Rroxscaffold_6G00413520

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009837
Physical Location & Seq
Reverse (-)
35895799 .. 35897173
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413520.1

Sequence Viewer

Length: 324 bp
ATGGGTGATTCTTCATCTGCGTCATACATCCACATGGTGCACCACTTGATCGAGGAGTGCATCATCTTCAACATGAGCAGAGAAGAGTGCATGGAAGCCCTCTCCAAGCATGCTAATATAAAACCCATTATTACCTCCACAGTTTGGAAGGAGCTGGAGAAGGAGAACAAGGAGTTCTTTGAGGCCTACACAAACAGCAGAGAAGCTGTGGGAGAATCCAAAATGGAGAGAAAGCAAAGAATCCAGAAGATGCTTTCGGGTCATCTTTCTCAAACAGACACAGACGACAGCAGCTGTACCAATACTACCGAATCCGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

107

Amino Acids

12.28

Weight (kDa)

5.06

Isoelectric Point (pI)

68.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 13 - 64 1e-26 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 3 cut(s) 154, 206, 294
AluI AGCT 3 cut(s) 154, 206, 294
Alw21I GWGCWC 1 cut(s) 42
Alw44I GTGCAC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 303
BfaI CTAG 1 cut(s) 322
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
BmsI GCATC 2 cut(s) 69, 240
BpmI CTGGAG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 1 cut(s) 303
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 1 cut(s) 185
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 294
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 297
CviAII CATG 4 cut(s) 34, 73, 91, 110
CviJI RGCY 5 cut(s) 98, 154, 185, 206, 294
CviKI_1 RGCY 5 cut(s) 98, 154, 185, 206, 294
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DraIII CACNNNGTG 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 185
FaeI CATG 4 cut(s) 37, 76, 94, 113
FaiI YATR 6 cut(s) 25, 35, 74, 92, 111, 119
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 4 cut(s) 33, 72, 90, 109
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 1 cut(s) 322
GluI GCNGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 185
HgaI GACGC 1 cut(s) 9
Hin1II CATG 4 cut(s) 37, 76, 94, 113
HinfI GANTC 4 cut(s) 8, 215, 240, 311
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 142, 154
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 40, 60, 90
Hsp92II CATG 4 cut(s) 37, 76, 94, 113
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 140, 257
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 2 cut(s) 69, 240
MaeI CTAG 1 cut(s) 322
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 4 cut(s) 3, 58, 95, 259
MhlI GDGCHC 1 cut(s) 42
MnlI CCTC 4 cut(s) 46, 110, 145, 175
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 294
NdeII GATC 1 cut(s) 48
NlaIII CATG 4 cut(s) 37, 76, 94, 113
NspI RCATGY 1 cut(s) 113
PaeI GCATGC 1 cut(s) 113
PceI AGGCCT 1 cut(s) 185
PfeI GAWTC 4 cut(s) 8, 215, 240, 311
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 294
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 42
SetI ASST 4 cut(s) 137, 156, 208, 296
SfaNI GCATC 2 cut(s) 69, 240
SmiMI CAYNNNNRTG 1 cut(s) 32
SphI GCATGC 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 185
SspMI CTAG 1 cut(s) 322
StuI AGGCCT 1 cut(s) 185
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 51
TfiI GAWTC 4 cut(s) 8, 215, 240, 311
TseI GCWGC 1 cut(s) 291
Van91I CCANNNNNTGG 1 cut(s) 144
VneI GTGCAC 1 cut(s) 38
XceI RCATGY 1 cut(s) 113
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.