Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013292

Physical Location & Seq

Genomic Coordinates Reverse (-)

14652803 .. 14659250

Gene Structure 6448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGTCTTTGAAAGAGAGAGAGATAGGAGAGAAACTTTTGAACGCACCACCGTTTTTGGCATACATCATTCATTTTCTCCCGCCAAAACCCGGGGACGAACACACCTGCGCTTCAGAAGCGGAATCTCGATCGGAGATGTACGGCGCGGCGGGGAAGAGCACGAGCTCGAGCTACGGCGCTTCATACGCGTCTGGGCTCAGCGAGATCTGGGCCGCGTACTTGGCCCAAATCGAGCTCGGCGACGACAAACCCTGGCTCAACCTCACACGCTCCCTCGTCAGCTTCCTCACTACGCCGCCGGGCCAAGCTCTTCTCTCTCAGGTCAAGGACGAGGACGGCGTGGTTGCGGTGTGGGTTGACTTTGAGAAATTTCGGAAAGAGTGTGAAGTTGAGGAGTTTTATGAAGCGTTGGAGGAGAAGCCGAAGGTAACCCTACTGTGCATGAGTATTGCAGTGCACAAGGTTCTGTTGACTCAATGGGAAAGTGATAGAATGGAGGATGATATCCGAGTTAATATTCGGTTGCATAACTACCCGGAATCGATGATTGCTTTGAAGAACTTAAAAGCTGCTTATATAGACAAGCTTGTATCTGTGCGCGGTAGTGTAGTAAAAGTTAGCACTGTGAGGCCTTTTGTGGTGCAAATGGATTTTGACTGTGTGAAGTGTAAGACGAGCATTACGCGTATGTTCCCTGATGGGAAGTTTTCCCCACCATCGAAATGTGATCTTCATGGGTGCAAGAGCAGAACTTTTATTCCAAATCGATCTACTGCTCAAACGATAGATTTTCAAAAGATAAGGATACAGGAGCTGCTGAAGCCTGAGGATCATGAAGAAGGACGGGTGCCTCGAACAGTAGAATGTGAACTTCTTGAAGATCTTGTTGATGCATGCATCCCTGGAGATGTGGTGACTGTCACTGGGATAATAAGAGTCATTAACAATTACATGGACATTGGGGGAGGAAAATCGAAAGGCAAAAGTCAGGGAATTTACTATTTGTATCTAGAAGCTGTTTCAATTAAAAACTCCAAGTCGCAGTCTATGCCTGAAGGTGTACAAGATTCTAGTTCTAATGCTGGGTCTGTAGCACTTGTTGACTCATTTTCCCCAAGGGATTTGGAATTCATTGTCAAGTTCTCGGAGGAACATGGTCCAGATACCTTCCGGCAACTAATCCAATCTATCTGTCCATCCATCTATGGCCATGAGCTCGTTAAAGCGGGGATAATACTGGCACTCTTTGGAGGTGTAAGGAAGCACTCAAATGATCAAAACAAGGTTCCTGTTAGAGGAGACATTCATGTCATTATTGTTGGTGATCCTGGACTAGGAAAGAGCCAAATACTTCAAGCAGCAGCAGCTGTTTCTCCGCGAGGCATTTATGTATGTGGTAATGCCACAACCAGAGCTGGGCTCACTGTAGCTGTTGTAAAGGATTCTATGACAAGTGATTATGCGTTTGAAGCAGGTGCTATGGTACTTGCAGATAGTGGTTTGTGCTGCATTGATGAGTTCGACAAAATGACTTCAGAGCATCAGGCCCTACTGGAAGCCATGGAACAACAGTGTGTGTCTATTGCGAAGGCTGGATTAGTGGCAAGTCTGTCAGCACGAACTTCTGTCTTAGCTGCAGCAAACCCTGTTGGTGGTCATTATAACCGTGCCAAAACTGTGAATGAAAATCTGAAAATAAGTGCTGCTCTCCTCTCACGATTTGATTTGGTTTTCATATTACTTGACAAACCTGATGAACTCTTGGATAAACGAGTCTCAGAGCACATTATGTCACTTCATACTGGATATGGAGAGCATTCGCCAGCTGCAAAAAAGATTCATAGAGAAAATGCAGCATCACAAAGTGCAGAAGGCATAGATATGAGCGGAGGTCGTTCTTTGATTTCAAGGTTGAGGCTTGACCCAAAGAAGGATGCTGATTTTGTTCCATTACCCATGCAACTTCTTCGCAAGTATATTGCTTATGCAAAAACGTTTGTCTTTCCAAGGATGTCAAAGCCGGCAGCAGAAATCCTGCAGAAATTTTACTTGAAACTGAGAGACCATGCTACATCTGCTGATAGCACACCAATAACAGCAAGGCAACTGGAGAGTCTGGTGAGGCTGACAGAAGCTCGAGCTAGGTTAGATTTAAGGGAGGAAATTACAGCCCAAGATGCAACGGAAGTGGTTGAAATCATGAGAGAATCCTTGTATGACAAGTACATTGATGAGCATGGTGTTGTGGATTTTGGTCGGAGTGGAGGGATGAGTCAACAAAAAGAAGCGAAGCGGTTTTTAAGTGCCCTTAATAAGCAATCAGAGTTGCACCAAAAAGACACTTTCTCAATTTCTGAAATATACAGTTTGGCAGATAGGATTGGCCTAAGAGTTCCAGACATTGACACATTCGTTGATAACTTAAACAGTGTTGGCTATCTACTCAAGAAGGGGGGGAAGACATACCAGCTACTATCATCATCTTATTCTAGGAGTCAATCATCATCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034641 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097362 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM MCM_OB

Protein Analysis

837

Amino Acids

92.47

Weight (kDa)

6.22

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	185 - 314	7.1e-29	MCM OB domain
MCM	PF00493	386 - 600	2.6e-90	MCM P-loop domain
AAA_5	PF07728	436 - 574	2.2e-07	AAA domain (dynein-related subfamily)
MCM_lid	PF17855	655 - 738	4.2e-26	MCM AAA-lid domain
WHD_MCM8	PF25051	750 - 825	3.8e-30	MCM8 winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09660 AT3G09660 AT3G09660
fragaria_vesca	FvH4_6g15280 FvH4_6g15280
malus_domestica	MD04G1104500.v1.1
prunus_persica	Prupe.6G241500_v2.0.a1 Prupe.6G241500_v2.0.a1
pyrus_communis	pycom04g09950
rosa_chinensis	RchiOBHm_Chr3g0468711
rosa_laevigata	RLG00000024414
rosa_multiflora	Rmu_sc0011538.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412640
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145200 Rh3BG167800 Rh3DG166500
rosa_wichuraiana	Rw3G013700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1662
AarI	CACCTGC	2 cut(s)	113, 1463
AasI	GACNNNNNNGTC	1 cut(s)	1307
Acc36I	ACCTGC	2 cut(s)	113, 1463
AccB1I	GGYRCC	1 cut(s)	847
AccBSI	CCGCTC	1 cut(s)	1887
AccII	CGCG	6 cut(s)	146, 188, 215, 600, 685, 1378
AclI	AACGTT	1 cut(s)	1994
AclWI	GGATC	2 cut(s)	837, 1319
AcoI	YGGCCR	1 cut(s)	1207
AcsI	RAATTY	4 cut(s)	368, 993, 1127, 2042
AcuI	CTGAAG	4 cut(s)	96, 839, 1074, 1518
AdeI	CACNNNGTG	1 cut(s)	1865
AfaI	GTAC	5 cut(s)	140, 218, 1062, 1485, 2225
AfiI	CCNNNNNNNGG	6 cut(s)	89, 1295, 1334, 1416, 1652, 1930
AflIII	ACRYGT	2 cut(s)	186, 683
AjnI	CCWGG	3 cut(s)	251, 901, 1327
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
Alw21I	GWGCWC	6 cut(s)	161, 167, 237, 459, 1218, 1785
Alw26I	GTCTC	3 cut(s)	1293, 1780, 2055
Alw44I	GTGCAC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	837, 1319
AlwNI	CAGNNNCTG	2 cut(s)	814, 1367
Ama87I	CYCGRG	3 cut(s)	89, 166, 2136
AoxI	GGCC	7 cut(s)	210, 222, 301, 629, 1207, 1545, 2383
ApaLI	GTGCAC	1 cut(s)	455
ApoI	RAATTY	4 cut(s)	368, 993, 1127, 2042
AspLEI	GCGC	4 cut(s)	110, 146, 179, 600
AspS9I	GGNCC	5 cut(s)	210, 223, 301, 1157, 1546
AsuC2I	CCSGG	4 cut(s)	90, 91, 300, 536
AsuHPI	GGTGA	3 cut(s)	925, 1334, 2131
AvaI	CYCGRG	3 cut(s)	89, 166, 2136
AvaII	GGWCC	1 cut(s)	1157
AxyI	CCTNAGG	1 cut(s)	825
BaeGI	GKGCMC	2 cut(s)	459, 2308
BalI	TGGCCA	1 cut(s)	1209
BanI	GGYRCC	1 cut(s)	847
BanII	GRGCYC	5 cut(s)	167, 198, 237, 1218, 1422
BauI	CACGAG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	2465
Bbv12I	GWGCWC	6 cut(s)	161, 167, 237, 459, 1218, 1785
BccI	CCATC	4 cut(s)	692, 724, 1204, 1208
BceAI	ACGGC	3 cut(s)	157, 190, 352
BcgI	CGANNNNNNTGC	2 cut(s)	1949, 1983
BciT130I	CCWGG	3 cut(s)	253, 903, 1329
BciVI	GTATCC	1 cut(s)	798
BclI	TGATCA	1 cut(s)	1273
BcnI	CCSGG	4 cut(s)	90, 91, 300, 536
BcoDI	GTCTC	3 cut(s)	1293, 1780, 2055
BfaI	CTAG	5 cut(s)	1010, 1071, 1334, 2142, 2490
BfmI	CTRYAG	4 cut(s)	1089, 1425, 1635, 2036
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	2 cut(s)	113, 1463
BfuI	GTATCC	1 cut(s)	798
BglII	AGATCT	2 cut(s)	204, 880
BlpI	GCTNAGC	1 cut(s)	197
Bme1390I	CCNGG	7 cut(s)	90, 91, 253, 300, 536, 903, 1329
Bme18I	GGWCC	1 cut(s)	1157
BmeT110I	CYCGRG	3 cut(s)	89, 166, 2136
BmgT120I	GGNCC	5 cut(s)	210, 223, 301, 1157, 1546
BmiI	GGNNCC	2 cut(s)	849, 1287
BmrFI	CCNGG	7 cut(s)	90, 91, 253, 300, 536, 903, 1329
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	6 cut(s)	880, 906, 1549, 1865, 1924, 2167
BmuI	ACTGGG	1 cut(s)	933
BpiI	GAAGAC	1 cut(s)	2465
BplI	GAGNNNNNCTC	2 cut(s)	1404, 1436
BpmI	CTGGAG	2 cut(s)	924, 2129
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	2429
BpuMI	CCSGG	4 cut(s)	90, 91, 300, 536
Bsa29I	ATCGAT	2 cut(s)	542, 766
BsaI	GGTCTC	1 cut(s)	2055
BsaJI	CCNNGG	7 cut(s)	89, 90, 251, 901, 1115, 1560, 2006
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 1295, 1334, 1416, 1652, 1930
Bse118I	RCCGGY	1 cut(s)	2020
Bse1I	ACTGG	5 cut(s)	928, 1242, 1557, 1807, 2112
Bse21I	CCTNAGG	1 cut(s)	825
BseBI	CCWGG	3 cut(s)	253, 903, 1329
BseCI	ATCGAT	2 cut(s)	542, 766
BseDI	CCNNGG	7 cut(s)	89, 90, 251, 901, 1115, 1560, 2006
BseGI	GGATG	6 cut(s)	505, 897, 1196, 1939, 2016, 2274
BseLI	CCNNNNNNNGG	6 cut(s)	89, 1295, 1334, 1416, 1652, 1930
BseMII	CTCAG	5 cut(s)	211, 332, 816, 1791, 2048
BseNI	ACTGG	5 cut(s)	928, 1242, 1557, 1807, 2112
BseRI	GAGGAG	4 cut(s)	407, 428, 1311, 1700
BseSI	GKGCMC	2 cut(s)	459, 2308
BseYI	CCCAGC	2 cut(s)	1082, 1415
BsgI	GTGCAG	1 cut(s)	1887
Bsh1236I	CGCG	6 cut(s)	146, 188, 215, 600, 685, 1378
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	7 cut(s)	212, 224, 303, 631, 1209, 1547, 2385
BshNI	GGYRCC	1 cut(s)	847
BshVI	ATCGAT	2 cut(s)	542, 766
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	6 cut(s)	161, 167, 237, 459, 1218, 1785
BsiHKCI	CYCGRG	3 cut(s)	89, 166, 2136
BsiSI	CCGG	5 cut(s)	90, 299, 536, 1171, 2021
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	6 cut(s)	89, 1295, 1334, 1416, 1652, 1930
BsmAI	GTCTC	3 cut(s)	1293, 1780, 2055
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	1816
BsnI	GGCC	7 cut(s)	212, 224, 303, 631, 1209, 1547, 2385
Bso31I	GGTCTC	1 cut(s)	2055
BsoBI	CYCGRG	3 cut(s)	89, 166, 2136
Bsp1286I	GDGCHC	9 cut(s)	161, 167, 198, 237, 459, 1218, 1422, 1785, 2308
Bsp1407I	TGTACA	1 cut(s)	1060
Bsp143I	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
Bsp1720I	GCTNAGC	1 cut(s)	197
Bsp19I	CCATGG	1 cut(s)	1560
BspANI	GGCC	7 cut(s)	212, 224, 303, 631, 1209, 1547, 2385
BspCNI	CTCAG	5 cut(s)	210, 331, 817, 1790, 2049
BspDI	ATCGAT	2 cut(s)	542, 766
BspFNI	CGCG	6 cut(s)	146, 188, 215, 600, 685, 1378
BspHI	TCATGA	2 cut(s)	832, 2199
BspLI	GGNNCC	2 cut(s)	849, 1287
BspMAI	CTGCAG	2 cut(s)	1639, 2040
BspMI	ACCTGC	2 cut(s)	113, 1463
BspPI	GGATC	2 cut(s)	837, 1319
BspQI	GCTCTTC	2 cut(s)	149, 315
BspT107I	GGYRCC	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	2055
BsrBI	CCGCTC	1 cut(s)	1887
BsrFI	RCCGGY	1 cut(s)	2020
BsrGI	TGTACA	1 cut(s)	1060
BsrI	ACTGG	5 cut(s)	928, 1242, 1557, 1807, 2112
BssAI	RCCGGY	1 cut(s)	2020
BssECI	CCNNGG	7 cut(s)	89, 90, 251, 901, 1115, 1560, 2006
BssMI	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	3 cut(s)	1115, 1560, 2006
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	3 cut(s)	253, 903, 1329
Bst6I	CTCTTC	2 cut(s)	149, 315
BstAPI	GCANNNNNTGC	1 cut(s)	1048
BstAUI	TGTACA	1 cut(s)	1060
BstC8I	GCNNGC	3 cut(s)	895, 1824, 2022
BstDEI	CTNAG	7 cut(s)	197, 318, 825, 1630, 1777, 2057, 2387
BstDSI	CCRYGG	1 cut(s)	1560
BstEII	GGTNACC	1 cut(s)	427
BstENI	CCTNNNNNAGG	2 cut(s)	1293, 1332
BstF5I	GGATG	6 cut(s)	505, 897, 1196, 1939, 2016, 2274
BstFNI	CGCG	6 cut(s)	146, 188, 215, 600, 685, 1378
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	4 cut(s)	110, 146, 179, 600
BstKTI	GATC	8 cut(s)	131, 207, 730, 770, 832, 883, 1276, 1327
BstMAI	GTCTC	3 cut(s)	1293, 1780, 2055
BstMBI	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 185, 221, 820, 1048, 1364, 1469, 2075, 2177
BstNI	CCWGG	3 cut(s)	253, 903, 1329
BstNSI	RCATGY	1 cut(s)	897
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	7 cut(s)	88, 89, 251, 298, 534, 901, 1327
BstSFI	CTRYAG	4 cut(s)	1089, 1425, 1635, 2036
BstSLI	GKGCMC	2 cut(s)	459, 2308
BstUI	CGCG	6 cut(s)	146, 188, 215, 600, 685, 1378
BstV2I	GAAGAC	1 cut(s)	2465
BstX2I	RGATCY	2 cut(s)	204, 880
BstYI	RGATCY	2 cut(s)	204, 880
Bsu15I	ATCGAT	2 cut(s)	542, 766
Bsu36I	CCTNAGG	1 cut(s)	825
BsuI	GTATCC	1 cut(s)	798
BsuRI	GGCC	7 cut(s)	212, 224, 303, 631, 1209, 1547, 2385
BsuTUI	ATCGAT	2 cut(s)	542, 766
BtgI	CCRYGG	1 cut(s)	1560
BtsCI	GGATG	6 cut(s)	505, 897, 1196, 1939, 2016, 2274
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	6 cut(s)	459, 621, 921, 1422, 1577, 2434
BveI	ACCTGC	2 cut(s)	113, 1463
Cac8I	GCNNGC	3 cut(s)	895, 1824, 2022
CaiI	CAGNNNCTG	2 cut(s)	814, 1367
CciI	TCATGA	2 cut(s)	832, 2199
CfoI	GCGC	4 cut(s)	110, 146, 179, 600
Cfr10I	RCCGGY	1 cut(s)	2020
Cfr13I	GGNCC	5 cut(s)	210, 223, 301, 1157, 1546
Cfr9I	CCCGGG	1 cut(s)	89
ClaI	ATCGAT	2 cut(s)	542, 766
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	5 cut(s)	139, 217, 1061, 1484, 2224
CspCI	CAANNNNNGTGG	4 cut(s)	36, 71, 2169, 2204
CviQI	GTAC	5 cut(s)	139, 217, 1061, 1484, 2224
DdeI	CTNAG	7 cut(s)	197, 318, 825, 1630, 1777, 2057, 2387
DpnI	GATC	8 cut(s)	130, 206, 729, 769, 831, 882, 1275, 1326
DpnII	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
DraIII	CACNNNGTG	1 cut(s)	1865
DrdI	GACNNNNNNGTC	1 cut(s)	1307
DseDI	GACNNNNNNGTC	1 cut(s)	1307
EaeI	YGGCCR	1 cut(s)	1207
Eam1104I	CTCTTC	2 cut(s)	149, 315
EarI	CTCTTC	2 cut(s)	149, 315
Ecl136II	GAGCTC	3 cut(s)	165, 235, 1216
Eco130I	CCWWGG	3 cut(s)	1115, 1560, 2006
Eco147I	AGGCCT	1 cut(s)	631
Eco24I	GRGCYC	5 cut(s)	167, 198, 237, 1218, 1422
Eco31I	GGTCTC	1 cut(s)	2055
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	1157
Eco53kI	GAGCTC	3 cut(s)	165, 235, 1216
Eco57I	CTGAAG	4 cut(s)	96, 839, 1074, 1518
Eco81I	CCTNAGG	1 cut(s)	825
Eco88I	CYCGRG	3 cut(s)	89, 166, 2136
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	3 cut(s)	165, 235, 1216
EcoNI	CCTNNNNNAGG	2 cut(s)	1293, 1332
EcoO109I	RGGNCCY	1 cut(s)	1546
EcoO65I	GGTNACC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	1127
EcoRII	CCWGG	3 cut(s)	251, 901, 1327
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	3 cut(s)	1115, 1560, 2006
EcoT22I	ATGCAT	2 cut(s)	895, 899
EcoT38I	GRGCYC	5 cut(s)	167, 198, 237, 1218, 1422
ErhI	CCWWGG	3 cut(s)	1115, 1560, 2006
FaqI	GGGAC	1 cut(s)	107
FauI	CCCGC	3 cut(s)	87, 142, 1219
FbaI	TGATCA	1 cut(s)	1273
FokI	GGATG	6 cut(s)	512, 884, 1183, 1946, 2023, 2281
FriOI	GRGCYC	5 cut(s)	167, 198, 237, 1218, 1422
FspBI	CTAG	5 cut(s)	1010, 1071, 1334, 2142, 2490
GlaI	GCGC	4 cut(s)	109, 145, 178, 599
GsaI	CCCAGC	2 cut(s)	1086, 1419
GsuI	CTGGAG	2 cut(s)	924, 2129
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	7 cut(s)	212, 224, 303, 631, 1209, 1547, 2385
HapII	CCGG	5 cut(s)	90, 299, 536, 1171, 2021
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	4 cut(s)	110, 146, 179, 600
Hin6I	GCGC	4 cut(s)	108, 144, 177, 598
HinP1I	GCGC	4 cut(s)	108, 144, 177, 598
HincII	GTYRAC	4 cut(s)	358, 471, 1102, 2276
HindII	GTYRAC	4 cut(s)	358, 471, 1102, 2276
HindIII	AAGCTT	1 cut(s)	584
HpaII	CCGG	5 cut(s)	90, 299, 536, 1171, 2021
HphI	GGTGA	3 cut(s)	925, 1334, 2131
Hpy166II	GTNNAC	7 cut(s)	358, 457, 471, 869, 1061, 1102, 2276
Hpy188III	TCNNGA	9 cut(s)	126, 833, 875, 1010, 1160, 1716, 2200, 2396, 2446
Hpy8I	GTNNAC	7 cut(s)	358, 457, 471, 869, 1061, 1102, 2276
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	8 cut(s)	418, 833, 1049, 1177, 1582, 1865, 1924, 2443
HpyCH4IV	ACGT	1 cut(s)	1994
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 185, 221, 820, 1048, 1364, 1469, 2075, 2177
HpyF3I	CTNAG	7 cut(s)	197, 318, 825, 1630, 1777, 2057, 2387
HpySE526I	ACGT	1 cut(s)	1994
HspAI	GCGC	4 cut(s)	108, 144, 177, 598
KroI	GCCGGC	1 cut(s)	2020
KroNI	GCCGGC	1 cut(s)	2022
Ksp22I	TGATCA	1 cut(s)	1273
Kzo9I	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
LguI	GCTCTTC	2 cut(s)	149, 315
LmnI	GCTCC	2 cut(s)	275, 811
LweI	GCATC	6 cut(s)	880, 906, 1549, 1865, 1924, 2167
MaeI	CTAG	5 cut(s)	1010, 1071, 1334, 2142, 2490
MaeII	ACGT	1 cut(s)	1994
MaeIII	GTNAC	4 cut(s)	427, 913, 919, 1791
MalI	GATC	8 cut(s)	130, 206, 729, 769, 831, 882, 1275, 1326
MbiI	CCGCTC	1 cut(s)	1887
MboI	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
MboII	GAAGA	8 cut(s)	166, 302, 568, 722, 848, 890, 1958, 2470
MflI	RGATCY	2 cut(s)	204, 880
MhlI	GDGCHC	9 cut(s)	161, 167, 198, 237, 459, 1218, 1422, 1785, 2308
MlsI	TGGCCA	1 cut(s)	1209
MluCI	AATT	8 cut(s)	368, 946, 993, 1023, 1127, 2042, 2163, 2349
MluI	ACGCGT	2 cut(s)	186, 683
MluNI	TGGCCA	1 cut(s)	1209
MlyI	GAGTC	7 cut(s)	466, 945, 1097, 1782, 2122, 2281, 2503
MmeI	TCCRAC	2 cut(s)	390, 2237
Mox20I	TGGCCA	1 cut(s)	1209
Mph1103I	ATGCAT	2 cut(s)	895, 899
MroNI	GCCGGC	1 cut(s)	2020
MscI	TGGCCA	1 cut(s)	1209
MseI	TTAA	9 cut(s)	513, 563, 942, 1026, 1221, 2153, 2300, 2310, 2423
MslI	CAYNNNNRTG	4 cut(s)	721, 1269, 1880, 2509
Msp20I	TGGCCA	1 cut(s)	1209
MspA1I	CMGCKG	2 cut(s)	1367, 1826
MspI	CCGG	5 cut(s)	90, 299, 536, 1171, 2021
MspR9I	CCNGG	7 cut(s)	90, 91, 253, 300, 536, 903, 1329
Mva1269I	GAATGC	1 cut(s)	1816
MvaI	CCWGG	3 cut(s)	253, 903, 1329
MvnI	CGCG	6 cut(s)	146, 188, 215, 600, 685, 1378
MwoI	GCNNNNNNNGC	9 cut(s)	116, 185, 221, 820, 1048, 1364, 1469, 2075, 2177
NaeI	GCCGGC	1 cut(s)	2022
NciI	CCSGG	4 cut(s)	90, 91, 300, 536
NcoI	CCATGG	1 cut(s)	1560
NdeII	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
NgoMIV	GCCGGC	1 cut(s)	2020
NlaIV	GGNNCC	2 cut(s)	849, 1287
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	913, 919, 1791
NsiI	ATGCAT	2 cut(s)	895, 899
NspI	RCATGY	1 cut(s)	897
PaeI	GCATGC	1 cut(s)	897
PaeR7I	CTCGAG	2 cut(s)	166, 2136
PagI	TCATGA	2 cut(s)	832, 2199
PaqCI	CACCTGC	2 cut(s)	113, 1463
PceI	AGGCCT	1 cut(s)	631
PciSI	GCTCTTC	2 cut(s)	149, 315
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 336, 850
PctI	GAATGC	1 cut(s)	1816
PdiI	GCCGGC	1 cut(s)	2022
PfeI	GAWTC	6 cut(s)	122, 539, 1067, 1442, 1837, 2207
PfoI	TCCNGGA	1 cut(s)	1327
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	7 cut(s)	466, 944, 1097, 1781, 2121, 2280, 2502
PpsI	GAGTC	7 cut(s)	466, 944, 1097, 1781, 2121, 2280, 2502
PsiI	TTATAA	1 cut(s)	1662
Psp124BI	GAGCTC	3 cut(s)	167, 237, 1218
Psp1406I	AACGTT	1 cut(s)	1994
Psp6I	CCWGG	3 cut(s)	251, 901, 1327
PspEI	GGTNACC	1 cut(s)	427
PspFI	CCCAGC	2 cut(s)	1082, 1415
PspGI	CCWGG	3 cut(s)	251, 901, 1327
PspN4I	GGNNCC	2 cut(s)	849, 1287
PspPI	GGNCC	5 cut(s)	210, 223, 301, 1157, 1546
PspXI	VCTCGAGB	2 cut(s)	166, 2136
PstI	CTGCAG	2 cut(s)	1639, 2040
PstNI	CAGNNNCTG	2 cut(s)	814, 1367
PsuI	RGATCY	2 cut(s)	204, 880
PvuI	CGATCG	1 cut(s)	131
PvuII	CAGCTG	2 cut(s)	1367, 1826
RsaI	GTAC	5 cut(s)	140, 218, 1062, 1485, 2225
RsaNI	GTAC	5 cut(s)	139, 217, 1061, 1484, 2224
RseI	CAYNNNNRTG	4 cut(s)	721, 1269, 1880, 2509
SacI	GAGCTC	3 cut(s)	167, 237, 1218
SapI	GCTCTTC	2 cut(s)	149, 315
SaqAI	TTAA	9 cut(s)	513, 563, 942, 1026, 1221, 2153, 2300, 2310, 2423
Sau3AI	GATC	8 cut(s)	128, 204, 727, 767, 829, 880, 1273, 1324
Sau96I	GGNCC	5 cut(s)	210, 223, 301, 1157, 1546
SchI	GAGTC	7 cut(s)	466, 945, 1097, 1782, 2122, 2281, 2503
ScrFI	CCNGG	7 cut(s)	90, 91, 253, 300, 536, 903, 1329
SduI	GDGCHC	9 cut(s)	161, 167, 198, 237, 459, 1218, 1422, 1785, 2308
SfaNI	GCATC	6 cut(s)	880, 906, 1549, 1865, 1924, 2167
SfcI	CTRYAG	4 cut(s)	1089, 1425, 1635, 2036
Sfr274I	CTCGAG	2 cut(s)	166, 2136
SinI	GGWCC	1 cut(s)	1157
SlaI	CTCGAG	2 cut(s)	166, 2136
SmaI	CCCGGG	1 cut(s)	91
SmiMI	CAYNNNNRTG	4 cut(s)	721, 1269, 1880, 2509
SmlI	CTYRAG	3 cut(s)	166, 2136, 2444
SmoI	CTYRAG	3 cut(s)	166, 2136, 2444
SphI	GCATGC	1 cut(s)	897
Sse9I	AATT	8 cut(s)	368, 946, 993, 1023, 1127, 2042, 2163, 2349
SseBI	AGGCCT	1 cut(s)	631
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	5 cut(s)	1010, 1071, 1334, 2142, 2490
SstI	GAGCTC	3 cut(s)	167, 237, 1218
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	7 cut(s)	88, 89, 251, 298, 534, 901, 1327
StyI	CCWWGG	3 cut(s)	1115, 1560, 2006
TaiI	ACGT	1 cut(s)	1997
TasI	AATT	8 cut(s)	368, 946, 993, 1023, 1127, 2042, 2163, 2349
TatI	WGTACW	2 cut(s)	1060, 2223
TauI	GCSGC	3 cut(s)	149, 215, 298
TfiI	GAWTC	6 cut(s)	122, 539, 1067, 1442, 1837, 2207
Tru1I	TTAA	9 cut(s)	513, 563, 942, 1026, 1221, 2153, 2300, 2310, 2423
Tru9I	TTAA	9 cut(s)	513, 563, 942, 1026, 1221, 2153, 2300, 2310, 2423
TscAI	CASTG	6 cut(s)	459, 628, 928, 1429, 1577, 2434
TseFI	GTSAC	3 cut(s)	913, 919, 1791
Tsp45I	GTSAC	3 cut(s)	913, 919, 1791
TspGWI	ACGGA	1 cut(s)	2198
TspMI	CCCGGG	1 cut(s)	89
TspRI	CASTG	6 cut(s)	459, 628, 928, 1429, 1577, 2434
VneI	GTGCAC	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	1157
XagI	CCTNNNNNAGG	2 cut(s)	1293, 1332
XapI	RAATTY	4 cut(s)	368, 993, 1127, 2042
XbaI	TCTAGA	1 cut(s)	1009
XceI	RCATGY	1 cut(s)	897
XhoI	CTCGAG	2 cut(s)	166, 2136
XmaI	CCCGGG	1 cut(s)	89
XspI	CTAG	5 cut(s)	1010, 1071, 1334, 2142, 2490
Zsp2I	ATGCAT	2 cut(s)	895, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.