pycom12g13040

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0009837
Physical Location & Seq
Reverse (-)
15521662 .. 15522367
706 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13040.3

Sequence Viewer

Length: 318 bp
ATGGGAGACTCTTCTGCTTCATACATTCACTTGGTGCAACATTTAATTGAGGAGTGCATCATATTCAATATGAGCAAAGAGGAGTGCATGGAAGCCCTCTCTAAGCATGCAAACATAAAACCCATCATTACCTCCACAGTGTGGAAGGAGTTAGAGAAGGAGAACCAGGAGTTCTTTGAGGCCTACAACAAGAGCAGGGAAGCTAGATCCTCTGAGATGGTCACAGAGCAAAGAATCCAGAAGATGCTTTTTGATCTTTCTCAGAGCGGCGACAACTCCACCACCACCGATGACGGCGGCGATGAATCTGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

106

Amino Acids

12.01

Weight (kDa)

4.54

Isoelectric Point (pI)

72.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 2 cut(s) 267, 297
AclWI GGATC 1 cut(s) 201
AdeI CACNNNGTG 2 cut(s) 34, 141
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
AlwI GGATC 1 cut(s) 201
AoxI GGCC 1 cut(s) 180
BccI CCATC 2 cut(s) 131, 211
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 268, 298
BlsI GCNGC 2 cut(s) 269, 299
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 2 cut(s) 66, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 204, 275
BseRI GAGGAG 2 cut(s) 65, 95
BshFI GGCC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 206, 253, 310
BspACI CCGC 2 cut(s) 267, 297
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 205, 274
BspPI GGATC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 267
BssMI GATC 3 cut(s) 206, 253, 310
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 102, 213, 261
BstKTI GATC 3 cut(s) 209, 256, 313
BstMBI GATC 3 cut(s) 206, 253, 310
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 108
CviAII CATG 2 cut(s) 88, 107
CviJI RGCY 3 cut(s) 95, 182, 203
CviKI_1 RGCY 3 cut(s) 95, 182, 203
DdeI CTNAG 3 cut(s) 102, 213, 261
DpnI GATC 3 cut(s) 208, 255, 312
DpnII GATC 3 cut(s) 206, 253, 310
DraIII CACNNNGTG 2 cut(s) 34, 141
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 91, 110
FaiI YATR 6 cut(s) 22, 62, 71, 89, 108, 116
FatI CATG 2 cut(s) 87, 106
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 268, 298
Fsp4HI GCNGC 2 cut(s) 268, 298
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 268, 298
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 2 cut(s) 91, 110
HinfI GANTC 3 cut(s) 8, 234, 305
Hpy188I TCNGA 3 cut(s) 214, 264, 310
Hpy188III TCNNGA 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 139, 151
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 37, 57, 87, 110
HpyF3I CTNAG 3 cut(s) 102, 213, 261
Hsp92II CATG 2 cut(s) 91, 110
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 206, 253, 310
LpnPI CCDG 4 cut(s) 152, 179, 181, 251
LweI GCATC 2 cut(s) 66, 234
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 208, 255, 312
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 206, 253, 310
MboII GAAGA 2 cut(s) 3, 253
MflI RGATCY 1 cut(s) 206
MluCI AATT 1 cut(s) 45
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 6 cut(s) 43, 73, 107, 142, 172, 220
MseI TTAA 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
NdeII GATC 3 cut(s) 206, 253, 310
NlaIII CATG 2 cut(s) 91, 110
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PceI AGGCCT 1 cut(s) 182
PfeI GAWTC 2 cut(s) 234, 305
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 269, 299
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PsuI RGATCY 1 cut(s) 206
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 2 cut(s) 268, 298
Sau3AI GATC 3 cut(s) 206, 253, 310
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 167
SetI ASST 2 cut(s) 134, 205
SfaNI GCATC 2 cut(s) 66, 234
SgeI CNNG 9 cut(s) 43, 100, 119, 178, 179, 202, 208, 216, 250
SphI GCATGC 1 cut(s) 110
Sse9I AATT 1 cut(s) 45
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 2 cut(s) 267, 297
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 139
TasI AATT 1 cut(s) 45
TauI GCSGC 2 cut(s) 270, 300
TfiI GAWTC 2 cut(s) 234, 305
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 9, 318
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 141
XceI RCATGY 1 cut(s) 110
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.