Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004379

Physical Location & Seq

Genomic Coordinates Forward (+)

10052191 .. 10058304

Gene Structure 6114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAAGTTACTCACAGGAAAGTACCTTTCGCTTCATACTTGCCATCAACATTTTCTAGTTCTTATAAAATACTGTTTGTTTCTTTTCTGCAGGTTGATCTAAATAGAGCGGGTGTGCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTGTTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGTGGAGATAAAAAATTTGAACGCTTTTTCGGCAGTGAGCAGGGCAATTGATTATGAAATTTCGAGGCAGGTGCTTCTTCATAGTCAAGGCCAAGACAAAGAAATTGTACAGGAAACACGGCTATGGGAAGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCTGAACCAGACCTTCCAGAAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGGAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAACGACATGAATGTTGCAGAATTTTTTGATACTACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCACTGAGGTCAAGCTTTCCCCTCAAGAGTTGGCTGAGTTAATAGCTTCCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTTCTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTGTCAAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

370

Amino Acids

41.53

Weight (kDa)

5.89

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	31 - 180	1e-56	GatB/GatE catalytic domain
GatB_Yqey	PF02637	219 - 366	3.1e-52	GatB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050 AT3G52050
fragaria_vesca	FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060 FvH4_5g12060
malus_domestica	MD04G1048800.v1.1 MD17G1177600.v1.1
prunus_persica	Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1 Prupe.1G206500_v2.0.a1
pyrus_communis	pycom04g04290
rosa_chinensis	RchiOBHm_Chr4g0406021
rosa_laevigata	RLG00000008801
rosa_multiflora	Rmu_sc0001630.1_g000025
rosa_roxburghii	Rroxscaffold_5G00350780
rosa_rugosa	Rorug04G0064900
rosa_samantha	Rh4AG135400 Rh4BG132400 Rh4CG143300 Rh4DG130500
rosa_wichuraiana	Rw4G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	2 cut(s)	82, 361
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	2 cut(s)	110, 927
AclWI	GGATC	1 cut(s)	917
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	3 cut(s)	316, 360, 656
AfaI	GTAC	3 cut(s)	24, 411, 877
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	164, 322
AjnI	CCWGG	2 cut(s)	528, 1063
Alw21I	GWGCWC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	917
AoxI	GGCC	3 cut(s)	391, 604, 1027
ApeKI	GCWGC	6 cut(s)	167, 179, 701, 728, 976, 1009
ApoI	RAATTY	3 cut(s)	316, 360, 656
AspS9I	GGNCC	2 cut(s)	604, 982
AsuHPI	GGTGA	1 cut(s)	517
AsuNHI	GCTAGC	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	982
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	1029
BanII	GRGCYC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	6 cut(s)	154, 166, 688, 715, 988, 996
BccI	CCATC	5 cut(s)	52, 536, 595, 764, 809
BceAI	ACGGC	1 cut(s)	437
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	2 cut(s)	530, 1065
BfaI	CTAG	3 cut(s)	57, 698, 863
BfmI	CTRYAG	3 cut(s)	89, 168, 180
BfuAI	ACCTGC	2 cut(s)	82, 361
BisI	GCNGC	6 cut(s)	168, 180, 702, 729, 977, 1010
BlsI	GCNGC	6 cut(s)	169, 181, 703, 730, 978, 1011
Bme1390I	CCNGG	2 cut(s)	530, 1065
Bme18I	GGWCC	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	604, 982
BmrFI	CCNGG	2 cut(s)	530, 1065
BmsI	GCATC	1 cut(s)	679
BmtI	GCTAGC	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	146, 765
BsaJI	CCNNGG	2 cut(s)	528, 1064
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	530, 1065
BseDI	CCNNGG	2 cut(s)	528, 1064
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	4 cut(s)	455, 753, 783, 921
BseNI	ACTGG	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	6 cut(s)	154, 166, 688, 715, 988, 996
BshFI	GGCC	3 cut(s)	393, 606, 1029
BsiHKAI	GWGCWC	1 cut(s)	442
BslFI	GGGAC	3 cut(s)	310, 832, 900
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmFI	GGGAC	3 cut(s)	310, 832, 900
BsnI	GGCC	3 cut(s)	393, 606, 1029
Bsp1286I	GDGCHC	2 cut(s)	120, 442
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	97, 922
BspACI	CCGC	2 cut(s)	110, 927
BspANI	GGCC	3 cut(s)	393, 606, 1029
BspCNI	CTCAG	4 cut(s)	454, 754, 784, 922
BspMAI	CTGCAG	3 cut(s)	93, 172, 184
BspMI	ACCTGC	2 cut(s)	82, 361
BspOI	GCTAGC	1 cut(s)	701
BspPI	GGATC	1 cut(s)	917
BsrBI	CCGCTC	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	528, 1064
BssMI	GATC	2 cut(s)	97, 922
Bst2UI	CCWGG	2 cut(s)	530, 1065
Bst4CI	ACNGT	5 cut(s)	75, 291, 451, 880, 1044
Bst6I	CTCTTC	1 cut(s)	741
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	614, 699, 1027
BstDEI	CTNAG	6 cut(s)	441, 608, 762, 792, 930, 1005
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstKTI	GATC	2 cut(s)	100, 925
BstMBI	GATC	2 cut(s)	97, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 332, 698
BstNI	CCWGG	2 cut(s)	530, 1065
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	528, 1063
BstSFI	CTRYAG	3 cut(s)	89, 168, 180
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	6 cut(s)	154, 166, 688, 715, 988, 996
BstX2I	RGATCY	1 cut(s)	922
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	393, 606, 1029
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 759
BveI	ACCTGC	2 cut(s)	82, 361
Cac8I	GCNNGC	3 cut(s)	614, 699, 1027
Cfr13I	GGNCC	2 cut(s)	604, 982
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	3 cut(s)	23, 410, 876
CviAII	CATG	2 cut(s)	613, 643
CviQI	GTAC	3 cut(s)	23, 410, 876
DdeI	CTNAG	6 cut(s)	441, 608, 762, 792, 930, 1005
DpnI	GATC	2 cut(s)	99, 924
DpnII	GATC	2 cut(s)	97, 922
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Ecl136II	GAGCTC	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	982
Eco53kI	GAGCTC	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	528, 1063
EcoT38I	GRGCYC	1 cut(s)	442
FaeI	CATG	2 cut(s)	616, 646
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	3 cut(s)	310, 832, 900
FatI	CATG	2 cut(s)	612, 642
FauI	CCCGC	2 cut(s)	103, 934
Fnu4HI	GCNGC	6 cut(s)	168, 180, 702, 729, 977, 1010
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	6 cut(s)	168, 180, 702, 729, 977, 1010
FspBI	CTAG	3 cut(s)	57, 698, 863
GluI	GCNGC	6 cut(s)	168, 180, 702, 729, 977, 1010
HaeIII	GGCC	3 cut(s)	393, 606, 1029
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	616, 646
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	2 cut(s)	967, 1081
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	6 cut(s)	139, 444, 481, 588, 915, 964
Hpy188III	TCNNGA	4 cut(s)	497, 512, 572, 782
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	7 cut(s)	230, 295, 428, 464, 518, 673, 877
HpyCH4III	ACNGT	5 cut(s)	75, 291, 451, 880, 1044
HpyCH4V	TGCA	7 cut(s)	91, 170, 182, 232, 616, 653, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 332, 698
HpyF3I	CTNAG	6 cut(s)	441, 608, 762, 792, 930, 1005
Hsp92II	CATG	2 cut(s)	616, 646
Kzo9I	GATC	2 cut(s)	97, 922
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	6 cut(s)	154, 166, 688, 715, 988, 996
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	3 cut(s)	57, 698, 863
MaeIII	GTNAC	2 cut(s)	7, 451
MalI	GATC	2 cut(s)	99, 924
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	2 cut(s)	97, 922
MboII	GAAGA	6 cut(s)	371, 443, 475, 758, 844, 908
MfeI	CAATTG	2 cut(s)	276, 348
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	2 cut(s)	120, 442
MlsI	TGGCCA	1 cut(s)	1029
MluCI	AATT	8 cut(s)	276, 284, 316, 348, 360, 405, 656, 1094
MluNI	TGGCCA	1 cut(s)	1029
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	7 cut(s)	186, 360, 453, 533, 582, 757, 789
Mox20I	TGGCCA	1 cut(s)	1029
MscI	TGGCCA	1 cut(s)	1029
MseI	TTAA	3 cut(s)	675, 797, 1097
MslI	CAYNNNNRTG	1 cut(s)	424
Msp20I	TGGCCA	1 cut(s)	1029
MspA1I	CMGCKG	2 cut(s)	929, 979
MspR9I	CCNGG	2 cut(s)	530, 1065
MunI	CAATTG	2 cut(s)	276, 348
MvaI	CCWGG	2 cut(s)	530, 1065
MwoI	GCNNNNNNNGC	3 cut(s)	176, 332, 698
NdeII	GATC	2 cut(s)	97, 922
NheI	GCTAGC	1 cut(s)	697
NlaIII	CATG	2 cut(s)	616, 646
NspI	RCATGY	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	967, 1081
PkrI	GCNGC	6 cut(s)	169, 181, 703, 730, 978, 1011
PsiI	TTATAA	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	528, 1063
PspGI	CCWGG	2 cut(s)	528, 1063
PspPI	GGNCC	2 cut(s)	604, 982
PstI	CTGCAG	3 cut(s)	93, 172, 184
PsuI	RGATCY	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	979
RsaI	GTAC	3 cut(s)	24, 411, 877
RsaNI	GTAC	3 cut(s)	23, 410, 876
RseI	CAYNNNNRTG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	675, 797, 1097
SatI	GCNGC	6 cut(s)	168, 180, 702, 729, 977, 1010
Sau3AI	GATC	2 cut(s)	97, 922
Sau96I	GGNCC	2 cut(s)	604, 982
ScrFI	CCNGG	2 cut(s)	530, 1065
SduI	GDGCHC	2 cut(s)	120, 442
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	3 cut(s)	89, 168, 180
SinI	GGWCC	1 cut(s)	982
SmiMI	CAYNNNNRTG	1 cut(s)	424
SmlI	CTYRAG	2 cut(s)	125, 780
SmoI	CTYRAG	2 cut(s)	125, 780
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	8 cut(s)	276, 284, 316, 348, 360, 405, 656, 1094
SsiI	CCGC	2 cut(s)	110, 927
SspMI	CTAG	3 cut(s)	57, 698, 863
SstI	GAGCTC	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	528, 1063
TaaI	ACNGT	5 cut(s)	75, 291, 451, 880, 1044
TaqI	TCGA	2 cut(s)	271, 365
TasI	AATT	8 cut(s)	276, 284, 316, 348, 360, 405, 656, 1094
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	967, 1081
Tru1I	TTAA	3 cut(s)	675, 797, 1097
Tru9I	TTAA	3 cut(s)	675, 797, 1097
TscAI	CASTG	2 cut(s)	342, 766
TseI	GCWGC	6 cut(s)	167, 179, 701, 728, 976, 1009
TspRI	CASTG	2 cut(s)	342, 766
VpaK11BI	GGWCC	1 cut(s)	982
XagI	CCTNNNNNAGG	1 cut(s)	527
XapI	RAATTY	3 cut(s)	316, 360, 656
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	992
XspI	CTAG	3 cut(s)	57, 698, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.