Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013292

Physical Location & Seq

Genomic Coordinates Reverse (-)

13539449 .. 13544522

Gene Structure 5074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGTACGGCGCGGCGGAAGAGCACGAGCTCGAGCTACGGCGCTTCATACGCGTCTGGGCTCAGCGAGATCTGGGCCGCGTACTTGGCCCAAATCGAGCTCGGCGACGACAAACCCTGGCTCAACCTCACACGCTCCCTCGTCAGCTTCCTCACTACGCCGCCGGGCCAAGCTCTTCTCTCTCAGGTCTAATTCCGAACAATATTATACAATTTTTGGTCAAGGACGAGGACGGCGTGGTTGCGGTGTGGGTTGACTTTGAGAAATTTCGGAAAGAGTGTGAAGTTGAGGAGTTTTATGGAGCGTTGGAGGAGAAGCCGAAGGTAACCCTACTGTGCATGAGTATTGCAGTGCACACGGTTCTGTTGACTCAATGGGAAAGTGATAGAATGGAGGATGATATCCGAGTTAATATTCGGTTGCATAACTACCCGGAATCGATGATTGCTTTGAAGAACTTAAAAGCTGCTTATATAGACAAGCTTGTATCTGTGCGCGGTAGTGTAGTAAAAGTTAGCACTGTGAGGCCTTTTGTGGTGCAAATGGATTTTGACTGTGTGAAGTGTAAGACGAGCATTACGCGTATGTTCCCTGATGGGAAGTTTTCCCCACCATCGAAATGTGATCTTCATGGGTGCAAGAGCAGAACTTTTATTCCAAATCGATCTACTGCTCAAACGATAGATTTTCAAAAGATAAGGATACAGGAGCTACTGAAGCCTGAGGATCATGAAGAAGGCCGGGTGCCTCGAACAGTAGAATGTGAACTTCTTGAAGATCTTGTTGATGCATGCATCCCTGGAGATGTGGTGACTGTCACTGGGATAATAAGAGTCATTAACAATTACATGGACATTGGGGGAGGAAAATCGAAAGGCAAAAGTCAGGGAATTTACTATTTGTATCTAGAAGCTGTTTCAATTAAAAACTCCAAGTCACAGTCTATGCCTGAAGGTGTACAAGATTCTAGTTCTAATGCTGGGTCTGTAGCACTTGTTGACTCATTTTCCCCAAGGGATTTGGAATTCATTGTCAAGTTCTCGGAGGAACATGGTCCAGATACCTTCCGGCAACTAATCCAATCTATCTGTCCATCCATCTATGGCCATGAGCTCGTTAAAGCGGGGATAATACTGGCACTCTTTGGAGGTGTAAGGAAGCATTCAAATGATCAAAACAAGGTTCCTGTTAGAGGAGACATTCATGTCATTATTGTTGGTGATCCTGGACTAGGAAAGAGCCAAATACTTCAAGCAGCAGCAGCTGTTTCTCCGCGAGGCATTTATGTATGTGGTAATGCCACAACCAGAGCTGGGCTCACTGTAGCTGTTGTAAAGGATTCTATGACAAGTGATTATGCGTTTGAAGCAGGTGCCATGGTACTTGCAGATAGTGGTTTGTGCTGCATTGACGAGTTCGACAAAATGACTTCAGAGCATCAGGCCCTACTGGAAGCCATGGAACAACAGTGTGTGTCTATTGCAAAGGCTGGATTAGTGGCAAGTCTGTCAGCACGAACTTCTGTCCTAGCAGCAGCAAACCCTGTTGGTGGTCATTATAACCGTGCCAAAACTGTGAATGAAAATCTGAAAATAAGTGCTGCTCTCCTCTCACGATTTGATTTGGTTTTCATATTACTTGACAAACCCGATGAACTCTTGGATAAACGAGTCTCAGAGCACATTATGTCACTTCATACTGGATATGGAGAGCATTCGCCAGCTGCAAAAAAGATTCGTAGAGAAAATGCAGCATCACAAAGTGCAGAAGGCATAGATATGAGCGGAGGTCGTTCTTTGATTTCAAGGTTGAGGCTTGACCCAAAGAAGGATGCTGATTTTGTTCCATTACCCATGCAACTTCTTCGCAAGTATATTGCTTATGCAAAAACGTTTGTCTGTCCAAGGATGTCAAAGCCGGCAGCAGAAATCCTGCAGAAATTTTACTTGAAACTGAGAGACCATGCTACATCTGCTGATAGCACACCAATAACAGCAAGGCAACTGGAGAGTCTGGTGAGGCTGACAGAAGCTCGAGCTAGGTTAGATTTAAGGGAGGAAATTACAGCCCAAGATGCAACGGAAGTGGTTGAAATCATGAGAGAATCCTTGTATGACAAGTACATCGATGAGCATGGTGTTGTGGATTTTGGTCGGAGTGGAGGGATGAGTCAACAAAAAGAAGCAAAGCGGTTTTTAAGTGCCCTTAATAAGCAATCAGAGTTGCACCAGAAAGACACTTTCTCAATTTCTGAAATATACAGTTTGGCAGATAGGATTGGCCTAAGAGTTCCAGACATTGACACATTCGTTGATAACTTAAACAGTGTTGGCTATCTACTCAAGAAGGGGGGGAAGACATACCAGCTACTATCATCATCTTATTCTAGGAGTCAATCATCATCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034641 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097362 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM MCM_OB

Protein Analysis

802

Amino Acids

89.01

Weight (kDa)

7.84

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	150 - 279	6.6e-29	MCM OB domain
MCM	PF00493	351 - 565	2.4e-90	MCM P-loop domain
AAA_5	PF07728	401 - 539	2e-07	AAA domain (dynein-related subfamily)
MCM_lid	PF17855	620 - 703	7.3e-26	MCM AAA-lid domain
WHD_MCM8	PF25051	715 - 790	3.6e-30	MCM8 winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09660 AT3G09660 AT3G09660
fragaria_vesca	FvH4_6g15280 FvH4_6g15280
malus_domestica	MD04G1104500.v1.1
prunus_persica	Prupe.6G241500_v2.0.a1 Prupe.6G241500_v2.0.a1
pyrus_communis	pycom04g09950
rosa_chinensis	RchiOBHm_Chr3g0468711
rosa_laevigata	RLG00000024414
rosa_multiflora	Rmu_sc0011538.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412640
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145200 Rh3BG167800 Rh3DG166500
rosa_wichuraiana	Rw3G013700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1557
AarI	CACCTGC	1 cut(s)	1358
AasI	GACNNNNNNGTC	1 cut(s)	1202
Acc36I	ACCTGC	1 cut(s)	1358
AccB1I	GGYRCC	2 cut(s)	742, 1370
AccBSI	CCGCTC	1 cut(s)	1782
AccII	CGCG	6 cut(s)	11, 51, 78, 495, 580, 1273
AclI	AACGTT	1 cut(s)	1889
AclWI	GGATC	2 cut(s)	732, 1214
AcoI	YGGCCR	1 cut(s)	1102
AcsI	RAATTY	4 cut(s)	263, 888, 1022, 1937
AcuI	CTGAAG	3 cut(s)	734, 969, 1413
AdeI	CACNNNGTG	1 cut(s)	1760
AfaI	GTAC	5 cut(s)	5, 81, 957, 1380, 2120
AfiI	CCNNNNNNNGG	5 cut(s)	1190, 1229, 1311, 1547, 1825
AflIII	ACRYGT	2 cut(s)	49, 578
AjnI	CCWGG	3 cut(s)	114, 796, 1222
AloI	GAACNNNNNNTCC	2 cut(s)	637, 669
Alw21I	GWGCWC	6 cut(s)	24, 30, 100, 354, 1113, 1680
Alw26I	GTCTC	3 cut(s)	1188, 1675, 1950
Alw44I	GTGCAC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	732, 1214
AlwNI	CAGNNNCTG	1 cut(s)	1262
Ama87I	CYCGRG	2 cut(s)	29, 2031
AoxI	GGCC	8 cut(s)	73, 85, 164, 524, 736, 1102, 1440, 2278
ApaLI	GTGCAC	1 cut(s)	350
ApoI	RAATTY	4 cut(s)	263, 888, 1022, 1937
AspLEI	GCGC	3 cut(s)	11, 42, 495
AspS9I	GGNCC	5 cut(s)	73, 86, 164, 1052, 1441
AsuC2I	CCSGG	3 cut(s)	163, 431, 740
AsuHPI	GGTGA	3 cut(s)	820, 1229, 2026
AvaI	CYCGRG	2 cut(s)	29, 2031
AvaII	GGWCC	1 cut(s)	1052
AxyI	CCTNAGG	1 cut(s)	720
BaeGI	GKGCMC	2 cut(s)	354, 2203
BalI	TGGCCA	1 cut(s)	1104
BanI	GGYRCC	2 cut(s)	742, 1370
BanII	GRGCYC	5 cut(s)	30, 61, 100, 1113, 1317
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	2360
Bbv12I	GWGCWC	6 cut(s)	24, 30, 100, 354, 1113, 1680
BccI	CCATC	4 cut(s)	587, 619, 1099, 1103
BceAI	ACGGC	3 cut(s)	22, 53, 247
BcgI	CGANNNNNNTGC	2 cut(s)	1844, 1878
BciT130I	CCWGG	3 cut(s)	116, 798, 1224
BciVI	GTATCC	1 cut(s)	693
BclI	TGATCA	1 cut(s)	1168
BcnI	CCSGG	3 cut(s)	163, 431, 740
BcoDI	GTCTC	3 cut(s)	1188, 1675, 1950
BfaI	CTAG	6 cut(s)	905, 966, 1229, 1526, 2037, 2385
BfmI	CTRYAG	3 cut(s)	984, 1320, 1931
BfoI	RGCGCY	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	1358
BfuI	GTATCC	1 cut(s)	693
BglII	AGATCT	2 cut(s)	67, 775
BlpI	GCTNAGC	1 cut(s)	60
Bme1390I	CCNGG	6 cut(s)	116, 163, 431, 740, 798, 1224
Bme18I	GGWCC	1 cut(s)	1052
BmeT110I	CYCGRG	2 cut(s)	29, 2031
BmgT120I	GGNCC	5 cut(s)	73, 86, 164, 1052, 1441
BmiI	GGNNCC	3 cut(s)	744, 1182, 1372
BmrFI	CCNGG	6 cut(s)	116, 163, 431, 740, 798, 1224
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	6 cut(s)	775, 801, 1444, 1760, 1819, 2062
BmuI	ACTGGG	1 cut(s)	828
BpiI	GAAGAC	1 cut(s)	2360
BplI	GAGNNNNNCTC	2 cut(s)	1299, 1331
BpmI	CTGGAG	2 cut(s)	819, 2024
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	2324
BpuMI	CCSGG	3 cut(s)	163, 431, 740
Bsa29I	ATCGAT	3 cut(s)	437, 661, 2124
BsaI	GGTCTC	1 cut(s)	1950
BsaJI	CCNNGG	6 cut(s)	114, 796, 1010, 1374, 1455, 1901
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	5 cut(s)	1190, 1229, 1311, 1547, 1825
Bse118I	RCCGGY	1 cut(s)	1915
Bse1I	ACTGG	5 cut(s)	823, 1137, 1452, 1702, 2007
Bse21I	CCTNAGG	1 cut(s)	720
BseBI	CCWGG	3 cut(s)	116, 798, 1224
BseCI	ATCGAT	3 cut(s)	437, 661, 2124
BseDI	CCNNGG	6 cut(s)	114, 796, 1010, 1374, 1455, 1901
BseGI	GGATG	6 cut(s)	400, 792, 1091, 1834, 1911, 2169
BseLI	CCNNNNNNNGG	5 cut(s)	1190, 1229, 1311, 1547, 1825
BseMII	CTCAG	5 cut(s)	74, 195, 711, 1686, 1943
BseNI	ACTGG	5 cut(s)	823, 1137, 1452, 1702, 2007
BseRI	GAGGAG	4 cut(s)	302, 323, 1206, 1595
BseSI	GKGCMC	2 cut(s)	354, 2203
BseYI	CCCAGC	2 cut(s)	977, 1310
BsgI	GTGCAG	1 cut(s)	1782
Bsh1236I	CGCG	6 cut(s)	11, 51, 78, 495, 580, 1273
BshFI	GGCC	8 cut(s)	75, 87, 166, 526, 738, 1104, 1442, 2280
BshNI	GGYRCC	2 cut(s)	742, 1370
BshVI	ATCGAT	3 cut(s)	437, 661, 2124
BsiHKAI	GWGCWC	6 cut(s)	24, 30, 100, 354, 1113, 1680
BsiHKCI	CYCGRG	2 cut(s)	29, 2031
BsiSI	CCGG	5 cut(s)	162, 431, 739, 1066, 1916
BslI	CCNNNNNNNGG	5 cut(s)	1190, 1229, 1311, 1547, 1825
BsmAI	GTCTC	3 cut(s)	1188, 1675, 1950
BsmI	GAATGC	2 cut(s)	1159, 1711
BsnI	GGCC	8 cut(s)	75, 87, 166, 526, 738, 1104, 1442, 2280
Bso31I	GGTCTC	1 cut(s)	1950
BsoBI	CYCGRG	2 cut(s)	29, 2031
Bsp1286I	GDGCHC	9 cut(s)	24, 30, 61, 100, 354, 1113, 1317, 1680, 2203
Bsp1407I	TGTACA	1 cut(s)	955
Bsp143I	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
Bsp1720I	GCTNAGC	1 cut(s)	60
Bsp19I	CCATGG	2 cut(s)	1374, 1455
BspANI	GGCC	8 cut(s)	75, 87, 166, 526, 738, 1104, 1442, 2280
BspCNI	CTCAG	5 cut(s)	73, 194, 712, 1685, 1944
BspDI	ATCGAT	3 cut(s)	437, 661, 2124
BspFNI	CGCG	6 cut(s)	11, 51, 78, 495, 580, 1273
BspHI	TCATGA	2 cut(s)	727, 2094
BspLI	GGNNCC	3 cut(s)	744, 1182, 1372
BspMAI	CTGCAG	1 cut(s)	1935
BspMI	ACCTGC	1 cut(s)	1358
BspPI	GGATC	2 cut(s)	732, 1214
BspQI	GCTCTTC	2 cut(s)	12, 178
BspT107I	GGYRCC	2 cut(s)	742, 1370
BspTNI	GGTCTC	1 cut(s)	1950
BsrBI	CCGCTC	1 cut(s)	1782
BsrFI	RCCGGY	1 cut(s)	1915
BsrGI	TGTACA	1 cut(s)	955
BsrI	ACTGG	5 cut(s)	823, 1137, 1452, 1702, 2007
BssAI	RCCGGY	1 cut(s)	1915
BssECI	CCNNGG	6 cut(s)	114, 796, 1010, 1374, 1455, 1901
BssMI	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	4 cut(s)	1010, 1374, 1455, 1901
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	3 cut(s)	116, 798, 1224
Bst6I	CTCTTC	2 cut(s)	12, 178
BstAUI	TGTACA	1 cut(s)	955
BstC8I	GCNNGC	3 cut(s)	790, 1719, 1917
BstDEI	CTNAG	6 cut(s)	60, 181, 720, 1672, 1952, 2282
BstDSI	CCRYGG	2 cut(s)	1374, 1455
BstEII	GGTNACC	1 cut(s)	322
BstENI	CCTNNNNNAGG	2 cut(s)	1188, 1227
BstF5I	GGATG	6 cut(s)	400, 792, 1091, 1834, 1911, 2169
BstFNI	CGCG	6 cut(s)	11, 51, 78, 495, 580, 1273
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	3 cut(s)	11, 42, 495
BstKTI	GATC	7 cut(s)	70, 625, 665, 727, 778, 1171, 1222
BstMAI	GTCTC	3 cut(s)	1188, 1675, 1950
BstMBI	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 84, 715, 1259, 1364, 1970, 2072
BstNI	CCWGG	3 cut(s)	116, 798, 1224
BstNSI	RCATGY	1 cut(s)	792
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	6 cut(s)	114, 161, 429, 738, 796, 1222
BstSFI	CTRYAG	3 cut(s)	984, 1320, 1931
BstSLI	GKGCMC	2 cut(s)	354, 2203
BstUI	CGCG	6 cut(s)	11, 51, 78, 495, 580, 1273
BstV2I	GAAGAC	1 cut(s)	2360
BstX2I	RGATCY	2 cut(s)	67, 775
BstYI	RGATCY	2 cut(s)	67, 775
Bsu15I	ATCGAT	3 cut(s)	437, 661, 2124
Bsu36I	CCTNAGG	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	8 cut(s)	75, 87, 166, 526, 738, 1104, 1442, 2280
BsuTUI	ATCGAT	3 cut(s)	437, 661, 2124
BtgI	CCRYGG	2 cut(s)	1374, 1455
BtsCI	GGATG	6 cut(s)	400, 792, 1091, 1834, 1911, 2169
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	6 cut(s)	354, 516, 816, 1317, 1472, 2329
BveI	ACCTGC	1 cut(s)	1358
Cac8I	GCNNGC	3 cut(s)	790, 1719, 1917
CaiI	CAGNNNCTG	1 cut(s)	1262
CciI	TCATGA	2 cut(s)	727, 2094
CfoI	GCGC	3 cut(s)	11, 42, 495
Cfr10I	RCCGGY	1 cut(s)	1915
Cfr13I	GGNCC	5 cut(s)	73, 86, 164, 1052, 1441
ClaI	ATCGAT	3 cut(s)	437, 661, 2124
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	5 cut(s)	4, 80, 956, 1379, 2119
CspCI	CAANNNNNGTGG	2 cut(s)	2064, 2099
CviQI	GTAC	5 cut(s)	4, 80, 956, 1379, 2119
DdeI	CTNAG	6 cut(s)	60, 181, 720, 1672, 1952, 2282
DpnI	GATC	7 cut(s)	69, 624, 664, 726, 777, 1170, 1221
DpnII	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
DraIII	CACNNNGTG	1 cut(s)	1760
DrdI	GACNNNNNNGTC	1 cut(s)	1202
DseDI	GACNNNNNNGTC	1 cut(s)	1202
EaeI	YGGCCR	1 cut(s)	1102
Eam1104I	CTCTTC	2 cut(s)	12, 178
EarI	CTCTTC	2 cut(s)	12, 178
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	3 cut(s)	28, 98, 1111
Eco130I	CCWWGG	4 cut(s)	1010, 1374, 1455, 1901
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	5 cut(s)	30, 61, 100, 1113, 1317
Eco31I	GGTCTC	1 cut(s)	1950
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	1052
Eco53kI	GAGCTC	3 cut(s)	28, 98, 1111
Eco57I	CTGAAG	3 cut(s)	734, 969, 1413
Eco81I	CCTNAGG	1 cut(s)	720
Eco88I	CYCGRG	2 cut(s)	29, 2031
Eco91I	GGTNACC	1 cut(s)	322
EcoICRI	GAGCTC	3 cut(s)	28, 98, 1111
EcoNI	CCTNNNNNAGG	2 cut(s)	1188, 1227
EcoO109I	RGGNCCY	1 cut(s)	1441
EcoO65I	GGTNACC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	3 cut(s)	114, 796, 1222
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	4 cut(s)	1010, 1374, 1455, 1901
EcoT22I	ATGCAT	2 cut(s)	790, 794
EcoT38I	GRGCYC	5 cut(s)	30, 61, 100, 1113, 1317
ErhI	CCWWGG	4 cut(s)	1010, 1374, 1455, 1901
FauI	CCCGC	1 cut(s)	1114
FbaI	TGATCA	1 cut(s)	1168
FokI	GGATG	6 cut(s)	407, 779, 1078, 1841, 1918, 2176
FriOI	GRGCYC	5 cut(s)	30, 61, 100, 1113, 1317
FspBI	CTAG	6 cut(s)	905, 966, 1229, 1526, 2037, 2385
GlaI	GCGC	3 cut(s)	10, 41, 494
GsaI	CCCAGC	2 cut(s)	981, 1314
GsuI	CTGGAG	2 cut(s)	819, 2024
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	8 cut(s)	75, 87, 166, 526, 738, 1104, 1442, 2280
HapII	CCGG	5 cut(s)	162, 431, 739, 1066, 1916
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	11, 42, 495
Hin6I	GCGC	3 cut(s)	9, 40, 493
HinP1I	GCGC	3 cut(s)	9, 40, 493
HincII	GTYRAC	4 cut(s)	253, 366, 997, 2171
HindII	GTYRAC	4 cut(s)	253, 366, 997, 2171
HindIII	AAGCTT	1 cut(s)	479
HpaII	CCGG	5 cut(s)	162, 431, 739, 1066, 1916
HphI	GGTGA	3 cut(s)	820, 1229, 2026
Hpy166II	GTNNAC	7 cut(s)	253, 352, 366, 764, 956, 997, 2171
Hpy188III	TCNNGA	8 cut(s)	728, 770, 905, 1055, 1611, 2095, 2291, 2341
Hpy8I	GTNNAC	7 cut(s)	253, 352, 366, 764, 956, 997, 2171
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	7 cut(s)	313, 728, 944, 1072, 1760, 1819, 2338
HpyCH4IV	ACGT	1 cut(s)	1889
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 84, 715, 1259, 1364, 1970, 2072
HpyF3I	CTNAG	6 cut(s)	60, 181, 720, 1672, 1952, 2282
HpySE526I	ACGT	1 cut(s)	1889
HspAI	GCGC	3 cut(s)	9, 40, 493
KroI	GCCGGC	1 cut(s)	1915
KroNI	GCCGGC	1 cut(s)	1917
Ksp22I	TGATCA	1 cut(s)	1168
Kzo9I	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
LguI	GCTCTTC	2 cut(s)	12, 178
LmnI	GCTCC	3 cut(s)	138, 299, 706
LweI	GCATC	6 cut(s)	775, 801, 1444, 1760, 1819, 2062
MaeI	CTAG	6 cut(s)	905, 966, 1229, 1526, 2037, 2385
MaeII	ACGT	1 cut(s)	1889
MaeIII	GTNAC	5 cut(s)	322, 808, 814, 933, 1686
MalI	GATC	7 cut(s)	69, 624, 664, 726, 777, 1170, 1221
MbiI	CCGCTC	1 cut(s)	1782
MboI	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
MboII	GAAGA	8 cut(s)	29, 165, 463, 617, 743, 785, 1853, 2365
MflI	RGATCY	2 cut(s)	67, 775
MhlI	GDGCHC	9 cut(s)	24, 30, 61, 100, 354, 1113, 1317, 1680, 2203
MlsI	TGGCCA	1 cut(s)	1104
MluI	ACGCGT	2 cut(s)	49, 578
MluNI	TGGCCA	1 cut(s)	1104
MlyI	GAGTC	7 cut(s)	361, 840, 992, 1677, 2017, 2176, 2398
MmeI	TCCRAC	2 cut(s)	285, 2132
Mox20I	TGGCCA	1 cut(s)	1104
Mph1103I	ATGCAT	2 cut(s)	790, 794
MroNI	GCCGGC	1 cut(s)	1915
MscI	TGGCCA	1 cut(s)	1104
MseI	TTAA	9 cut(s)	408, 458, 837, 921, 1116, 2048, 2195, 2205, 2318
MslI	CAYNNNNRTG	4 cut(s)	616, 1164, 1775, 2404
Msp20I	TGGCCA	1 cut(s)	1104
MspA1I	CMGCKG	2 cut(s)	1262, 1721
MspI	CCGG	5 cut(s)	162, 431, 739, 1066, 1916
MspR9I	CCNGG	6 cut(s)	116, 163, 431, 740, 798, 1224
Mva1269I	GAATGC	2 cut(s)	1159, 1711
MvaI	CCWGG	3 cut(s)	116, 798, 1224
MvnI	CGCG	6 cut(s)	11, 51, 78, 495, 580, 1273
MwoI	GCNNNNNNNGC	7 cut(s)	48, 84, 715, 1259, 1364, 1970, 2072
NaeI	GCCGGC	1 cut(s)	1917
NciI	CCSGG	3 cut(s)	163, 431, 740
NcoI	CCATGG	2 cut(s)	1374, 1455
NdeII	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
NgoMIV	GCCGGC	1 cut(s)	1915
NlaIV	GGNNCC	3 cut(s)	744, 1182, 1372
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	4 cut(s)	808, 814, 933, 1686
NsiI	ATGCAT	2 cut(s)	790, 794
NspI	RCATGY	1 cut(s)	792
PaeI	GCATGC	1 cut(s)	792
PaeR7I	CTCGAG	2 cut(s)	29, 2031
PagI	TCATGA	2 cut(s)	727, 2094
PaqCI	CACCTGC	1 cut(s)	1358
PceI	AGGCCT	1 cut(s)	526
PciSI	GCTCTTC	2 cut(s)	12, 178
PcsI	WCGNNNNNNNCGW	2 cut(s)	100, 231
PctI	GAATGC	2 cut(s)	1159, 1711
PdiI	GCCGGC	1 cut(s)	1917
PfeI	GAWTC	5 cut(s)	434, 962, 1337, 1732, 2102
PfoI	TCCNGGA	1 cut(s)	1222
PleI	GAGTC	7 cut(s)	361, 839, 992, 1676, 2016, 2175, 2397
PpsI	GAGTC	7 cut(s)	361, 839, 992, 1676, 2016, 2175, 2397
PsiI	TTATAA	1 cut(s)	1557
Psp124BI	GAGCTC	3 cut(s)	30, 100, 1113
Psp1406I	AACGTT	1 cut(s)	1889
Psp6I	CCWGG	3 cut(s)	114, 796, 1222
PspEI	GGTNACC	1 cut(s)	322
PspFI	CCCAGC	2 cut(s)	977, 1310
PspGI	CCWGG	3 cut(s)	114, 796, 1222
PspN4I	GGNNCC	3 cut(s)	744, 1182, 1372
PspPI	GGNCC	5 cut(s)	73, 86, 164, 1052, 1441
PspXI	VCTCGAGB	2 cut(s)	29, 2031
PstI	CTGCAG	1 cut(s)	1935
PstNI	CAGNNNCTG	1 cut(s)	1262
PsuI	RGATCY	2 cut(s)	67, 775
PvuII	CAGCTG	2 cut(s)	1262, 1721
RsaI	GTAC	5 cut(s)	5, 81, 957, 1380, 2120
RsaNI	GTAC	5 cut(s)	4, 80, 956, 1379, 2119
RseI	CAYNNNNRTG	4 cut(s)	616, 1164, 1775, 2404
SacI	GAGCTC	3 cut(s)	30, 100, 1113
SapI	GCTCTTC	2 cut(s)	12, 178
SaqAI	TTAA	9 cut(s)	408, 458, 837, 921, 1116, 2048, 2195, 2205, 2318
Sau3AI	GATC	7 cut(s)	67, 622, 662, 724, 775, 1168, 1219
Sau96I	GGNCC	5 cut(s)	73, 86, 164, 1052, 1441
SchI	GAGTC	7 cut(s)	361, 840, 992, 1677, 2017, 2176, 2398
ScrFI	CCNGG	6 cut(s)	116, 163, 431, 740, 798, 1224
SduI	GDGCHC	9 cut(s)	24, 30, 61, 100, 354, 1113, 1317, 1680, 2203
SfaNI	GCATC	6 cut(s)	775, 801, 1444, 1760, 1819, 2062
SfcI	CTRYAG	3 cut(s)	984, 1320, 1931
Sfr274I	CTCGAG	2 cut(s)	29, 2031
SinI	GGWCC	1 cut(s)	1052
SlaI	CTCGAG	2 cut(s)	29, 2031
SmiMI	CAYNNNNRTG	4 cut(s)	616, 1164, 1775, 2404
SmlI	CTYRAG	3 cut(s)	29, 2031, 2339
SmoI	CTYRAG	3 cut(s)	29, 2031, 2339
SphI	GCATGC	1 cut(s)	792
SseBI	AGGCCT	1 cut(s)	526
SspI	AATATT	2 cut(s)	202, 412
SspMI	CTAG	6 cut(s)	905, 966, 1229, 1526, 2037, 2385
SstI	GAGCTC	3 cut(s)	30, 100, 1113
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	6 cut(s)	114, 161, 429, 738, 796, 1222
StyI	CCWWGG	4 cut(s)	1010, 1374, 1455, 1901
TaiI	ACGT	1 cut(s)	1892
TatI	WGTACW	2 cut(s)	955, 2118
TauI	GCSGC	3 cut(s)	14, 78, 161
TfiI	GAWTC	5 cut(s)	434, 962, 1337, 1732, 2102
Tru1I	TTAA	9 cut(s)	408, 458, 837, 921, 1116, 2048, 2195, 2205, 2318
Tru9I	TTAA	9 cut(s)	408, 458, 837, 921, 1116, 2048, 2195, 2205, 2318
TscAI	CASTG	6 cut(s)	354, 523, 823, 1324, 1472, 2329
TseFI	GTSAC	4 cut(s)	808, 814, 933, 1686
Tsp45I	GTSAC	4 cut(s)	808, 814, 933, 1686
TspDTI	ATGAA	9 cut(s)	34, 617, 744, 1015, 1190, 1593, 1618, 1665, 1682
TspGWI	ACGGA	1 cut(s)	2093
TspRI	CASTG	6 cut(s)	354, 523, 823, 1324, 1472, 2329
VneI	GTGCAC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	1052
XagI	CCTNNNNNAGG	2 cut(s)	1188, 1227
XapI	RAATTY	4 cut(s)	263, 888, 1022, 1937
XbaI	TCTAGA	1 cut(s)	904
XceI	RCATGY	1 cut(s)	792
XhoI	CTCGAG	2 cut(s)	29, 2031
XspI	CTAG	6 cut(s)	905, 966, 1229, 1526, 2037, 2385
Zsp2I	ATGCAT	2 cut(s)	790, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.