Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004379

Physical Location & Seq

Genomic Coordinates Reverse (-)

39440728 .. 39451218

Gene Structure 10491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCCTGCTCTTTCTCGTCGCTGCTTCACTTTCAATCCCTTTGGAGGAGAAGCTTCAAGTTGTTTGGCCCAGGAGCTCACAAGAGGCTCGGGCACCACTTGCGCACTCCCAACAAGCTCACTTGTCTCCATTTTTCTCCTATAACATCCGCAAAGGTACATTGTAATAATCTAGCCACTAGTGTTCACTCGGCATTACCTGGACTTGTTCATGACAATGGAGATTTGCTGGTTGATTCAGGGAAGCATGAAGAAAAAATTGTAAATAGTAACCCTTCAAATGGTAGAGTAATGCTCATTGACGGCACATCCATCATCTATAGATCATACTACAAGCTTCTTGCCAAGTTACACCATGGCCATCTGACACATGCTGATGGAAATGGAGATTGGGTGCTGACCATATTTACAGCGCTTTCTCTTATAATTGATGTGCTACAGTTTGTTCCTTCCCATGTGGCGGTGGTGTTTGACCATGATGGCATGAATTTTCGTCATACTTTATACCCCGCATACAAGAGCAATCGCCCCCCTACACCAGATACCATTGTTCAGGGACTTCAGTACTTGAAAGCATCCCTCAAATCTATGTCCATCACGGTGATTGAGGTTCCAGGTGTGGAAGCTGATGATGTGATTGGAACATTGGCTGTTAGGAGTGTTGATAATGGTTACAAGGTACGAGTTGTCTCCCCAGACAAAGACTTTTTCCAGATCCTATCTCCTTCATTGCGTCTTCTACGAATTGCTTCACGTGGCTTTGAGATGGTTTCATTTGGAATGGAGGACTTTGCTAAAAAATATGGAACCTTGCAACCCTCTCAGTTTGTTGATGTGATGTCACTTGTTGGTGACAAATGTGATAACATTCCAGGGGTTGATGGAATTGGAAACGTTCATGCTCTGCAACTCATCACTAAATTTGCCTCATTGGAGAATTTATTGCAGTGTGTGCATCAAGTTGAGGAAGAACGAATCAGAAAGGCCTTGATAGCAGGTGCTGAACAGGCTATATTAAGCAAGAACTTGGTAATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

347

Amino Acids

38.27

Weight (kDa)

8.72

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	97 - 269	8.8e-43	5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc	PF01367	272 - 344	2.2e-21	5'-3' exonuclease, C-terminal SAM fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050
fragaria_vesca	FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060
malus_domestica	MD04G1048800.v1.1 MD17G1177600.v1.1
prunus_persica	Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1
pyrus_communis	pycom04g04290
rosa_chinensis	RchiOBHm_Chr4g0406021
rosa_laevigata	RLG00000008801
rosa_multiflora	Rmu_sc0001630.1_g000025
rosa_roxburghii	Rroxscaffold_5G00350780
rosa_rugosa	Rorug04G0064900
rosa_samantha	Rh4AG135400 Rh4BG132400 Rh4CG143300 Rh4DG130500
rosa_wichuraiana	Rw4G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AarI	CACCTGC	1 cut(s)	986
Acc16I	TGCGCA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	986
AccB1I	GGYRCC	1 cut(s)	93
AciI	CCGC	3 cut(s)	150, 461, 510
AclI	AACGTT	1 cut(s)	894
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	3 cut(s)	487, 920, 937
AcuI	CTGAAG	1 cut(s)	545
AcvI	CACGTG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	159, 566, 681
AfeI	AGCGCT	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	45, 281, 460
AgsI	TTSAA	4 cut(s)	35, 58, 279, 571
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	4 cut(s)	70, 199, 613, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	5 cut(s)	54, 77, 118, 337, 626
AluI	AGCT	5 cut(s)	54, 77, 118, 337, 626
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	131, 694
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	414
AoxI	GGCC	4 cut(s)	3, 67, 358, 984
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	3 cut(s)	487, 920, 937
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	2 cut(s)	105, 415
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	613, 863
AvaI	CYCGRG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	7 cut(s)	320, 369, 371, 473, 602, 760, 875
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	4 cut(s)	72, 201, 615, 873
BcoDI	GTCTC	2 cut(s)	131, 694
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	173, 180
BfmI	CTRYAG	2 cut(s)	319, 437
BfoI	RGCGCY	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	986
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmcAI	AGTACT	1 cut(s)	566
Bme1390I	CCNGG	4 cut(s)	72, 201, 615, 873
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	3 cut(s)	95, 612, 808
BmrFI	CCNGG	4 cut(s)	72, 201, 615, 873
BmsI	GCATC	2 cut(s)	584, 964
BpiI	GAAGAC	1 cut(s)	728
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BsaAI	YACGTR	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	70, 355, 872
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 281, 460
Bse3DI	GCAATG	1 cut(s)	728
BseBI	CCWGG	4 cut(s)	72, 201, 615, 873
BseDI	CCNNGG	3 cut(s)	70, 355, 872
BseGI	GGATG	3 cut(s)	146, 308, 575
BseLI	CCNNNNNNNGG	3 cut(s)	45, 281, 460
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	1 cut(s)	836
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	9
BshFI	GGCC	4 cut(s)	5, 69, 360, 986
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	45, 281, 460
BsmAI	GTCTC	2 cut(s)	131, 694
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	4 cut(s)	5, 69, 360, 986
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	79, 96
Bsp143I	GATC	2 cut(s)	323, 714
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	150, 461, 510
BspANI	GGCC	4 cut(s)	5, 69, 360, 986
BspCNI	CTCAG	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	95, 612, 808
BspMI	ACCTGC	1 cut(s)	986
BspPI	GGATC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	728
BssECI	CCNNGG	3 cut(s)	70, 355, 872
BssMI	GATC	2 cut(s)	323, 714
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	4 cut(s)	72, 201, 615, 873
Bst4CI	ACNGT	2 cut(s)	441, 601
BstAPI	GCANNNNNTGC	2 cut(s)	100, 952
BstBAI	YACGTR	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	822
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	146, 308, 575
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	2 cut(s)	105, 415
BstKTI	GATC	2 cut(s)	326, 717
BstMAI	GTCTC	2 cut(s)	131, 694
BstMBI	GATC	2 cut(s)	323, 714
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 952, 992, 1007
BstNI	CCWGG	4 cut(s)	72, 201, 615, 873
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	70, 199, 613, 871
BstSFI	CTRYAG	2 cut(s)	319, 437
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	728
BstX2I	RGATCY	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	714
BsuRI	GGCC	4 cut(s)	5, 69, 360, 986
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	146, 308, 575
BtsI	GCAGTG	1 cut(s)	953
BtsIMutI	CAGTG	1 cut(s)	953
BveI	ACCTGC	1 cut(s)	986
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	2 cut(s)	105, 415
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	3 cut(s)	158, 565, 680
CviAII	CATG	8 cut(s)	212, 248, 356, 371, 455, 476, 484, 899
CviQI	GTAC	3 cut(s)	158, 565, 680
DdeI	CTNAG	1 cut(s)	822
DpnI	GATC	2 cut(s)	325, 716
DpnII	GATC	2 cut(s)	323, 714
EaeI	YGGCCR	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	986
Eco24I	GRGCYC	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	545
Eco72I	CACGTG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	4 cut(s)	70, 199, 613, 871
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	8 cut(s)	215, 251, 359, 374, 458, 479, 487, 902
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	8 cut(s)	211, 247, 355, 370, 454, 475, 483, 898
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	3 cut(s)	133, 295, 562
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	2 cut(s)	173, 180
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	2 cut(s)	104, 414
GluI	GCNGC	1 cut(s)	23
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	5, 69, 360, 986
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	2 cut(s)	105, 415
Hin1II	CATG	8 cut(s)	215, 251, 359, 374, 458, 479, 487, 902
Hin6I	GCGC	2 cut(s)	103, 413
HinP1I	GCGC	2 cut(s)	103, 413
HindIII	AAGCTT	2 cut(s)	52, 335
HinfI	GANTC	2 cut(s)	236, 975
HphI	GGTGA	2 cut(s)	613, 863
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	366, 980, 1037
Hpy188III	TCNNGA	2 cut(s)	212, 712
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	285, 459, 735
HpyCH4III	ACNGT	2 cut(s)	441, 601
HpyCH4IV	ACGT	2 cut(s)	754, 894
HpyCH4V	TGCA	4 cut(s)	814, 907, 946, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 952, 992, 1007
HpyF3I	CTNAG	1 cut(s)	822
HpySE526I	ACGT	2 cut(s)	754, 894
Hsp92II	CATG	8 cut(s)	215, 251, 359, 374, 458, 479, 487, 902
HspAI	GCGC	2 cut(s)	103, 413
Kzo9I	GATC	2 cut(s)	323, 714
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	2 cut(s)	584, 964
MaeI	CTAG	2 cut(s)	173, 180
MaeII	ACGT	2 cut(s)	754, 894
MaeIII	GTNAC	5 cut(s)	269, 348, 671, 840, 851
MalI	GATC	2 cut(s)	325, 716
MboI	GATC	2 cut(s)	323, 714
MboII	GAAGA	3 cut(s)	263, 728, 980
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	79, 96
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	7 cut(s)	258, 426, 487, 744, 885, 920, 937
MluNI	TGGCCA	1 cut(s)	360
MnlI	CCTC	8 cut(s)	39, 78, 590, 601, 778, 829, 937, 958
Mox20I	TGGCCA	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	1 cut(s)	1016
MslI	CAYNNNNRTG	3 cut(s)	216, 375, 599
Msp20I	TGGCCA	1 cut(s)	360
MspR9I	CCNGG	4 cut(s)	72, 201, 615, 873
MvaI	CCWGG	4 cut(s)	72, 201, 615, 873
MwoI	GCNNNNNNNGC	4 cut(s)	100, 952, 992, 1007
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	2 cut(s)	323, 714
NlaIII	CATG	8 cut(s)	215, 251, 359, 374, 458, 479, 487, 902
NlaIV	GGNNCC	3 cut(s)	95, 612, 808
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	840, 851
NsbI	TGCGCA	1 cut(s)	104
NspI	RCATGY	1 cut(s)	374
PagI	TCATGA	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	986
PceI	AGGCCT	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	236, 975
PkrI	GCNGC	1 cut(s)	24
PmaCI	CACGTG	1 cut(s)	755
PmlI	CACGTG	1 cut(s)	755
Ppu21I	YACGTR	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	79
Psp1406I	AACGTT	1 cut(s)	894
Psp6I	CCWGG	4 cut(s)	70, 199, 613, 871
PspCI	CACGTG	1 cut(s)	755
PspGI	CCWGG	4 cut(s)	70, 199, 613, 871
PspN4I	GGNNCC	3 cut(s)	95, 612, 808
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	1 cut(s)	714
RsaI	GTAC	3 cut(s)	159, 566, 681
RsaNI	GTAC	3 cut(s)	158, 565, 680
RseI	CAYNNNNRTG	3 cut(s)	216, 375, 599
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	1016
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	323, 714
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	566
ScrFI	CCNGG	4 cut(s)	72, 201, 615, 873
SduI	GDGCHC	2 cut(s)	79, 96
SfaNI	GCATC	2 cut(s)	584, 964
SfcI	CTRYAG	2 cut(s)	319, 437
SmiMI	CAYNNNNRTG	3 cut(s)	216, 375, 599
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	7 cut(s)	258, 426, 487, 744, 885, 920, 937
SseBI	AGGCCT	1 cut(s)	986
SsiI	CCGC	3 cut(s)	150, 461, 510
SspMI	CTAG	2 cut(s)	173, 180
SstI	GAGCTC	1 cut(s)	79
StuI	AGGCCT	1 cut(s)	986
StyD4I	CCNGG	4 cut(s)	70, 199, 613, 871
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	441, 601
TaiI	ACGT	2 cut(s)	757, 897
TasI	AATT	7 cut(s)	258, 426, 487, 744, 885, 920, 937
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	236, 975
Tru1I	TTAA	1 cut(s)	1016
Tru9I	TTAA	1 cut(s)	1016
TscAI	CASTG	1 cut(s)	953
TseFI	GTSAC	2 cut(s)	840, 851
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	2 cut(s)	840, 851
TspDTI	ATGAA	6 cut(s)	200, 264, 500, 717, 762, 887
TspRI	CASTG	1 cut(s)	953
XapI	RAATTY	3 cut(s)	487, 920, 937
XceI	RCATGY	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	2 cut(s)	173, 180
ZrmI	AGTACT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.