Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013292

Physical Location & Seq

Genomic Coordinates Reverse (-)

12872112 .. 12880678

Gene Structure 8567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGTGTAAAGGGGGAGCGATGACAAACGACATGTCTTTGAAAGAGAGAGAGATAGGAGAGAAACTTTTGAACGCACCACCGTTTTTGGCATACATCATTCATTTTCTCCCGCCAAAACCCGGGGACGAACACACCTGCGCTTCAGAAGCGGAATCTCGATCGGAGATGTACGGCGCGGCGGGGAAGAGCACGAGCTCGAGCTACGGCGCTTCATACGCGTCTGGGCTCAGCGAGATCTGGGCCGCGTACTTGGCCCAAATCGAGCTCGGCGACGACAAACCCTGGCTCAACCTCACACGCTCCCTCGTCAGCTTCCTCACTACGCCGCCGGGCCAAGCTCTTCTCTCTCAGGTCAAGGACGAGGACGGCGTGGTTGCGGTGTGGGTTGACTTTGAGAAATTTCGGAAAGAGTGTGAAGTTGAGGAGTTTTATGAAGCGTTGGAGGAGAAGCCGAAGGTAACCCTACTGTGCATGAGTATTGCAGTGCACAAGGTTCTGTTGACTCAATGGGAAAGTGATAGAATGGAGGATGATATCCGAGTTAATATTCGGTTGCATAACTACCCGGAATCGATGATTGCTTTGAAGAACTTAAAAGCTGCTTATATAGACAAGCTTGTATCTGTGCGCGGTAGTGTAGTAAAAGTTAGCACTGTGAGGCCTTTTGTGGTGCAAATGGATTTTGACTGTGTGAAGTGTAAGACGAGCATTACGCGTATGTTCCCTGATGGGAAGTTTTCCCCACCATCGAAATGTGATCTTCATGGGTGCAAGAGCAGAACTTTTATTCCAAATCGATCTACTGCTCAAACGATAGATTTTCAAAAGATAAGGATACAGGAGCTGCTGAAGCCTGAGGATCATGAAGAAGGACGGGTGCCTCGAACAGTAGAATGTGAACTTCTTGAAGATCTTGTTGATGCATGCATCCCTGGAGATGTGGTGACTGTCACTGGGATAATAAGAGTCATTAACAATTACATGGACATTGGGGGAGGAAAATCGAAAGGCAAAAGTCAGGGAATTTACTATTTGTATCTAGAAGCTGTTTCAATTAAAAACTCCAAGTCGCAGTCTATGCCTGAAGGTGTACAAGATTCTAGTTCTAATGCTGGGTCTGTAGCACTTGTTGACTCATTTTCCCCAAGGGATTTGGAATTCATTGTCAAGTTCTCGGAGGAACATGGTCCAGATACCTTCCGGCAACTAATCCAATCTATCTGTCCATCCATCTATGGCCATGAGCTCGTTAAAGCGGGGATAATACTGGCACTCTTTGGAGGTGTAAGGAAGCACTCAAATGATCAAAACAAGGTTCCTGTTAGAGGAGACATTCATGTCATTATTGTTGGTGATCCTGGACTAGGAAAGAGCCAAATACTTCAAGCAGCAGCAGCTGTTTCTCCGCGAGGCATTTATGTATGTGGTAATGCCACAACCAGAGCTGGGCTCACTGTAGCTGTTGTAAAGGATTCTATGACAAGTGATTATGCGTTTGAAGCAGGTGCTATGGTACTTGCAGATAGTGGTTTGTGCTGCATTGATGAGTTCGACAAAATGACTTCAGAGCATCAGGCCCTACTGGAAGCCATGGAACAACAGTGTGTGTCTATTGCGAAGGCTGGATTAGTGGCAAGTCTGTCAGCACGAACTTCTGTCTTAGCTGCAGCAAACCCTGTTGGTGGTCATTATAACCGTGCCAAAACTGTGAATGAAAATCTGAAAATAAGTGCTGCTCTCCTCTCACGATTTGATTTGGTTTTCATATTACTTGACAAACCTGATGAACTCTTGGATAAACGAGTCTCAGAGCACATTATGTCACTTCATACTGGATATGGAGAGCATTCGCCAGCTGCAAAAAAGATTCATAGAGAAAATGCAGCATCACAAAGTGCAGAAGGCATAGATATGAGCGGAGGTCGTTCTTTGATTTCAAGGTTGAGGCTTGACCCAAAGAAGGATGCTGATTTTGTTCCATTACCCATGCAACTTCTTCGCAAGTATATTGCTTATGCAAAAACGTTTGTCTTTCCAAGGATGTCAAAGCCGGCAGCAGAAATCCTGCAGAAATTTTACTTGAAACTGAGAGACCATGCTACATCTGCTGATAGCACACCAATAACAGCAAGGCAACTGGAGAGTCTGGTGAGGCTGACAGAAGCTCGAGCTAGGTTAGATTTAAGGGAGGAAATTACAGCCCAAGATGCAACGGTTAGTTCTCTTATCTGGCAAAAAGACATTTCAAACCCTCGTAGAACAAAAGAAGCTTTTACCATTTGTGTGAATGTTGCGTTCTTCTTCTTGCTTTATGTTTTTGGAATGGATTTTGATTATCGTCCATTAAGCCATAAGTTTGGTGATTGGTTACTCCCCAATTATTATCAACTTTTAGCCACGTTAGCTTGTAAAGACTTTCCGGATCATCCCATTTGCAGGAAGTGGTTGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034641 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097362 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM MCM_OB

Protein Analysis

818

Amino Acids

90.67

Weight (kDa)

6.47

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	195 - 324	6.8e-29	MCM OB domain
MCM	PF00493	396 - 610	2.5e-90	MCM P-loop domain
AAA_5	PF07728	446 - 584	2.1e-07	AAA domain (dynein-related subfamily)
MCM_lid	PF17855	665 - 743	1.2e-23	MCM AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09660 AT3G09660 AT3G09660
fragaria_vesca	FvH4_6g15280 FvH4_6g15280
malus_domestica	MD04G1104500.v1.1
prunus_persica	Prupe.6G241500_v2.0.a1 Prupe.6G241500_v2.0.a1
pyrus_communis	pycom04g09950
rosa_chinensis	RchiOBHm_Chr3g0468711
rosa_laevigata	RLG00000024414
rosa_multiflora	Rmu_sc0011538.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412640
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145200 Rh3BG167800 Rh3DG166500
rosa_wichuraiana	Rw3G013700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1692
AarI	CACCTGC	2 cut(s)	143, 1493
AasI	GACNNNNNNGTC	1 cut(s)	1337
Acc36I	ACCTGC	2 cut(s)	143, 1493
AccB1I	GGYRCC	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	1917
AccII	CGCG	6 cut(s)	176, 218, 245, 630, 715, 1408
AccIII	TCCGGA	1 cut(s)	2419
AclI	AACGTT	1 cut(s)	2024
AclWI	GGATC	3 cut(s)	867, 1349, 2430
AcoI	YGGCCR	1 cut(s)	1237
AcsI	RAATTY	4 cut(s)	398, 1023, 1157, 2072
AcuI	CTGAAG	4 cut(s)	126, 869, 1104, 1548
AdeI	CACNNNGTG	1 cut(s)	1895
AfaI	GTAC	4 cut(s)	170, 248, 1092, 1515
AfiI	CCNNNNNNNGG	7 cut(s)	119, 1325, 1364, 1446, 1682, 1960, 2436
AflIII	ACRYGT	3 cut(s)	30, 216, 713
AjnI	CCWGG	3 cut(s)	281, 931, 1357
AloI	GAACNNNNNNTCC	2 cut(s)	772, 804
Alw21I	GWGCWC	6 cut(s)	191, 197, 267, 489, 1248, 1815
Alw26I	GTCTC	3 cut(s)	1323, 1810, 2085
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	867, 1349, 2430
AlwNI	CAGNNNCTG	2 cut(s)	844, 1397
Ama87I	CYCGRG	3 cut(s)	119, 196, 2166
Aor13HI	TCCGGA	1 cut(s)	2419
AoxI	GGCC	6 cut(s)	240, 252, 331, 659, 1237, 1575
ApaLI	GTGCAC	1 cut(s)	485
ApoI	RAATTY	4 cut(s)	398, 1023, 1157, 2072
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspLEI	GCGC	4 cut(s)	140, 176, 209, 630
AspS9I	GGNCC	5 cut(s)	240, 253, 331, 1187, 1576
AsuC2I	CCSGG	4 cut(s)	120, 121, 330, 566
AsuHPI	GGTGA	4 cut(s)	955, 1364, 2161, 2372
AvaI	CYCGRG	3 cut(s)	119, 196, 2166
AvaII	GGWCC	1 cut(s)	1187
AxyI	CCTNAGG	1 cut(s)	855
BaeGI	GKGCMC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	1239
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	5 cut(s)	197, 228, 267, 1248, 1452
BauI	CACGAG	1 cut(s)	190
Bbv12I	GWGCWC	6 cut(s)	191, 197, 267, 489, 1248, 1815
BccI	CCATC	4 cut(s)	722, 754, 1234, 1238
BceAI	ACGGC	3 cut(s)	187, 220, 382
BcgI	CGANNNNNNTGC	2 cut(s)	1979, 2013
BciT130I	CCWGG	3 cut(s)	283, 933, 1359
BciVI	GTATCC	1 cut(s)	828
BclI	TGATCA	1 cut(s)	1303
BcnI	CCSGG	4 cut(s)	120, 121, 330, 566
BcoDI	GTCTC	3 cut(s)	1323, 1810, 2085
BfaI	CTAG	4 cut(s)	1040, 1101, 1364, 2172
BfmI	CTRYAG	4 cut(s)	1119, 1455, 1665, 2066
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	2 cut(s)	143, 1493
BfuI	GTATCC	1 cut(s)	828
BglII	AGATCT	2 cut(s)	234, 910
BlpI	GCTNAGC	1 cut(s)	227
Bme1390I	CCNGG	7 cut(s)	120, 121, 283, 330, 566, 933, 1359
Bme18I	GGWCC	1 cut(s)	1187
BmeT110I	CYCGRG	3 cut(s)	119, 196, 2166
BmgT120I	GGNCC	5 cut(s)	240, 253, 331, 1187, 1576
BmiI	GGNNCC	2 cut(s)	879, 1317
BmrFI	CCNGG	7 cut(s)	120, 121, 283, 330, 566, 933, 1359
BmrI	ACTGGG	1 cut(s)	963
BmsI	GCATC	6 cut(s)	910, 936, 1579, 1895, 1954, 2197
BmuI	ACTGGG	1 cut(s)	963
BplI	GAGNNNNNCTC	2 cut(s)	1434, 1466
BpmI	CTGGAG	2 cut(s)	954, 2159
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuMI	CCSGG	4 cut(s)	120, 121, 330, 566
Bsa29I	ATCGAT	2 cut(s)	572, 796
BsaI	GGTCTC	1 cut(s)	2085
BsaJI	CCNNGG	7 cut(s)	119, 120, 281, 931, 1145, 1590, 2036
BsaWI	WCCGGW	1 cut(s)	2419
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bsc4I	CCNNNNNNNGG	7 cut(s)	119, 1325, 1364, 1446, 1682, 1960, 2436
Bse118I	RCCGGY	1 cut(s)	2050
Bse1I	ACTGG	5 cut(s)	958, 1272, 1587, 1837, 2142
Bse21I	CCTNAGG	1 cut(s)	855
BseAI	TCCGGA	1 cut(s)	2419
BseBI	CCWGG	3 cut(s)	283, 933, 1359
BseCI	ATCGAT	2 cut(s)	572, 796
BseDI	CCNNGG	7 cut(s)	119, 120, 281, 931, 1145, 1590, 2036
BseGI	GGATG	6 cut(s)	535, 927, 1226, 1969, 2046, 2425
BseLI	CCNNNNNNNGG	7 cut(s)	119, 1325, 1364, 1446, 1682, 1960, 2436
BseMII	CTCAG	5 cut(s)	241, 362, 846, 1821, 2078
BseNI	ACTGG	5 cut(s)	958, 1272, 1587, 1837, 2142
BseRI	GAGGAG	4 cut(s)	437, 458, 1341, 1730
BseSI	GKGCMC	1 cut(s)	489
BseYI	CCCAGC	2 cut(s)	1112, 1445
BsgI	GTGCAG	1 cut(s)	1917
Bsh1236I	CGCG	6 cut(s)	176, 218, 245, 630, 715, 1408
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	6 cut(s)	242, 254, 333, 661, 1239, 1577
BshNI	GGYRCC	1 cut(s)	877
BshVI	ATCGAT	2 cut(s)	572, 796
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	6 cut(s)	191, 197, 267, 489, 1248, 1815
BsiHKCI	CYCGRG	3 cut(s)	119, 196, 2166
BsiSI	CCGG	6 cut(s)	120, 329, 566, 1201, 2051, 2420
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	7 cut(s)	119, 1325, 1364, 1446, 1682, 1960, 2436
BsmAI	GTCTC	3 cut(s)	1323, 1810, 2085
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	1846
BsnI	GGCC	6 cut(s)	242, 254, 333, 661, 1239, 1577
Bso31I	GGTCTC	1 cut(s)	2085
BsoBI	CYCGRG	3 cut(s)	119, 196, 2166
Bsp1286I	GDGCHC	8 cut(s)	191, 197, 228, 267, 489, 1248, 1452, 1815
Bsp13I	TCCGGA	1 cut(s)	2419
Bsp1407I	TGTACA	1 cut(s)	1090
Bsp143I	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
Bsp1720I	GCTNAGC	1 cut(s)	227
Bsp19I	CCATGG	1 cut(s)	1590
BspANI	GGCC	6 cut(s)	242, 254, 333, 661, 1239, 1577
BspCNI	CTCAG	5 cut(s)	240, 361, 847, 1820, 2079
BspDI	ATCGAT	2 cut(s)	572, 796
BspEI	TCCGGA	1 cut(s)	2419
BspFNI	CGCG	6 cut(s)	176, 218, 245, 630, 715, 1408
BspHI	TCATGA	2 cut(s)	862, 2453
BspLI	GGNNCC	2 cut(s)	879, 1317
BspMAI	CTGCAG	2 cut(s)	1669, 2070
BspMI	ACCTGC	2 cut(s)	143, 1493
BspPI	GGATC	3 cut(s)	867, 1349, 2430
BspQI	GCTCTTC	2 cut(s)	179, 345
BspT107I	GGYRCC	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	2085
BsrBI	CCGCTC	1 cut(s)	1917
BsrFI	RCCGGY	1 cut(s)	2050
BsrGI	TGTACA	1 cut(s)	1090
BsrI	ACTGG	5 cut(s)	958, 1272, 1587, 1837, 2142
BssAI	RCCGGY	1 cut(s)	2050
BssECI	CCNNGG	7 cut(s)	119, 120, 281, 931, 1145, 1590, 2036
BssMI	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	3 cut(s)	1145, 1590, 2036
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	3 cut(s)	283, 933, 1359
Bst6I	CTCTTC	2 cut(s)	179, 345
BstAPI	GCANNNNNTGC	1 cut(s)	1078
BstAUI	TGTACA	1 cut(s)	1090
BstC8I	GCNNGC	3 cut(s)	925, 1854, 2052
BstDEI	CTNAG	6 cut(s)	227, 348, 855, 1660, 1807, 2087
BstDSI	CCRYGG	1 cut(s)	1590
BstEII	GGTNACC	1 cut(s)	457
BstENI	CCTNNNNNAGG	2 cut(s)	1323, 1362
BstF5I	GGATG	6 cut(s)	535, 927, 1226, 1969, 2046, 2425
BstFNI	CGCG	6 cut(s)	176, 218, 245, 630, 715, 1408
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	4 cut(s)	140, 176, 209, 630
BstKTI	GATC	9 cut(s)	161, 237, 760, 800, 862, 913, 1306, 1357, 2425
BstMAI	GTCTC	3 cut(s)	1323, 1810, 2085
BstMBI	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
BstMCI	CGRYCG	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	283, 933, 1359
BstNSI	RCATGY	2 cut(s)	34, 927
BstPI	GGTNACC	1 cut(s)	457
BstSCI	CCNGG	7 cut(s)	118, 119, 281, 328, 564, 931, 1357
BstSFI	CTRYAG	4 cut(s)	1119, 1455, 1665, 2066
BstSLI	GKGCMC	1 cut(s)	489
BstUI	CGCG	6 cut(s)	176, 218, 245, 630, 715, 1408
BstX2I	RGATCY	2 cut(s)	234, 910
BstXI	CCANNNNNNTGG	1 cut(s)	2357
BstYI	RGATCY	2 cut(s)	234, 910
Bsu15I	ATCGAT	2 cut(s)	572, 796
Bsu36I	CCTNAGG	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	828
BsuRI	GGCC	6 cut(s)	242, 254, 333, 661, 1239, 1577
BsuTUI	ATCGAT	2 cut(s)	572, 796
BtgI	CCRYGG	1 cut(s)	1590
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	6 cut(s)	535, 927, 1226, 1969, 2046, 2425
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	5 cut(s)	489, 651, 951, 1452, 1607
BveI	ACCTGC	2 cut(s)	143, 1493
Cac8I	GCNNGC	3 cut(s)	925, 1854, 2052
CaiI	CAGNNNCTG	2 cut(s)	844, 1397
CciI	TCATGA	2 cut(s)	862, 2453
CfoI	GCGC	4 cut(s)	140, 176, 209, 630
Cfr10I	RCCGGY	1 cut(s)	2050
Cfr13I	GGNCC	5 cut(s)	240, 253, 331, 1187, 1576
Cfr9I	CCCGGG	1 cut(s)	119
ClaI	ATCGAT	2 cut(s)	572, 796
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	4 cut(s)	169, 247, 1091, 1514
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviQI	GTAC	4 cut(s)	169, 247, 1091, 1514
DdeI	CTNAG	6 cut(s)	227, 348, 855, 1660, 1807, 2087
DpnI	GATC	9 cut(s)	160, 236, 759, 799, 861, 912, 1305, 1356, 2424
DpnII	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
DraIII	CACNNNGTG	1 cut(s)	1895
DrdI	GACNNNNNNGTC	1 cut(s)	1337
DseDI	GACNNNNNNGTC	1 cut(s)	1337
EaeI	YGGCCR	1 cut(s)	1237
Eam1104I	CTCTTC	2 cut(s)	179, 345
EarI	CTCTTC	2 cut(s)	179, 345
Ecl136II	GAGCTC	3 cut(s)	195, 265, 1246
Eco130I	CCWWGG	3 cut(s)	1145, 1590, 2036
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	5 cut(s)	197, 228, 267, 1248, 1452
Eco31I	GGTCTC	1 cut(s)	2085
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	1187
Eco53kI	GAGCTC	3 cut(s)	195, 265, 1246
Eco57I	CTGAAG	4 cut(s)	126, 869, 1104, 1548
Eco81I	CCTNAGG	1 cut(s)	855
Eco88I	CYCGRG	3 cut(s)	119, 196, 2166
Eco91I	GGTNACC	1 cut(s)	457
EcoICRI	GAGCTC	3 cut(s)	195, 265, 1246
EcoNI	CCTNNNNNAGG	2 cut(s)	1323, 1362
EcoO109I	RGGNCCY	1 cut(s)	1576
EcoO65I	GGTNACC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	1157
EcoRII	CCWGG	3 cut(s)	281, 931, 1357
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	3 cut(s)	1145, 1590, 2036
EcoT22I	ATGCAT	2 cut(s)	925, 929
EcoT38I	GRGCYC	5 cut(s)	197, 228, 267, 1248, 1452
ErhI	CCWWGG	3 cut(s)	1145, 1590, 2036
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	3 cut(s)	117, 172, 1249
FbaI	TGATCA	1 cut(s)	1303
FokI	GGATG	6 cut(s)	542, 914, 1213, 1976, 2053, 2412
FriOI	GRGCYC	5 cut(s)	197, 228, 267, 1248, 1452
FspBI	CTAG	4 cut(s)	1040, 1101, 1364, 2172
GlaI	GCGC	4 cut(s)	139, 175, 208, 629
GsaI	CCCAGC	2 cut(s)	1116, 1449
GsuI	CTGGAG	2 cut(s)	954, 2159
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	6 cut(s)	242, 254, 333, 661, 1239, 1577
HapII	CCGG	6 cut(s)	120, 329, 566, 1201, 2051, 2420
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	4 cut(s)	140, 176, 209, 630
Hin6I	GCGC	4 cut(s)	138, 174, 207, 628
HinP1I	GCGC	4 cut(s)	138, 174, 207, 628
HincII	GTYRAC	3 cut(s)	388, 501, 1132
HindII	GTYRAC	3 cut(s)	388, 501, 1132
HindIII	AAGCTT	2 cut(s)	614, 2268
HpaII	CCGG	6 cut(s)	120, 329, 566, 1201, 2051, 2420
HphI	GGTGA	4 cut(s)	955, 1364, 2161, 2372
Hpy166II	GTNNAC	6 cut(s)	388, 487, 501, 899, 1091, 1132
Hpy188I	TCNGA	8 cut(s)	145, 163, 405, 539, 1177, 1567, 1722, 1810
Hpy188III	TCNNGA	8 cut(s)	156, 863, 905, 1040, 1190, 1746, 2420, 2454
Hpy8I	GTNNAC	6 cut(s)	388, 487, 501, 899, 1091, 1132
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	7 cut(s)	448, 863, 1079, 1207, 1612, 1895, 1954
HpyCH4IV	ACGT	2 cut(s)	2024, 2399
HpyF3I	CTNAG	6 cut(s)	227, 348, 855, 1660, 1807, 2087
HpySE526I	ACGT	2 cut(s)	2024, 2399
HspAI	GCGC	4 cut(s)	138, 174, 207, 628
Kpn2I	TCCGGA	1 cut(s)	2419
KroI	GCCGGC	1 cut(s)	2050
KroNI	GCCGGC	1 cut(s)	2052
Ksp22I	TGATCA	1 cut(s)	1303
Kzo9I	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
LguI	GCTCTTC	2 cut(s)	179, 345
LmnI	GCTCC	3 cut(s)	14, 305, 841
LweI	GCATC	6 cut(s)	910, 936, 1579, 1895, 1954, 2197
MaeI	CTAG	4 cut(s)	1040, 1101, 1364, 2172
MaeII	ACGT	2 cut(s)	2024, 2399
MaeIII	GTNAC	5 cut(s)	457, 943, 949, 1821, 2367
MalI	GATC	9 cut(s)	160, 236, 759, 799, 861, 912, 1305, 1356, 2424
MbiI	CCGCTC	1 cut(s)	1917
MboI	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
MboII	GAAGA	9 cut(s)	196, 332, 598, 752, 878, 920, 1988, 2290, 2293
MflI	RGATCY	2 cut(s)	234, 910
MhlI	GDGCHC	8 cut(s)	191, 197, 228, 267, 489, 1248, 1452, 1815
MlsI	TGGCCA	1 cut(s)	1239
MluCI	AATT	8 cut(s)	398, 976, 1023, 1053, 1157, 2072, 2193, 2377
MluI	ACGCGT	2 cut(s)	216, 713
MluNI	TGGCCA	1 cut(s)	1239
MlyI	GAGTC	5 cut(s)	496, 975, 1127, 1812, 2152
MmeI	TCCRAC	1 cut(s)	420
Mox20I	TGGCCA	1 cut(s)	1239
Mph1103I	ATGCAT	2 cut(s)	925, 929
MroI	TCCGGA	1 cut(s)	2419
MroNI	GCCGGC	1 cut(s)	2050
MscI	TGGCCA	1 cut(s)	1239
MseI	TTAA	7 cut(s)	543, 593, 972, 1056, 1251, 2183, 2345
MslI	CAYNNNNRTG	4 cut(s)	751, 1299, 1910, 2282
Msp20I	TGGCCA	1 cut(s)	1239
MspA1I	CMGCKG	2 cut(s)	1397, 1856
MspI	CCGG	6 cut(s)	120, 329, 566, 1201, 2051, 2420
MspR9I	CCNGG	7 cut(s)	120, 121, 283, 330, 566, 933, 1359
Mva1269I	GAATGC	1 cut(s)	1846
MvaI	CCWGG	3 cut(s)	283, 933, 1359
MvnI	CGCG	6 cut(s)	176, 218, 245, 630, 715, 1408
NaeI	GCCGGC	1 cut(s)	2052
NciI	CCSGG	4 cut(s)	120, 121, 330, 566
NcoI	CCATGG	1 cut(s)	1590
NdeII	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
NgoMIV	GCCGGC	1 cut(s)	2050
NlaIV	GGNNCC	2 cut(s)	879, 1317
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	3 cut(s)	943, 949, 1821
NsiI	ATGCAT	2 cut(s)	925, 929
NspI	RCATGY	2 cut(s)	34, 927
PaeI	GCATGC	1 cut(s)	927
PaeR7I	CTCGAG	2 cut(s)	196, 2166
PagI	TCATGA	2 cut(s)	862, 2453
PaqCI	CACCTGC	2 cut(s)	143, 1493
PceI	AGGCCT	1 cut(s)	661
PciI	ACATGT	1 cut(s)	30
PciSI	GCTCTTC	2 cut(s)	179, 345
PcsI	WCGNNNNNNNCGW	3 cut(s)	267, 366, 880
PctI	GAATGC	1 cut(s)	1846
PdiI	GCCGGC	1 cut(s)	2052
PfeI	GAWTC	5 cut(s)	152, 569, 1097, 1472, 1867
PfoI	TCCNGGA	1 cut(s)	1357
Ple19I	CGATCG	1 cut(s)	161
PleI	GAGTC	5 cut(s)	496, 974, 1127, 1811, 2151
PpsI	GAGTC	5 cut(s)	496, 974, 1127, 1811, 2151
PscI	ACATGT	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	1692
Psp124BI	GAGCTC	3 cut(s)	197, 267, 1248
Psp1406I	AACGTT	1 cut(s)	2024
Psp6I	CCWGG	3 cut(s)	281, 931, 1357
PspEI	GGTNACC	1 cut(s)	457
PspFI	CCCAGC	2 cut(s)	1112, 1445
PspGI	CCWGG	3 cut(s)	281, 931, 1357
PspN4I	GGNNCC	2 cut(s)	879, 1317
PspPI	GGNCC	5 cut(s)	240, 253, 331, 1187, 1576
PspXI	VCTCGAGB	2 cut(s)	196, 2166
PstI	CTGCAG	2 cut(s)	1669, 2070
PstNI	CAGNNNCTG	2 cut(s)	844, 1397
PsuI	RGATCY	2 cut(s)	234, 910
PvuI	CGATCG	1 cut(s)	161
PvuII	CAGCTG	2 cut(s)	1397, 1856
RsaI	GTAC	4 cut(s)	170, 248, 1092, 1515
RsaNI	GTAC	4 cut(s)	169, 247, 1091, 1514
RseI	CAYNNNNRTG	4 cut(s)	751, 1299, 1910, 2282
SacI	GAGCTC	3 cut(s)	197, 267, 1248
SapI	GCTCTTC	2 cut(s)	179, 345
SaqAI	TTAA	7 cut(s)	543, 593, 972, 1056, 1251, 2183, 2345
Sau3AI	GATC	9 cut(s)	158, 234, 757, 797, 859, 910, 1303, 1354, 2422
Sau96I	GGNCC	5 cut(s)	240, 253, 331, 1187, 1576
SchI	GAGTC	5 cut(s)	496, 975, 1127, 1812, 2152
ScrFI	CCNGG	7 cut(s)	120, 121, 283, 330, 566, 933, 1359
SduI	GDGCHC	8 cut(s)	191, 197, 228, 267, 489, 1248, 1452, 1815
SfaNI	GCATC	6 cut(s)	910, 936, 1579, 1895, 1954, 2197
SfcI	CTRYAG	4 cut(s)	1119, 1455, 1665, 2066
Sfr274I	CTCGAG	2 cut(s)	196, 2166
SinI	GGWCC	1 cut(s)	1187
SlaI	CTCGAG	2 cut(s)	196, 2166
SmaI	CCCGGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	4 cut(s)	751, 1299, 1910, 2282
SmlI	CTYRAG	2 cut(s)	196, 2166
SmoI	CTYRAG	2 cut(s)	196, 2166
SphI	GCATGC	1 cut(s)	927
Sse9I	AATT	8 cut(s)	398, 976, 1023, 1053, 1157, 2072, 2193, 2377
SseBI	AGGCCT	1 cut(s)	661
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	4 cut(s)	1040, 1101, 1364, 2172
SstI	GAGCTC	3 cut(s)	197, 267, 1248
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	7 cut(s)	118, 119, 281, 328, 564, 931, 1357
StyI	CCWWGG	3 cut(s)	1145, 1590, 2036
TaiI	ACGT	2 cut(s)	2027, 2402
TasI	AATT	8 cut(s)	398, 976, 1023, 1053, 1157, 2072, 2193, 2377
TatI	WGTACW	1 cut(s)	1090
TauI	GCSGC	3 cut(s)	179, 245, 328
TfiI	GAWTC	5 cut(s)	152, 569, 1097, 1472, 1867
Tru1I	TTAA	7 cut(s)	543, 593, 972, 1056, 1251, 2183, 2345
Tru9I	TTAA	7 cut(s)	543, 593, 972, 1056, 1251, 2183, 2345
TscAI	CASTG	5 cut(s)	489, 658, 958, 1459, 1607
TseFI	GTSAC	3 cut(s)	943, 949, 1821
Tsp45I	GTSAC	3 cut(s)	943, 949, 1821
TspMI	CCCGGG	1 cut(s)	119
TspRI	CASTG	5 cut(s)	489, 658, 958, 1459, 1607
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	1187
XagI	CCTNNNNNAGG	2 cut(s)	1323, 1362
XapI	RAATTY	4 cut(s)	398, 1023, 1157, 2072
XbaI	TCTAGA	1 cut(s)	1039
XceI	RCATGY	2 cut(s)	34, 927
XhoI	CTCGAG	2 cut(s)	196, 2166
XmaI	CCCGGG	1 cut(s)	119
XspI	CTAG	4 cut(s)	1040, 1101, 1364, 2172
Zsp2I	ATGCAT	2 cut(s)	925, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.