 372, 1052
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	5 cut(s)	161, 320, 521, 641, 1177
BtsI	GCAGTG	2 cut(s)	1019, 1200
BtsIMutI	CAGTG	3 cut(s)	199, 1019, 1200
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	1067
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	2 cut(s)	120, 427
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	3 cut(s)	631, 746, 1130
CviAII	CATG	9 cut(s)	224, 260, 368, 383, 467, 488, 550, 965, 1126
CviQI	GTAC	3 cut(s)	631, 746, 1130
DdeI	CTNAG	2 cut(s)	888, 1167
DpnI	GATC	5 cut(s)	337, 782, 1113, 1149, 1239
DpnII	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	40, 1246
EarI	CTCTTC	2 cut(s)	40, 1246
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	1052
Eco24I	GRGCYC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	611
Eco72I	CACGTG	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	1167
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	92
EcoRII	CCWGG	3 cut(s)	85, 679, 937
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	9 cut(s)	227, 263, 371, 386, 470, 491, 553, 968, 1129
FaqI	GGGAC	2 cut(s)	186, 636
FatI	CATG	9 cut(s)	223, 259, 367, 382, 466, 487, 549, 964, 1125
FauI	CCCGC	1 cut(s)	583
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	5 cut(s)	148, 307, 508, 628, 1184
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	513, 1300
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	2 cut(s)	119, 426
GluI	GCNGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	4 cut(s)	23, 84, 372, 1052
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	2 cut(s)	120, 427
Hin1II	CATG	9 cut(s)	227, 263, 371, 386, 470, 491, 553, 968, 1129
Hin6I	GCGC	2 cut(s)	118, 425
HinP1I	GCGC	2 cut(s)	118, 425
HindIII	AAGCTT	2 cut(s)	67, 347
HinfI	GANTC	3 cut(s)	248, 1041, 1192
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	679, 929
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	378, 780, 1046, 1111
Hpy188III	TCNNGA	3 cut(s)	61, 224, 1189
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	297, 471, 801, 1217
HpyCH4III	ACNGT	2 cut(s)	453, 667
HpyCH4IV	ACGT	3 cut(s)	820, 960, 1105
HpyCH4V	TGCA	5 cut(s)	880, 973, 1012, 1021, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 1018, 1058, 1073, 1211
HpyF3I	CTNAG	2 cut(s)	888, 1167
HpySE526I	ACGT	3 cut(s)	820, 960, 1105
Hsp92II	CATG	9 cut(s)	227, 263, 371, 386, 470, 491, 553, 968, 1129
HspAI	GCGC	2 cut(s)	118, 425
KpnI	GGTACC	1 cut(s)	1133
Kzo9I	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
LguI	GCTCTTC	1 cut(s)	1246
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	2 cut(s)	650, 1030
MaeI	CTAG	2 cut(s)	513, 1300
MaeII	ACGT	3 cut(s)	820, 960, 1105
MaeIII	GTNAC	4 cut(s)	360, 737, 906, 917
MalI	GATC	5 cut(s)	337, 782, 1113, 1149, 1239
MboI	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
MboII	GAAGA	5 cut(s)	27, 794, 1046, 1106, 1263
MflI	RGATCY	2 cut(s)	780, 1147
MhlI	GDGCHC	2 cut(s)	94, 111
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	8 cut(s)	181, 438, 553, 810, 951, 986, 1003, 1184
MluNI	TGGCCA	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	1201
Mox20I	TGGCCA	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	1 cut(s)	1082
MslI	CAYNNNNRTG	3 cut(s)	228, 387, 665
Msp20I	TGGCCA	1 cut(s)	372
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	4 cut(s)	87, 213, 681, 939
MvaI	CCWGG	3 cut(s)	87, 681, 939
MwoI	GCNNNNNNNGC	5 cut(s)	115, 1018, 1058, 1073, 1211
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
NlaIII	CATG	9 cut(s)	227, 263, 371, 386, 470, 491, 553, 968, 1129
NlaIV	GGNNCC	4 cut(s)	110, 678, 874, 1131
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	906, 917
NsbI	TGCGCA	1 cut(s)	119
NspI	RCATGY	1 cut(s)	386
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	1052
PceI	AGGCCT	1 cut(s)	1052
PciSI	GCTCTTC	1 cut(s)	1246
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	248, 1041
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	1200
PmaCI	CACGTG	1 cut(s)	821
PmlI	CACGTG	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	1200
Ppu21I	YACGTR	1 cut(s)	821
PsiI	TTATAA	2 cut(s)	437, 1160
Psp124BI	GAGCTC	1 cut(s)	94
Psp1406I	AACGTT	1 cut(s)	960
Psp6I	CCWGG	3 cut(s)	85, 679, 937
PspCI	CACGTG	1 cut(s)	821
PspGI	CCWGG	3 cut(s)	85, 679, 937
PspN4I	GGNNCC	4 cut(s)	110, 678, 874, 1131
PspPI	GGNCC	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	2 cut(s)	780, 1147
RsaI	GTAC	3 cut(s)	632, 747, 1131
RsaNI	GTAC	3 cut(s)	631, 746, 1130
RseI	CAYNNNNRTG	3 cut(s)	228, 387, 665
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	1246
SaqAI	TTAA	1 cut(s)	1082
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	5 cut(s)	335, 780, 1111, 1147, 1237
Sau96I	GGNCC	1 cut(s)	83
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	1 cut(s)	1201
ScrFI	CCNGG	4 cut(s)	87, 213, 681, 939
SduI	GDGCHC	2 cut(s)	94, 111
SfaNI	GCATC	2 cut(s)	650, 1030
SfcI	CTRYAG	2 cut(s)	331, 449
SmiMI	CAYNNNNRTG	3 cut(s)	228, 387, 665
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	8 cut(s)	181, 438, 553, 810, 951, 986, 1003, 1184
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	3 cut(s)	165, 473, 576
SspMI	CTAG	2 cut(s)	513, 1300
SstI	GAGCTC	1 cut(s)	94
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	4 cut(s)	85, 211, 679, 937
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	453, 667
TaiI	ACGT	3 cut(s)	823, 963, 1108
TasI	AATT	8 cut(s)	181, 438, 553, 810, 951, 986, 1003, 1184
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	248, 1041
Tru1I	TTAA	1 cut(s)	1082
Tru9I	TTAA	1 cut(s)	1082
TscAI	CASTG	3 cut(s)	199, 1019, 1207
TseFI	GTSAC	2 cut(s)	906, 917
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	2 cut(s)	906, 917
TspDTI	ATGAA	7 cut(s)	212, 276, 489, 510, 566, 783, 953
TspRI	CASTG	3 cut(s)	199, 1019, 1207
XapI	RAATTY	4 cut(s)	553, 986, 1003, 1184
XceI	RCATGY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	2 cut(s)	513, 1300
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.