Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009837

Physical Location & Seq

Genomic Coordinates Reverse (-)

6943255 .. 6944985

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0089000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTATCCTCTCAATTTCAAAGACATGCCCACCTCGGCTTCGTCCTTGTTTTCGGCCTATGCCTCATTGGCGGCATTCATCATGTTGGTCCGCTCCATAATGGACCAACTCTTCCCTCATGAGTTGCGTTCATACATTTACTCGATCTTCAACAAATTCTTCTACACCCCTCGATCTTTGGACATGACAATCATTATTGATGAGAAGTGTGGCTACATCAGCAATCAAGTTTATGAAGCAGCGGAAGTCTACCTCCGAACCAAGATTAGTGATTTAAATGAGCGTCTCCGAGTGAGCAAAACACCAGGGCAGAAGACTCTCAACATTGCGGTTGACAAAGACCAAGAAATCATTGATTTCTTTGATGGCATTAAACTTAGGTGGTCTTTTGTGTGCGCCGAAGACAAGAAAGGTGGTTCTGGTAATAATGAGAAGCATCAGTTTGAGCTGACTTTCAACAAGAAGCACAGGGCCAAGGTGATAGACTCGTACATGCAACATGTGTTGGCTCGGGCCGATGCAATTAGACAAGAGGAAAAGGTTCTCAAGCTTGATTCCCAGTATTCGGGTTCAATAGATCTCGAGCACCCTTCAACTTTTGACACATTGGCTATGGACCCCGAGCTTAAGAGGACAATTATCGAGGATTTGGATAGGTTTGTGAGGAGGAAAGAGTTTTATAGGAAGATTGGCAAGGCTTGGAAAAGAGGGTATTTGTTGTATGGTCCACCCGGTACTGGCAAATCAAGTTTGATTGCAGCCATGGCTAATTATCTCAAGTTTGATGTATATGATTTGGAGCTTACTAGTATTTATGACAACTCAGAATTGAGGAGGATAATGCTGTCTACTTCAAATCGTTCTATTTTGGTCATTGAGGATATTGATTGCACCGTGGACATACAAAACAGAGAATCAGAGGAGGGCAATAATGAACAATCTAACACCAGGTTAACACTCTCGGGACTATTGAACTTTATAGATGGTCTGTGGTCGAGCTGTGGTGACGAGAGAATTATTGTGTTCACCACCAACAACAAGGATAAACTAGACCCTGCATTGTTGCGTCCTGGTCGAATGGATGTGCACATTCACATGTCGTATTGCACCCCGAGCGGGTTCAGAGTCTTAGCCTCTAACTACCTTGGCATTCATGAAAGCAACCCTCATCGCCTCTCTGGAGAAATTGAAGGTTTAATAGAGAGCACCGAGGTGATCCCTGCTGAAGTTGCAGAGGAGCTAATGAAGAGTGATGATGCTGATGTTGCTCTTGAAGGACTTGTCTGTTTCCTCAAAAGAAAGAAATCCGAGAGCAGTAAAATCAAAGGCGAGGGGACTAACAACATTGAGATTGAAGAAACAGATGAAGATGCAAAGAAAAAACAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_thal_3526

Protein Analysis

463

Amino Acids

52.85

Weight (kDa)

5.5

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	38 - 132	1.3e-23	Domain associated at C-terminal with AAA
AAA	PF00004	238 - 367	1.7e-21	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	369 - 439	3e-21	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02580 AT5G02580
fragaria_vesca	FvH4_6g14600
malus_domestica	MD04G1119000.v1.1 MD12G1136300.v1.1
prunus_persica	Prupe.6G248700_v2.0.a1 Prupe.6G248700_v2.0.a1
pyrus_communis	pycom04g10850 pycom12g13040
rosa_chinensis	RchiOBHm_Chr3g0467681
rosa_laevigata	RLG00000024481
rosa_multiflora	Rmu_sc0011632.1_g000004 Rmu_sc0040187.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413520
rosa_rugosa	Rorug03G0089000 Rorug03G0089100
rosa_samantha	Rh3AG137400 Rh3BG158800 Rh3CG158700 Rh3DG159300
rosa_wichuraiana	Rw3G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	93, 1116
AccI	GTMKAC	2 cut(s)	249, 848
AciI	CCGC	5 cut(s)	71, 91, 242, 329, 1116
AclWI	GGATC	1 cut(s)	1210
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	1245
AfaI	GTAC	2 cut(s)	491, 736
AfiI	CCNNNNNNNGG	3 cut(s)	565, 737, 1116
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	2 cut(s)	499, 1095
AhlI	ACTAGT	1 cut(s)	806
AjnI	CCWGG	3 cut(s)	304, 947, 1069
AleI	CACNNNNGTG	1 cut(s)	1211
AluBI	AGCT	7 cut(s)	448, 550, 625, 802, 999, 1240, 1389
AluI	AGCT	7 cut(s)	448, 550, 625, 802, 999, 1240, 1389
Alw21I	GWGCWC	3 cut(s)	588, 1089, 1208
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	1085
AlwI	GGATC	1 cut(s)	1210
Ama87I	CYCGRG	5 cut(s)	510, 581, 620, 961, 1111
AoxI	GGCC	3 cut(s)	54, 471, 513
ApaLI	GTGCAC	1 cut(s)	1085
ApeKI	GCWGC	2 cut(s)	239, 758
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	6 cut(s)	88, 103, 471, 513, 616, 725
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	4 cut(s)	490, 1016, 1018, 1225
AvaI	CYCGRG	5 cut(s)	510, 581, 620, 961, 1111
AvaII	GGWCC	4 cut(s)	88, 103, 616, 725
BaeGI	GKGCMC	1 cut(s)	1089
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbsI	GAAGAC	2 cut(s)	320, 408
Bbv12I	GWGCWC	3 cut(s)	588, 1089, 1208
BbvI	GCAGC	2 cut(s)	251, 770
BccI	CCATC	2 cut(s)	359, 977
BciT130I	CCWGG	3 cut(s)	306, 949, 1071
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	290
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	2 cut(s)	807, 1049
BfrI	CTTAAG	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	3 cut(s)	72, 240, 759
BlsI	GCNGC	3 cut(s)	73, 241, 760
Bme1390I	CCNGG	4 cut(s)	306, 732, 949, 1071
Bme18I	GGWCC	4 cut(s)	88, 103, 616, 725
BmeT110I	CYCGRG	5 cut(s)	510, 581, 620, 961, 1111
BmgT120I	GGNCC	6 cut(s)	88, 103, 471, 513, 616, 725
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	4 cut(s)	306, 732, 949, 1071
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	4 cut(s)	445, 508, 1246, 1360
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	2 cut(s)	320, 408
BpmI	CTGGAG	1 cut(s)	1200
BpuEI	CTTGAG	2 cut(s)	530, 761
BpuMI	CCSGG	1 cut(s)	732
BsaJI	CCNNGG	7 cut(s)	33, 305, 474, 762, 894, 1144, 1209
Bsc4I	CCNNNNNNNGG	3 cut(s)	565, 737, 1116
Bse1I	ACTGG	2 cut(s)	559, 742
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	306, 949, 1071
BseDI	CCNNGG	7 cut(s)	33, 305, 474, 762, 894, 1144, 1209
BseGI	GGATG	1 cut(s)	1087
BseLI	CCNNNNNNNGG	3 cut(s)	565, 737, 1116
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	837
BseNI	ACTGG	2 cut(s)	559, 742
BseRI	GAGGAG	4 cut(s)	679, 847, 935, 1250
BseSI	GKGCMC	1 cut(s)	1089
BseXI	GCAGC	2 cut(s)	251, 770
BshFI	GGCC	3 cut(s)	56, 473, 515
BsiHKAI	GWGCWC	3 cut(s)	588, 1089, 1208
BsiHKCI	CYCGRG	5 cut(s)	510, 581, 620, 961, 1111
BsiSI	CCGG	1 cut(s)	732
BslFI	GGGAC	2 cut(s)	978, 1348
BslI	CCNNNNNNNGG	3 cut(s)	565, 737, 1116
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	978, 1348
BsmI	GAATGC	2 cut(s)	74, 1149
BsnI	GGCC	3 cut(s)	56, 473, 515
BsoBI	CYCGRG	5 cut(s)	510, 581, 620, 961, 1111
Bsp1286I	GDGCHC	3 cut(s)	588, 1089, 1208
Bsp143I	GATC	4 cut(s)	144, 173, 577, 1215
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	5 cut(s)	71, 91, 242, 329, 1116
BspANI	GGCC	3 cut(s)	56, 473, 515
BspCNI	CTCAG	1 cut(s)	836
BspHI	TCATGA	2 cut(s)	118, 1153
BspLI	GGNNCC	1 cut(s)	618
BspPI	GGATC	1 cut(s)	1210
BspTI	CTTAAG	1 cut(s)	626
BsrBI	CCGCTC	2 cut(s)	93, 1116
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	559, 742
BssECI	CCNNGG	7 cut(s)	33, 305, 474, 762, 894, 1144, 1209
BssMI	GATC	4 cut(s)	144, 173, 577, 1215
BssT1I	CCWWGG	3 cut(s)	474, 762, 1144
Bst2UI	CCWGG	3 cut(s)	306, 949, 1071
Bst4CI	ACNGT	1 cut(s)	895
Bst6I	CTCTTC	2 cut(s)	116, 1241
BstAFI	CTTAAG	1 cut(s)	626
BstDEI	CTNAG	3 cut(s)	377, 823, 1129
BstDSI	CCRYGG	2 cut(s)	762, 894
BstF5I	GGATG	1 cut(s)	1087
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	4 cut(s)	147, 176, 580, 1218
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	4 cut(s)	144, 173, 577, 1215
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 219, 764, 1113, 1229, 1265
BstNI	CCWGG	3 cut(s)	306, 949, 1071
BstNSI	RCATGY	4 cut(s)	28, 496, 503, 1099
BstSCI	CCNGG	4 cut(s)	304, 730, 947, 1069
BstSLI	GKGCMC	1 cut(s)	1089
BstV1I	GCAGC	2 cut(s)	251, 770
BstV2I	GAAGAC	2 cut(s)	320, 408
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	56, 473, 515
BtgI	CCRYGG	2 cut(s)	762, 894
BtgZI	GCGATG	1 cut(s)	1154
BtsCI	GGATG	1 cut(s)	1087
CciI	TCATGA	2 cut(s)	118, 1153
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	6 cut(s)	88, 103, 471, 513, 616, 725
CseI	GACGC	2 cut(s)	272, 1055
CsiI	ACCWGGT	1 cut(s)	947
Csp6I	GTAC	2 cut(s)	490, 735
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	9 cut(s)	25, 82, 119, 184, 493, 500, 763, 1096, 1154
CviQI	GTAC	2 cut(s)	490, 735
DdeI	CTNAG	3 cut(s)	377, 823, 1129
DpnI	GATC	4 cut(s)	146, 175, 579, 1217
DpnII	GATC	4 cut(s)	144, 173, 577, 1215
DraI	TTTAAA	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	116, 1241
EarI	CTCTTC	2 cut(s)	116, 1241
Eco130I	CCWWGG	3 cut(s)	474, 762, 1144
Eco47I	GGWCC	4 cut(s)	88, 103, 616, 725
Eco57I	CTGAAG	1 cut(s)	1245
Eco88I	CYCGRG	5 cut(s)	510, 581, 620, 961, 1111
EcoRII	CCWGG	3 cut(s)	304, 947, 1069
EcoT14I	CCWWGG	3 cut(s)	474, 762, 1144
ErhI	CCWWGG	3 cut(s)	474, 762, 1144
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	9 cut(s)	28, 85, 122, 187, 496, 503, 766, 1099, 1157
FaqI	GGGAC	2 cut(s)	978, 1348
FatI	CATG	9 cut(s)	24, 81, 118, 183, 492, 499, 762, 1095, 1153
FauI	CCCGC	1 cut(s)	1109
FblI	GTMKAC	2 cut(s)	249, 848
Fnu4HI	GCNGC	3 cut(s)	72, 240, 759
FokI	GGATG	1 cut(s)	1094
Fsp4HI	GCNGC	3 cut(s)	72, 240, 759
FspBI	CTAG	2 cut(s)	807, 1049
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	3 cut(s)	72, 240, 759
GsuI	CTGGAG	1 cut(s)	1200
HaeIII	GGCC	3 cut(s)	56, 473, 515
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	2 cut(s)	272, 1055
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	9 cut(s)	28, 85, 122, 187, 496, 503, 766, 1099, 1157
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	2 cut(s)	334, 954
HindII	GTYRAC	2 cut(s)	334, 954
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	5 cut(s)	316, 485, 554, 914, 1125
HpaI	GTTAAC	1 cut(s)	954
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	4 cut(s)	490, 1016, 1018, 1225
Hpy166II	GTNNAC	8 cut(s)	250, 334, 728, 849, 898, 954, 1026, 1087
Hpy188I	TCNGA	6 cut(s)	257, 290, 826, 919, 1124, 1309
Hpy188III	TCNNGA	6 cut(s)	119, 581, 963, 1154, 1179, 1271
Hpy8I	GTNNAC	8 cut(s)	250, 334, 728, 849, 898, 954, 1026, 1087
HpyAV	CCTTC	3 cut(s)	600, 1184, 1268
HpyCH4III	ACNGT	1 cut(s)	895
HpyCH4V	TGCA	9 cut(s)	496, 521, 758, 891, 1058, 1087, 1107, 1232, 1373
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 219, 764, 1113, 1229, 1265
HpyF3I	CTNAG	3 cut(s)	377, 823, 1129
Hsp92II	CATG	9 cut(s)	28, 85, 122, 187, 496, 503, 766, 1099, 1157
HspAI	GCGC	1 cut(s)	396
KspAI	GTTAAC	1 cut(s)	954
Kzo9I	GATC	4 cut(s)	144, 173, 577, 1215
LmnI	GCTCC	3 cut(s)	98, 799, 1237
Lsp1109I	GCAGC	2 cut(s)	251, 770
LweI	GCATC	4 cut(s)	445, 508, 1246, 1360
MabI	ACCWGGT	1 cut(s)	947
MaeI	CTAG	2 cut(s)	807, 1049
MaeIII	GTNAC	1 cut(s)	1004
MalI	GATC	4 cut(s)	146, 175, 579, 1217
MbiI	CCGCTC	2 cut(s)	93, 1116
MboI	GATC	4 cut(s)	144, 173, 577, 1215
MboII	GAAGA	9 cut(s)	103, 139, 151, 325, 413, 697, 1258, 1367, 1379
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	3 cut(s)	588, 1089, 1208
MluCI	AATT	8 cut(s)	13, 155, 522, 636, 769, 827, 1014, 1185
MlyI	GAGTC	3 cut(s)	310, 479, 1134
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	5 cut(s)	275, 372, 627, 953, 1196
MslI	CAYNNNNRTG	2 cut(s)	1094, 1211
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	732
MspR9I	CCNGG	4 cut(s)	306, 732, 949, 1071
Mva1269I	GAATGC	2 cut(s)	74, 1149
MvaI	CCWGG	3 cut(s)	306, 949, 1071
MwoI	GCNNNNNNNGC	6 cut(s)	68, 219, 764, 1113, 1229, 1265
NciI	CCSGG	1 cut(s)	732
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	4 cut(s)	144, 173, 577, 1215
NlaIII	CATG	9 cut(s)	28, 85, 122, 187, 496, 503, 766, 1099, 1157
NlaIV	GGNNCC	1 cut(s)	618
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	1004
NspI	RCATGY	4 cut(s)	28, 496, 503, 1099
OliI	CACNNNNGTG	1 cut(s)	1211
PaeR7I	CTCGAG	1 cut(s)	581
PagI	TCATGA	2 cut(s)	118, 1153
PciI	ACATGT	2 cut(s)	499, 1095
PctI	GAATGC	2 cut(s)	74, 1149
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	554, 914
PkrI	GCNGC	3 cut(s)	73, 241, 760
PleI	GAGTC	3 cut(s)	310, 479, 1133
PpsI	GAGTC	3 cut(s)	310, 479, 1133
PscI	ACATGT	2 cut(s)	499, 1095
Psp6I	CCWGG	3 cut(s)	304, 947, 1069
PspGI	CCWGG	3 cut(s)	304, 947, 1069
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	6 cut(s)	88, 103, 471, 513, 616, 725
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	2 cut(s)	491, 736
RsaNI	GTAC	2 cut(s)	490, 735
RseI	CAYNNNNRTG	2 cut(s)	1094, 1211
SaqAI	TTAA	5 cut(s)	275, 372, 627, 953, 1196
SatI	GCNGC	3 cut(s)	72, 240, 759
Sau3AI	GATC	4 cut(s)	144, 173, 577, 1215
Sau96I	GGNCC	6 cut(s)	88, 103, 471, 513, 616, 725
SchI	GAGTC	3 cut(s)	310, 479, 1134
ScrFI	CCNGG	4 cut(s)	306, 732, 949, 1071
SduI	GDGCHC	3 cut(s)	588, 1089, 1208
SexAI	ACCWGGT	1 cut(s)	947
SfaNI	GCATC	4 cut(s)	445, 508, 1246, 1360
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	4 cut(s)	88, 103, 616, 725
SlaI	CTCGAG	1 cut(s)	581
SmiI	ATTTAAAT	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	1094, 1211
SmlI	CTYRAG	4 cut(s)	545, 581, 626, 776
SmoI	CTYRAG	4 cut(s)	545, 581, 626, 776
SpeI	ACTAGT	1 cut(s)	806
Sse9I	AATT	8 cut(s)	13, 155, 522, 636, 769, 827, 1014, 1185
SsiI	CCGC	5 cut(s)	71, 91, 242, 329, 1116
SspMI	CTAG	2 cut(s)	807, 1049
StyD4I	CCNGG	4 cut(s)	304, 730, 947, 1069
StyI	CCWWGG	3 cut(s)	474, 762, 1144
SwaI	ATTTAAAT	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	895
TaqI	TCGA	6 cut(s)	143, 172, 582, 642, 995, 1075
TasI	AATT	8 cut(s)	13, 155, 522, 636, 769, 827, 1014, 1185
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	554, 914
Tru1I	TTAA	5 cut(s)	275, 372, 627, 953, 1196
Tru9I	TTAA	5 cut(s)	275, 372, 627, 953, 1196
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	2 cut(s)	239, 758
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	8 cut(s)	67, 120, 249, 948, 1142, 1170, 1259, 1380
Vha464I	CTTAAG	1 cut(s)	626
VneI	GTGCAC	1 cut(s)	1085
VpaK11BI	GGWCC	4 cut(s)	88, 103, 616, 725
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	4 cut(s)	28, 496, 503, 1099
XhoI	CTCGAG	1 cut(s)	581
XmiI	GTMKAC	2 cut(s)	249, 848
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	807, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.