pycom04g07110

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015615
Physical Location & Seq
Forward (+)
7488223 .. 7490292
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGCAGAGAGGCAGAGGTGGACCAGGTGGGAGGGGTTCTTTCTCCGACTTCAATGACCCGTTTTCCGGTTTTGGGGGCTTTGGGGGATTAGGGGGTCAGAGGAGTTTGATTTCTGACTTTTTTGGAGGAAGGGATCCTTTTGATGACCCGTTCTTCACTCGCCCATTTGGAGGTATGTCCCCGTTTGGAGGTATGTCTCCATTTGGAGGTATGTCTCCTTTTGGAGGTATGCCCCCATTTGGAGGGATGTTGGAGTCGAGTGTTTTTGGTCCCAGTGGTGCCAATTTTCCGGATATGCAGCCAAATGGGTTTATTGAGCATCAGGCTCCAGAGCCCAAGAGATCACGGGGCCCTATCATTGAGGAGATAAACTCTGATAATGAAGACGAAGATGCTAACAATGAGAAAAAGGAAAATCCTCGAAAGCGCAGTGGACCGAGCAATGAACCTTACGTTGAGGATCCTGATGATGAAGTTGAAGAGAGGAGCAGCAAGCAATTGCAGCATAGGGACAGCTACAGCCAGTCTAATTCTATGCAAGCGCAGCCTCAAGCTCACAGCTACACGTTTCAGAGCTCCACCGTCACTTGTGGTGGTGCTAATGGCACATATTATACATCCTCCAAGACAAGAAGGATGGGGAGTGATGGGCTGGCTTTTGAAGAAAGCAAGGAAGCTGATAGTACTTCTAGGCAAGCAACTCACAGGGTATCAAGAGGGCTCCACAATAAGGTGTTGTATGATGACATGTGGATACTTATGCTGATAGAGACTAACTTGGAGTATCTGATTGGTTCAATACTAGATGAGCTTTCCGGGTTTGAAGATGCATGGAAAGGAACTGCTAAGAAACATTTGCCTGGATTGGCTGATAAATTTGGTGGTTATGAAAATATAGGAGCCGGCAGCAGCGGAAATGGGCAAGCCGGTCGGGAAGGTTGGGCGCTTCCATCCAATGAGCGTGTACAGAACCCCGGCAATATGATTCAAGATGCTAGAGACAAGGCAGGAGGATCTTCTCACTCAAACCAGTCTGGTAGTAGGATGAGAGCAGATGTTAAGGACAAGAGTGGCTATTCCCGTGGGAGAGGAAGAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

367

Amino Acids

39.6

Weight (kDa)

5.4

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g00720
malus_domestica MD04G1079300.v1.1
prunus_persica Prupe.5G079800_v2.0.a1
pyrus_communis pycom04g07110
rosa_chinensis RchiOBHm_Chr7g0201491
rosa_laevigata RLG00000003669
rosa_multiflora Rmu_co8397869.1_g000001 Rmu_sc0002046.1_g000005 Rmu_sc0017656.1_g000004
rosa_roxburghii Rroxscaffold_3G00255260
rosa_rugosa Rorug07G0064300
rosa_samantha Rh7AG190900 Rh7BG193200 Rh7CG202300 Rh7DG195900
rosa_wichuraiana Rw7G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 1 cut(s) 912
AclWI GGATC 5 cut(s) 128, 141, 455, 468, 1021
AcsI RAATTY 1 cut(s) 875
AfaI GTAC 2 cut(s) 685, 966
AfiI CCNNNNNNNGG 9 cut(s) 65, 72, 170, 188, 206, 224, 239, 242, 730
AflIII ACRYGT 2 cut(s) 564, 747
AgsI TTSAA 6 cut(s) 52, 479, 662, 798, 824, 989
AjnI CCWGG 2 cut(s) 22, 859
AluBI AGCT 6 cut(s) 516, 554, 561, 576, 677, 811
AluI AGCT 6 cut(s) 516, 554, 561, 576, 677, 811
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 4 cut(s) 201, 219, 764, 993
AlwI GGATC 5 cut(s) 128, 141, 455, 468, 1021
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 1 cut(s) 349
ApaI GGGCCC 1 cut(s) 353
ApeKI GCWGC 6 cut(s) 298, 489, 502, 544, 906, 909
ApoI RAATTY 1 cut(s) 875
AspLEI GCGC 3 cut(s) 429, 544, 946
AspS9I GGNCC 5 cut(s) 20, 269, 349, 350, 434
AsuC2I CCSGG 2 cut(s) 817, 975
AvaII GGWCC 3 cut(s) 20, 269, 434
BaeGI GKGCMC 1 cut(s) 353
BamHI GGATCC 2 cut(s) 133, 460
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 4 cut(s) 336, 353, 578, 723
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 6 cut(s) 310, 501, 514, 556, 918, 921
BccI CCATC 3 cut(s) 631, 641, 958
BcgI CGANNNNNNTGC 2 cut(s) 911, 945
BciT130I CCWGG 2 cut(s) 24, 861
BciVI GTATCC 1 cut(s) 747
BcnI CCSGG 2 cut(s) 817, 975
BcoDI GTCTC 4 cut(s) 201, 219, 764, 993
BfaI CTAG 3 cut(s) 690, 803, 996
BfmI CTRYAG 1 cut(s) 517
BfoI RGCGCY 1 cut(s) 947
BfuI GTATCC 1 cut(s) 747
BisI GCNGC 6 cut(s) 299, 490, 503, 545, 907, 910
BlsI GCNGC 6 cut(s) 300, 491, 504, 546, 908, 911
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 4 cut(s) 24, 817, 861, 975
Bme18I GGWCC 3 cut(s) 20, 269, 434
BmgT120I GGNCC 5 cut(s) 20, 269, 349, 350, 434
BmiI GGNNCC 9 cut(s) 135, 271, 280, 327, 350, 351, 462, 722, 901
BmrFI CCNGG 4 cut(s) 24, 817, 861, 975
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 4 cut(s) 328, 382, 817, 982
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 534
BpuMI CCSGG 2 cut(s) 817, 975
BsaJI CCNNGG 2 cut(s) 973, 1081
BsaWI WCCGGW 2 cut(s) 65, 289
Bsc4I CCNNNNNNNGG 9 cut(s) 65, 72, 170, 188, 206, 224, 239, 242, 730
Bse118I RCCGGY 2 cut(s) 902, 926
Bse1I ACTGG 3 cut(s) 273, 523, 1030
Bse3DI GCAATG 1 cut(s) 448
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 2 cut(s) 24, 861
BseDI CCNNGG 2 cut(s) 973, 1081
BseGI GGATG 5 cut(s) 252, 617, 642, 950, 1050
BseLI CCNNNNNNNGG 9 cut(s) 65, 72, 170, 188, 206, 224, 239, 242, 730
BseMI GCAATG 1 cut(s) 448
BseNI ACTGG 3 cut(s) 273, 523, 1030
BseRI GAGGAG 3 cut(s) 115, 377, 499
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 6 cut(s) 310, 501, 514, 556, 918, 921
Bsh1285I CGRYCG 1 cut(s) 931
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 6 cut(s) 66, 290, 816, 903, 927, 975
BslFI GGGAC 3 cut(s) 163, 255, 524
BslI CCNNNNNNNGG 9 cut(s) 65, 72, 170, 188, 206, 224, 239, 242, 730
BsmAI GTCTC 4 cut(s) 201, 219, 764, 993
BsmFI GGGAC 3 cut(s) 163, 255, 524
BsnI GGCC 1 cut(s) 351
Bsp120I GGGCCC 1 cut(s) 349
Bsp1286I GDGCHC 4 cut(s) 336, 353, 578, 723
Bsp13I TCCGGA 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 4 cut(s) 133, 341, 460, 1013
BspACI CCGC 1 cut(s) 912
BspANI GGCC 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 289
BspLI GGNNCC 9 cut(s) 135, 271, 280, 327, 350, 351, 462, 722, 901
BspPI GGATC 5 cut(s) 128, 141, 455, 468, 1021
BspQI GCTCTTC 1 cut(s) 1087
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 448
BsrFI RCCGGY 2 cut(s) 902, 926
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 3 cut(s) 273, 523, 1030
BssAI RCCGGY 2 cut(s) 902, 926
BssECI CCNNGG 2 cut(s) 973, 1081
BssMI GATC 4 cut(s) 133, 341, 460, 1013
Bst2UI CCWGG 2 cut(s) 24, 861
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 2 cut(s) 474, 1087
BstAUI TGTACA 1 cut(s) 964
BstC8I GCNNGC 6 cut(s) 494, 540, 654, 696, 904, 924
BstDEI CTNAG 1 cut(s) 846
BstDSI CCRYGG 1 cut(s) 1081
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 5 cut(s) 252, 617, 642, 950, 1050
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 3 cut(s) 429, 544, 946
BstKTI GATC 4 cut(s) 136, 344, 463, 1016
BstMAI GTCTC 4 cut(s) 201, 219, 764, 993
BstMBI GATC 4 cut(s) 133, 341, 460, 1013
BstMCI CGRYCG 1 cut(s) 931
BstMWI GCNNNNNNNGC 2 cut(s) 502, 544
BstNI CCWGG 2 cut(s) 24, 861
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 4 cut(s) 22, 815, 859, 973
BstSFI CTRYAG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 6 cut(s) 310, 501, 514, 556, 918, 921
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 3 cut(s) 133, 460, 1013
BstYI RGATCY 3 cut(s) 133, 460, 1013
BsuI GTATCC 1 cut(s) 747
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 1081
BtsCI GGATG 5 cut(s) 252, 617, 642, 950, 1050
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 280, 436
Cac8I GCNNGC 6 cut(s) 494, 540, 654, 696, 904, 924
CfoI GCGC 3 cut(s) 429, 544, 946
Cfr10I RCCGGY 2 cut(s) 902, 926
Cfr13I GGNCC 5 cut(s) 20, 269, 349, 350, 434
CsiI ACCWGGT 1 cut(s) 22
Csp6I GTAC 2 cut(s) 684, 965
CviAII CATG 2 cut(s) 748, 831
CviQI GTAC 2 cut(s) 684, 965
DdeI CTNAG 1 cut(s) 846
DpnI GATC 4 cut(s) 135, 343, 462, 1015
DpnII GATC 4 cut(s) 133, 341, 460, 1013
Eam1104I CTCTTC 2 cut(s) 474, 1087
EarI CTCTTC 2 cut(s) 474, 1087
Ecl136II GAGCTC 1 cut(s) 576
Eco24I GRGCYC 4 cut(s) 336, 353, 578, 723
Eco47I GGWCC 3 cut(s) 20, 269, 434
Eco53kI GAGCTC 1 cut(s) 576
EcoICRI GAGCTC 1 cut(s) 576
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 2 cut(s) 349, 350
EcoRII CCWGG 2 cut(s) 22, 859
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 4 cut(s) 336, 353, 578, 723
FaeI CATG 2 cut(s) 751, 834
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FaqI GGGAC 3 cut(s) 163, 255, 524
FatI CATG 2 cut(s) 747, 830
Fnu4HI GCNGC 6 cut(s) 299, 490, 503, 545, 907, 910
FokI GGATG 5 cut(s) 259, 604, 649, 937, 1057
FriOI GRGCYC 4 cut(s) 336, 353, 578, 723
Fsp4HI GCNGC 6 cut(s) 299, 490, 503, 545, 907, 910
FspBI CTAG 3 cut(s) 690, 803, 996
GlaI GCGC 3 cut(s) 428, 543, 945
GluI GCNGC 6 cut(s) 299, 490, 503, 545, 907, 910
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 1 cut(s) 351
HapII CCGG 6 cut(s) 66, 290, 816, 903, 927, 975
HhaI GCGC 3 cut(s) 429, 544, 946
Hin1II CATG 2 cut(s) 751, 834
Hin6I GCGC 3 cut(s) 427, 542, 944
HinP1I GCGC 3 cut(s) 427, 542, 944
HinfI GANTC 2 cut(s) 254, 985
HpaII CCGG 6 cut(s) 66, 290, 816, 903, 927, 975
Hpy166II GTNNAC 3 cut(s) 20, 434, 965
Hpy188I TCNGA 6 cut(s) 46, 99, 115, 376, 573, 789
Hpy188III TCNNGA 6 cut(s) 290, 329, 464, 714, 932, 989
Hpy8I GTNNAC 3 cut(s) 20, 434, 965
HpyAV CCTTC 3 cut(s) 123, 627, 929
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 2 cut(s) 453, 566
HpyCH4V TGCA 5 cut(s) 4, 298, 502, 538, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 544
HpyF3I CTNAG 1 cut(s) 846
HpySE526I ACGT 2 cut(s) 453, 566
Hsp92II CATG 2 cut(s) 751, 834
HspAI GCGC 3 cut(s) 427, 542, 944
Kpn2I TCCGGA 1 cut(s) 289
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Kzo9I GATC 4 cut(s) 133, 341, 460, 1013
LguI GCTCTTC 1 cut(s) 1087
LmnI GCTCC 5 cut(s) 331, 486, 581, 726, 899
Lsp1109I GCAGC 6 cut(s) 310, 501, 514, 556, 918, 921
LweI GCATC 4 cut(s) 328, 382, 817, 982
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 3 cut(s) 690, 803, 996
MaeII ACGT 2 cut(s) 453, 566
MaeIII GTNAC 1 cut(s) 583
MalI GATC 4 cut(s) 135, 343, 462, 1015
MboI GATC 4 cut(s) 133, 341, 460, 1013
MboII GAAGA 7 cut(s) 145, 395, 401, 491, 674, 836, 1008
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 3 cut(s) 133, 460, 1013
MhlI GDGCHC 4 cut(s) 336, 353, 578, 723
MluCI AATT 4 cut(s) 283, 497, 529, 875
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 69, 231
Mph1103I ATGCAT 1 cut(s) 832
MroI TCCGGA 1 cut(s) 289
MroNI GCCGGC 1 cut(s) 902
MseI TTAA 1 cut(s) 1059
MspA1I CMGCKG 1 cut(s) 912
MspI CCGG 6 cut(s) 66, 290, 816, 903, 927, 975
MspR9I CCNGG 4 cut(s) 24, 817, 861, 975
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 2 cut(s) 24, 861
MwoI GCNNNNNNNGC 2 cut(s) 502, 544
NaeI GCCGGC 1 cut(s) 904
NciI CCSGG 2 cut(s) 817, 975
NdeII GATC 4 cut(s) 133, 341, 460, 1013
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 2 cut(s) 751, 834
NlaIV GGNNCC 9 cut(s) 135, 271, 280, 327, 350, 351, 462, 722, 901
NmuCI GTSAC 1 cut(s) 583
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 1 cut(s) 751
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 1087
PdiI GCCGGC 1 cut(s) 904
PfeI GAWTC 1 cut(s) 985
PkrI GCNGC 6 cut(s) 300, 491, 504, 546, 908, 911
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PscI ACATGT 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 22, 859
PspGI CCWGG 2 cut(s) 22, 859
PspN4I GGNNCC 9 cut(s) 135, 271, 280, 327, 350, 351, 462, 722, 901
PspOMI GGGCCC 1 cut(s) 349
PspPI GGNCC 5 cut(s) 20, 269, 349, 350, 434
PsuI RGATCY 3 cut(s) 133, 460, 1013
RsaI GTAC 2 cut(s) 685, 966
RsaNI GTAC 2 cut(s) 684, 965
SacI GAGCTC 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 1087
SaqAI TTAA 1 cut(s) 1059
SatI GCNGC 6 cut(s) 299, 490, 503, 545, 907, 910
Sau3AI GATC 4 cut(s) 133, 341, 460, 1013
Sau96I GGNCC 5 cut(s) 20, 269, 349, 350, 434
ScaI AGTACT 1 cut(s) 685
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 4 cut(s) 24, 817, 861, 975
SduI GDGCHC 4 cut(s) 336, 353, 578, 723
SexAI ACCWGGT 1 cut(s) 22
SfaNI GCATC 4 cut(s) 328, 382, 817, 982
SfcI CTRYAG 1 cut(s) 517
SinI GGWCC 3 cut(s) 20, 269, 434
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 4 cut(s) 283, 497, 529, 875
SsiI CCGC 1 cut(s) 912
SspMI CTAG 3 cut(s) 690, 803, 996
SstI GAGCTC 1 cut(s) 578
StyD4I CCNGG 4 cut(s) 22, 815, 859, 973
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 2 cut(s) 456, 569
TaqI TCGA 2 cut(s) 257, 421
TaqII GACCGA 1 cut(s) 451
TasI AATT 4 cut(s) 283, 497, 529, 875
TatI WGTACW 2 cut(s) 683, 964
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 2 cut(s) 280, 436
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 6 cut(s) 298, 489, 502, 544, 906, 909
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 4 cut(s) 396, 459, 486, 903
TspRI CASTG 2 cut(s) 280, 436
VpaK11BI GGWCC 3 cut(s) 20, 269, 434
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 1 cut(s) 875
XceI RCATGY 1 cut(s) 751
XspI CTAG 3 cut(s) 690, 803, 996
ZrmI AGTACT 1 cut(s) 685
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.