pycom04g10850

Plant protein 1589 of unknown function (A_thal_3526)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
13643861 .. 13644426
566 bp
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UTR
Exon/CDS
Intron
pycom04g10850.3

Sequence Viewer

Length: 216 bp
ATGGGAGACTCTTCTGCTTCATACATCCACTTGGTGCACCATTTAATCGAGGAGTGCATCATATTCAACATGAGCAAAGAGGAGTGCATGGAAGCCCTCTCTAAGCATGCTAACATAAAACCCATCATTACCTCCACAGTGTGGAAGGAGTTAGAGAAGGAGAACAGAGAGTTCTTTGAGGCCTACACGAAGAGCAGGGAAGCAGGATCGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.2

Weight (kDa)

5.48

Isoelectric Point (pI)

61.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AclWI GGATC 1 cut(s) 214
AdeI CACNNNGTG 2 cut(s) 34, 141
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 39
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 1 cut(s) 214
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 131
BmsI GCATC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 65, 95
BseSI GKGCMC 1 cut(s) 39
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 206
BspANI GGCC 1 cut(s) 182
BspPI GGATC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 185
BssMI GATC 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 16, 185
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 110
BstSLI GKGCMC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 108
CviAII CATG 3 cut(s) 70, 88, 107
CviJI RGCY 2 cut(s) 95, 182
CviKI_1 RGCY 2 cut(s) 95, 182
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
DraIII CACNNNGTG 2 cut(s) 34, 141
Eam1104I CTCTTC 2 cut(s) 16, 185
EarI CTCTTC 2 cut(s) 16, 185
Eco147I AGGCCT 1 cut(s) 182
FaeI CATG 3 cut(s) 73, 91, 110
FaiI YATR 6 cut(s) 22, 62, 71, 89, 108, 116
FatI CATG 3 cut(s) 69, 87, 106
FokI GGATG 1 cut(s) 11
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 3 cut(s) 73, 91, 110
HinfI GANTC 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 139, 151
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 37, 57, 87
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 3 cut(s) 73, 91, 110
Kzo9I GATC 1 cut(s) 206
LguI GCTCTTC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 181, 189
LweI GCATC 1 cut(s) 66
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 2 cut(s) 3, 202
MhlI GDGCHC 1 cut(s) 39
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 5 cut(s) 43, 73, 107, 142, 172
MseI TTAA 1 cut(s) 44
NdeII GATC 1 cut(s) 206
NlaIII CATG 3 cut(s) 73, 91, 110
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PceI AGGCCT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 141
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 1 cut(s) 206
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 1 cut(s) 39
SetI ASST 1 cut(s) 134
SfaNI GCATC 1 cut(s) 66
SgeI CNNG 7 cut(s) 43, 61, 82, 100, 119, 199, 208
SphI GCATGC 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 182
StuI AGGCCT 1 cut(s) 182
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 48
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 141
VneI GTGCAC 1 cut(s) 35
XceI RCATGY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.