pycom04g09950

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
12689221 .. 12693001
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09950.10

Sequence Viewer

Length: 1449 bp
ATGACAGACCCATGGCACTTGCTGATCGATCTTTCCTCATTTTCCCCAAGGGATTTGGAATTCATTGTGAAGTTCTCTGGGGAACATGGTCCAGATACCTTCAGGCAACTACTTCAATCTATTTGTCCATCAATCTTTGGTCACGAGCTTGTTAAAGCGGGAATATTGCTGGCACTCTTTGGAGGTGTGCGGAAGAATTCAAATGATCAGAACAAGGTTCCTGTTAGAGGAGACATCCATGTGATAATTGTTGGTGATCCCGGACTAGGCAAGAGCCAGCTTCTCCAAGCAGCGGCAGCCATTTCTCCACGAGGCATTTATGTGTGTGGTAATGCCACAACCAAAGCTGGCCTCACTGTTGCTGTTGTAAAGGATCCTATGACAAGTGATTATGGTTTTGAAGCTGGTGCAATGGTAATTGCAGACAGTGGGTTGTGCTGTATTGATGAGTTTGACAAAATGTCTTCAGAGCATCAGGCTCTACTGGAAGCCATGGAACAACAGTGTGTCTCAGTCGCAAAGGCTGGACTGGTGGCAAGTTTGTCGGCACGAACTTCTGTCTTAGCAGCTGCAAATCCTGTTGGTGGTCATTATAACCGTGCAAAAACAGTGAATGAAAATTTGAAAATAAGTGCTGCTCTCTTATCGCGATTTGATTTGGTTTTCATATTACTTGACAAACCTAATGAACTTTTGGATAAGCGAGTCTCAGAACACATCATGTCACTTCATGCTGGATCTGGAGAAAATTCGCCAGCTGCAAAAAAGATTCGTAGAGCATCGCAGAGTGCAGAAGGCATAGATATCAGTGGAGAAGGTGGTTCTTTGGTTTCAAGATTGAGGCTTGACCCGAAGAAGGATGAGGATTTTGTTCCATTACCAGTACAACTCCTCCGCAAGTATATTGCTTATGCAAGAACTTTTGTGTTTCCTAGGATGTCAAAGCCTGCGGCAGAAATCCTGCAAAAGTTTTACTTAAAACTGAGAGACCATGCGACATCTGCTGATAGCACACCAATAACAGCAAGGCAGTTAGAGAGTCTGGTGAGGCTGACCGAAGCTCGAGCGAGGCTAGATTTGAGAGAAGAAATAACAGCCCAAGATGCAATGGATGTGGTTGAAATCATGAGAGAATCCTTGTATGACAAGTACATTGATGAGCATGGTGTTGTGGATTTTGGTCGGAGTGGAGGGATGAGTCAACAAAAAGAAGCAAAACGGTTCTTAAGTGCCCTCAATAGGCAATCAGAGTTGCAGCAGAAAGACTGTTTTACAATTTCTGAAATATACAGTTTGGCAGATAGGATTGGTCTAAGAGTTCCAGACATCGACACATTTGTTGACAACTTAAACAGTGTTGGTTATCTACTGAAGAAAGGAGCAAAGACATACCAGGTACTATCATCGTCTTATTCTCGGAGTCAATCGTCCTCAAGGTCAAGAGGCTAA

Protein Analysis

483

Amino Acids

52.81

Weight (kDa)

7.64

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013292)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccII CGCG 1 cut(s) 649
AciI CCGC 5 cut(s) 158, 190, 293, 895, 950
AclWI GGATC 4 cut(s) 251, 368, 381, 745
AcsI RAATTY 4 cut(s) 59, 196, 619, 748
AcuI CTGAAG 3 cut(s) 85, 450, 1391
AfaI GTAC 3 cut(s) 885, 1151, 1398
AfiI CCNNNNNNNGG 6 cut(s) 227, 266, 292, 584, 856, 1239
AflII CTTAAG 1 cut(s) 1225
AgsI TTSAA 6 cut(s) 116, 201, 401, 625, 834, 1121
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 1392
AluBI AGCT 7 cut(s) 148, 280, 347, 404, 569, 758, 1061
AluI AGCT 7 cut(s) 148, 280, 347, 404, 569, 758, 1061
Alw26I GTCTC 4 cut(s) 225, 514, 712, 981
AlwI GGATC 4 cut(s) 251, 368, 381, 745
Ama87I CYCGRG 1 cut(s) 1062
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 7 cut(s) 290, 296, 566, 569, 635, 758, 1255
ApoI RAATTY 4 cut(s) 59, 196, 619, 748
AspA2I CCTAGG 1 cut(s) 932
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 266, 1057
AvaI CYCGRG 1 cut(s) 1062
AvaII GGWCC 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 932
BaeGI GKGCMC 1 cut(s) 1234
BamHI GGATCC 1 cut(s) 373
BauI CACGAG 2 cut(s) 143, 309
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 7 cut(s) 302, 308, 556, 578, 622, 745, 1267
BccI CCATC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BciT130I CCWGG 1 cut(s) 1394
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 4 cut(s) 225, 514, 712, 981
BfaI CTAG 3 cut(s) 266, 933, 1073
BfrI CTTAAG 1 cut(s) 1225
BisI GCNGC 9 cut(s) 291, 294, 297, 567, 570, 636, 759, 951, 1256
BlnI CCTAGG 1 cut(s) 932
BlsI GCNGC 9 cut(s) 292, 295, 298, 568, 571, 637, 760, 952, 1257
Bme1390I CCNGG 2 cut(s) 261, 1394
Bme18I GGWCC 1 cut(s) 89
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 1062
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 219, 375
BmrFI CCNGG 2 cut(s) 261, 1394
BmsI GCATC 3 cut(s) 481, 788, 1093
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 1417
BpuMI CCSGG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 981
BsaJI CCNNGG 4 cut(s) 11, 47, 492, 932
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 6 cut(s) 227, 266, 292, 584, 856, 1239
Bse1I ACTGG 3 cut(s) 489, 534, 881
Bse3DI GCAATG 2 cut(s) 417, 1113
BseBI CCWGG 1 cut(s) 1394
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 11, 47, 492, 932
BseGI GGATG 5 cut(s) 234, 865, 942, 1117, 1200
BseLI CCNNNNNNNGG 6 cut(s) 227, 266, 292, 584, 856, 1239
BseMI GCAATG 2 cut(s) 417, 1113
BseMII CTCAG 3 cut(s) 525, 723, 974
BseNI ACTGG 3 cut(s) 489, 534, 881
BseRI GAGGAG 2 cut(s) 243, 881
BseSI GKGCMC 1 cut(s) 1234
BseXI GCAGC 7 cut(s) 302, 308, 556, 578, 622, 745, 1267
BsgI GTGCAG 1 cut(s) 810
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 6 cut(s) 227, 266, 292, 584, 856, 1239
BsmAI GTCTC 4 cut(s) 225, 514, 712, 981
BsnI GGCC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 981
BsoBI CYCGRG 1 cut(s) 1062
Bsp1286I GDGCHC 1 cut(s) 1234
Bsp143I GATC 6 cut(s) 24, 28, 205, 256, 373, 737
Bsp19I CCATGG 2 cut(s) 11, 492
Bsp68I TCGCGA 1 cut(s) 649
BspACI CCGC 5 cut(s) 158, 190, 293, 895, 950
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 3 cut(s) 524, 722, 975
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 1 cut(s) 649
BspHI TCATGA 1 cut(s) 1125
BspLI GGNNCC 2 cut(s) 219, 375
BspPI GGATC 4 cut(s) 251, 368, 381, 745
BspTI CTTAAG 1 cut(s) 1225
BspTNI GGTCTC 1 cut(s) 981
BsrDI GCAATG 2 cut(s) 417, 1113
BsrI ACTGG 3 cut(s) 489, 534, 881
BssECI CCNNGG 4 cut(s) 11, 47, 492, 932
BssMI GATC 6 cut(s) 24, 28, 205, 256, 373, 737
BssSI CACGAG 2 cut(s) 143, 309
BssT1I CCWWGG 4 cut(s) 11, 47, 492, 932
Bst2BI CACGAG 2 cut(s) 143, 309
Bst2UI CCWGG 1 cut(s) 1394
Bst4CI ACNGT 9 cut(s) 358, 428, 504, 599, 610, 1221, 1268, 1292, 1355
BstAFI CTTAAG 1 cut(s) 1225
BstC8I GCNNGC 5 cut(s) 171, 278, 349, 756, 948
BstDEI CTNAG 5 cut(s) 511, 562, 709, 983, 1313
BstDSI CCRYGG 2 cut(s) 11, 492
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 5 cut(s) 234, 865, 942, 1117, 1200
BstFNI CGCG 1 cut(s) 649
BstKTI GATC 6 cut(s) 27, 31, 208, 259, 376, 740
BstMAI GTCTC 4 cut(s) 225, 514, 712, 981
BstMBI GATC 6 cut(s) 24, 28, 205, 256, 373, 737
BstMWI GCNNNNNNNGC 3 cut(s) 296, 1001, 1103
BstNI CCWGG 1 cut(s) 1394
BstSCI CCNGG 2 cut(s) 259, 1392
BstSLI GKGCMC 1 cut(s) 1234
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 7 cut(s) 302, 308, 556, 578, 622, 745, 1267
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 2 cut(s) 373, 737
BstYI RGATCY 2 cut(s) 373, 737
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 2 cut(s) 11, 492
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 5 cut(s) 234, 865, 942, 1117, 1200
BtsIMutI CAGTG 6 cut(s) 354, 433, 509, 615, 814, 1360
BtuMI TCGCGA 1 cut(s) 649
Cac8I GCNNGC 5 cut(s) 171, 278, 349, 756, 948
CciI TCATGA 1 cut(s) 1125
Cfr13I GGNCC 1 cut(s) 89
ClaI ATCGAT 1 cut(s) 27
CsiI ACCWGGT 1 cut(s) 1392
Csp6I GTAC 3 cut(s) 884, 1150, 1397
CspCI CAANNNNNGTGG 2 cut(s) 1095, 1130
CviAII CATG 9 cut(s) 12, 86, 239, 493, 721, 731, 992, 1126, 1163
CviQI GTAC 3 cut(s) 884, 1150, 1397
DdeI CTNAG 5 cut(s) 511, 562, 709, 983, 1313
DpnI GATC 6 cut(s) 26, 30, 207, 258, 375, 739
DpnII GATC 6 cut(s) 24, 28, 205, 256, 373, 737
DriI GACNNNNNGTC 1 cut(s) 460
Eam1105I GACNNNNNGTC 1 cut(s) 460
Eco130I CCWWGG 4 cut(s) 11, 47, 492, 932
Eco31I GGTCTC 1 cut(s) 981
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 3 cut(s) 85, 450, 1391
Eco88I CYCGRG 1 cut(s) 1062
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoRI GAATTC 2 cut(s) 59, 196
EcoRII CCWGG 1 cut(s) 1392
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 4 cut(s) 11, 47, 492, 932
ErhI CCWWGG 4 cut(s) 11, 47, 492, 932
FaeI CATG 9 cut(s) 15, 89, 242, 496, 724, 734, 995, 1129, 1166
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FatI CATG 9 cut(s) 11, 85, 238, 492, 720, 730, 991, 1125, 1162
FauI CCCGC 1 cut(s) 151
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 9 cut(s) 291, 294, 297, 567, 570, 636, 759, 951, 1256
FokI GGATG 5 cut(s) 221, 872, 949, 1124, 1207
Fsp4HI GCNGC 9 cut(s) 291, 294, 297, 567, 570, 636, 759, 951, 1256
FspBI CTAG 3 cut(s) 266, 933, 1073
GluI GCNGC 9 cut(s) 291, 294, 297, 567, 570, 636, 759, 951, 1256
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 261
Hin1II CATG 9 cut(s) 15, 89, 242, 496, 724, 734, 995, 1129, 1166
HincII GTYRAC 2 cut(s) 1202, 1342
HindII GTYRAC 2 cut(s) 1202, 1342
HinfI GANTC 6 cut(s) 705, 769, 1039, 1133, 1198, 1420
HpaII CCGG 1 cut(s) 261
HphI GGTGA 2 cut(s) 266, 1057
Hpy166II GTNNAC 2 cut(s) 1202, 1342
Hpy188I TCNGA 7 cut(s) 210, 469, 712, 1185, 1249, 1282, 1419
Hpy188III TCNNGA 8 cut(s) 92, 143, 648, 741, 834, 1126, 1322, 1440
Hpy8I GTNNAC 2 cut(s) 1202, 1342
HpyAV CCTTC 4 cut(s) 109, 788, 809, 850
HpyCH4III ACNGT 9 cut(s) 358, 428, 504, 599, 610, 1221, 1268, 1292, 1355
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 1001, 1103
HpyF3I CTNAG 5 cut(s) 511, 562, 709, 983, 1313
Hsp92II CATG 9 cut(s) 15, 89, 242, 496, 724, 734, 995, 1129, 1166
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 24, 28, 205, 256, 373, 737
LmnI GCTCC 1 cut(s) 1379
Lsp1109I GCAGC 7 cut(s) 302, 308, 556, 578, 622, 745, 1267
LweI GCATC 3 cut(s) 481, 788, 1093
MabI ACCWGGT 1 cut(s) 1392
MaeI CTAG 3 cut(s) 266, 933, 1073
MaeIII GTNAC 2 cut(s) 140, 723
MalI GATC 6 cut(s) 26, 30, 207, 258, 375, 739
MboI GATC 6 cut(s) 24, 28, 205, 256, 373, 737
MboII GAAGA 5 cut(s) 205, 456, 865, 1097, 1384
MflI RGATCY 2 cut(s) 373, 737
MhlI GDGCHC 1 cut(s) 1234
MluCI AATT 7 cut(s) 59, 196, 246, 417, 619, 748, 1275
MlyI GAGTC 4 cut(s) 714, 1048, 1207, 1429
MmeI TCCRAC 1 cut(s) 1163
MseI TTAA 4 cut(s) 153, 977, 1226, 1349
MslI CAYNNNNRTG 2 cut(s) 239, 320
MspA1I CMGCKG 3 cut(s) 293, 569, 758
MspCI CTTAAG 1 cut(s) 1225
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 261, 1394
MvaI CCWGG 1 cut(s) 1394
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 3 cut(s) 296, 1001, 1103
NciI CCSGG 1 cut(s) 261
NcoI CCATGG 2 cut(s) 11, 492
NdeII GATC 6 cut(s) 24, 28, 205, 256, 373, 737
NlaIII CATG 9 cut(s) 15, 89, 242, 496, 724, 734, 995, 1129, 1166
NlaIV GGNNCC 2 cut(s) 219, 375
NmuCI GTSAC 2 cut(s) 140, 723
NruI TCGCGA 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 1062
PagI TCATGA 1 cut(s) 1125
PfeI GAWTC 2 cut(s) 769, 1133
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 9 cut(s) 292, 295, 298, 568, 571, 637, 760, 952, 1257
PleI GAGTC 4 cut(s) 713, 1047, 1206, 1428
PpsI GAGTC 4 cut(s) 713, 1047, 1206, 1428
PsiI TTATAA 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 1392
PspGI CCWGG 1 cut(s) 1392
PspN4I GGNNCC 2 cut(s) 219, 375
PspPI GGNCC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 1062
PsuI RGATCY 2 cut(s) 373, 737
PvuII CAGCTG 2 cut(s) 569, 758
RruI TCGCGA 1 cut(s) 649
RsaI GTAC 3 cut(s) 885, 1151, 1398
RsaNI GTAC 3 cut(s) 884, 1150, 1397
RseI CAYNNNNRTG 2 cut(s) 239, 320
SaqAI TTAA 4 cut(s) 153, 977, 1226, 1349
SatI GCNGC 9 cut(s) 291, 294, 297, 567, 570, 636, 759, 951, 1256
Sau3AI GATC 6 cut(s) 24, 28, 205, 256, 373, 737
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 4 cut(s) 714, 1048, 1207, 1429
ScrFI CCNGG 2 cut(s) 261, 1394
SduI GDGCHC 1 cut(s) 1234
SexAI ACCWGGT 1 cut(s) 1392
SfaNI GCATC 3 cut(s) 481, 788, 1093
Sfr274I CTCGAG 1 cut(s) 1062
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 1062
SmiMI CAYNNNNRTG 2 cut(s) 239, 320
SmlI CTYRAG 3 cut(s) 1062, 1225, 1432
SmoI CTYRAG 3 cut(s) 1062, 1225, 1432
Sse9I AATT 7 cut(s) 59, 196, 246, 417, 619, 748, 1275
SsiI CCGC 5 cut(s) 158, 190, 293, 895, 950
SspI AATATT 1 cut(s) 165
SspMI CTAG 3 cut(s) 266, 933, 1073
StyD4I CCNGG 2 cut(s) 259, 1392
StyI CCWWGG 4 cut(s) 11, 47, 492, 932
TaaI ACNGT 9 cut(s) 358, 428, 504, 599, 610, 1221, 1268, 1292, 1355
TaqI TCGA 3 cut(s) 27, 1063, 1329
TaqII GACCGA 1 cut(s) 1070
TasI AATT 7 cut(s) 59, 196, 246, 417, 619, 748, 1275
TatI WGTACW 2 cut(s) 883, 1149
TauI GCSGC 2 cut(s) 296, 953
TfiI GAWTC 2 cut(s) 769, 1133
Tru1I TTAA 4 cut(s) 153, 977, 1226, 1349
Tru9I TTAA 4 cut(s) 153, 977, 1226, 1349
TscAI CASTG 6 cut(s) 361, 433, 509, 615, 814, 1360
TseFI GTSAC 2 cut(s) 140, 723
TseI GCWGC 7 cut(s) 290, 296, 566, 569, 635, 758, 1255
Tsp45I GTSAC 2 cut(s) 140, 723
TspDTI ATGAA 5 cut(s) 52, 630, 655, 702, 719
TspRI CASTG 6 cut(s) 361, 433, 509, 615, 814, 1360
Vha464I CTTAAG 1 cut(s) 1225
VpaK11BI GGWCC 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 225
XapI RAATTY 4 cut(s) 59, 196, 619, 748
XhoI CTCGAG 1 cut(s) 1062
XmaJI CCTAGG 1 cut(s) 932
XspI CTAG 3 cut(s) 266, 933, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.