pycom04g10030

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0012721
Physical Location & Seq
Reverse (-)
12758673 .. 12759514
842 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGGACTTAGCGACAAGGACATTGTTGCATTATCCGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGTTCTGGATTCGAGGGACCCTGGACAACGAACCCTCTCATTTTTGACAACTCCTATTTCAAGGAACTTCTTAGTGGGGAGAAAGAAGGTCTTCTTCAGCTGCCATCAGATAAAGCTCTTCTCGAGGATCCAGTCTTTCACCCTCTTGTTGAGACTTATGCTGCGGACGAAGACGCCTTCTTTGCTGATTATGCCGAAGCACATTTGAAGCTCTCCGAGCTTGGATTTGCGGATGCTGAGTAA

Protein Analysis

104

Amino Acids

11.35

Weight (kDa)

4.5

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 79 9.7e-15 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012721)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09640 AT3G09640
fragaria_vesca FvH4_6g15200 FvH4_6g15200
malus_domestica MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica Prupe.6G242200_v2.0.a1
pyrus_communis pycom04g10030 pycom12g12390
rosa_chinensis RchiOBHm_Chr3g0468551
rosa_laevigata RLG00000024423
rosa_multiflora Rmu_sc0009516.1_g000008
rosa_roxburghii Rroxscaffold_6G00412700
rosa_rugosa Rorug03G0095800 Rorug03G0095900
rosa_samantha Rh3BG166500 Rh3DG165900
rosa_wichuraiana Rw3G013620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AciI CCGC 2 cut(s) 233, 299
AclWI GGATC 2 cut(s) 191, 204
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 2 cut(s) 130, 277
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 4 cut(s) 169, 185, 280, 289
AluI AGCT 4 cut(s) 169, 185, 280, 289
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 191, 204
Ama87I CYCGRG 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 169, 230
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 86
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 57
BbsI GAAGAC 2 cut(s) 152, 246
BbvI GCAGC 2 cut(s) 156, 217
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 2 cut(s) 170, 231
BlsI GCNGC 2 cut(s) 171, 232
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 4 cut(s) 59, 87, 88, 198
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 152, 246
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 48, 89
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 48, 89
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 156, 217
BshNI GGYRCC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 18, 99
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 18, 99
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 233, 299
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 4 cut(s) 59, 87, 88, 198
BspPI GGATC 2 cut(s) 191, 204
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 48, 89
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 8, 140, 306
BstENI CCTNNNNNAGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 251, 260, 286
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 156, 217
BstV2I GAAGAC 2 cut(s) 152, 246
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 251
CviJI RGCY 4 cut(s) 169, 185, 280, 289
CviKI_1 RGCY 4 cut(s) 169, 185, 280, 289
DdeI CTNAG 3 cut(s) 8, 140, 306
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaiI YATR 2 cut(s) 228, 261
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 147, 179
FaqI GGGAC 2 cut(s) 18, 99
Fnu4HI GCNGC 2 cut(s) 170, 231
Fsp4HI GCNGC 2 cut(s) 170, 231
GluI GCNGC 2 cut(s) 170, 231
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 243
HinfI GANTC 1 cut(s) 78
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 178, 286
Hpy188III TCNNGA 2 cut(s) 75, 191
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 149, 256
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 260, 286
HpyF3I CTNAG 3 cut(s) 8, 140, 306
Hsp92I GRCGYC 1 cut(s) 243
KflI GGGWCCC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 196
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 49, 60, 76, 103, 213
Lsp1109I GCAGC 2 cut(s) 156, 217
LweI GCATC 1 cut(s) 292
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 152, 155, 179, 251
MflI RGATCY 1 cut(s) 196
MnlI CCTC 4 cut(s) 76, 114, 187, 222
MroXI GAANNNNTTC 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 251, 260, 286
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 4 cut(s) 59, 87, 88, 198
PaeR7I CTCGAG 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 171, 232
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 4 cut(s) 59, 87, 88, 198
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 192
SatI GCNGC 2 cut(s) 170, 231
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 91
SetI ASST 7 cut(s) 50, 59, 160, 171, 187, 282, 291
SfaNI GCATC 1 cut(s) 292
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SsiI CCGC 2 cut(s) 233, 299
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 48
TaqI TCGA 2 cut(s) 81, 192
TfiI GAWTC 1 cut(s) 78
TseI GCWGC 2 cut(s) 169, 230
VpaK11BI GGWCC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.