mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 |
| malus_domestica | MD04G1179600.v1.1 MD12G1194700.v1.1 |
| prunus_persica | Prupe.6G299600_v2.0.a1 Prupe.6G299600_v2.0.a1 |
| pyrus_communis | pycom04g15860 pycom12g18080 pycom12g18090 |
| rosa_chinensis | RchiOBHm_Chr3g0459591 |
| rosa_laevigata | RLG00000025076 |
| rosa_multiflora | Rmu_co8219898.1_g000001 Rmu_sc0023410.1_g000001 Rmu_sc0023706.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00420150 |
| rosa_rugosa | Rorug03G0036600 |
| rosa_samantha | Rh3AG095600 Rh3BG097500 Rh3CG099900 Rh3DG099200 |
| rosa_wichuraiana | Rw0G013840 Rw0G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 411 |
| AarI | CACCTGC | 1 cut(s) | 1499 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1905 |
| AatII | GACGTC | 2 cut(s) | 772, 1497 |
| Acc36I | ACCTGC | 1 cut(s) | 1499 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 344, 954 |
| AciI | CCGC | 5 cut(s) | 29, 44, 52, 83, 1785 |
| AclWI | GGATC | 1 cut(s) | 910 |
| AcoI | YGGCCR | 2 cut(s) | 645, 1203 |
| AcsI | RAATTY | 4 cut(s) | 634, 1240, 1555, 1794 |
| AcyI | GRCGYC | 2 cut(s) | 769, 1494 |
| AfaI | GTAC | 3 cut(s) | 1155, 1446, 1881 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 344, 525, 954, 1145 |
| AflIII | ACRYGT | 1 cut(s) | 1840 |
| AgsI | TTSAA | 9 cut(s) | 305, 508, 605, 715, 733, 1145, 1222, 1637, 1719 |
| AjnI | CCWGG | 3 cut(s) | 251, 1065, 1353 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 626, 658 |
| Alw26I | GTCTC | 3 cut(s) | 53, 847, 1223 |
| AlwI | GGATC | 1 cut(s) | 910 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1339, 1787 |
| Ama87I | CYCGRG | 1 cut(s) | 844 |
| ApeKI | GCWGC | 6 cut(s) | 16, 110, 1051, 1421, 1787, 2041 |
| ApoI | RAATTY | 4 cut(s) | 634, 1240, 1555, 1794 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 162, 194 |
| AspLEI | GCGC | 1 cut(s) | 1851 |
| AspS9I | GGNCC | 7 cut(s) | 335, 958, 1148, 1336, 1357, 1584, 1898 |
| AsuC2I | CCSGG | 2 cut(s) | 71, 1587 |
| AsuHPI | GGTGA | 8 cut(s) | 49, 268, 359, 1502, 1526, 1605, 1870, 2011 |
| AvaI | CYCGRG | 1 cut(s) | 844 |
| AvaII | GGWCC | 3 cut(s) | 335, 958, 1898 |
| AxyI | CCTNAGG | 1 cut(s) | 311 |
| BaeGI | GKGCMC | 2 cut(s) | 1388, 1942 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1483, 1516 |
| BalI | TGGCCA | 2 cut(s) | 647, 1205 |
| BanII | GRGCYC | 1 cut(s) | 71 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1137, 1169 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| BbvI | GCAGC | 5 cut(s) | 28, 122, 1038, 1433, 1774 |
| BccI | CCATC | 5 cut(s) | 181, 264, 986, 1624, 1818 |
| BceAI | ACGGC | 2 cut(s) | 57, 2014 |
| BciT130I | CCWGG | 3 cut(s) | 253, 1067, 1355 |
| BciVI | GTATCC | 1 cut(s) | 1462 |
| BcnI | CCSGG | 2 cut(s) | 71, 1587 |
| BcoDI | GTCTC | 3 cut(s) | 53, 847, 1223 |
| BfaI | CTAG | 1 cut(s) | 1091 |
| BfmI | CTRYAG | 3 cut(s) | 556, 743, 798 |
| BfuAI | ACCTGC | 1 cut(s) | 1499 |
| BfuI | GTATCC | 1 cut(s) | 1462 |
| BisI | GCNGC | 7 cut(s) | 17, 111, 1052, 1422, 1785, 1788, 2042 |
| BlsI | GCNGC | 7 cut(s) | 18, 112, 1053, 1423, 1786, 1789, 2043 |
| Bme1390I | CCNGG | 5 cut(s) | 71, 253, 1067, 1355, 1587 |
| Bme18I | GGWCC | 3 cut(s) | 335, 958, 1898 |
| BmeT110I | CYCGRG | 1 cut(s) | 844 |
| BmgT120I | GGNCC | 7 cut(s) | 335, 958, 1148, 1336, 1357, 1584, 1898 |
| BmiI | GGNNCC | 2 cut(s) | 807, 959 |
| BmrFI | CCNGG | 5 cut(s) | 71, 253, 1067, 1355, 1587 |
| BmsI | GCATC | 3 cut(s) | 788, 1534, 1817 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 1337 |
| BpuEI | CTTGAG | 2 cut(s) | 413, 1184 |
| BpuMI | CCSGG | 2 cut(s) | 71, 1587 |
| BsaAI | YACGTR | 1 cut(s) | 1448 |
| BsaHI | GRCGYC | 2 cut(s) | 769, 1494 |
| BsaI | GGTCTC | 1 cut(s) | 1223 |
| BsaJI | CCNNGG | 5 cut(s) | 252, 441, 1200, 1360, 1646 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1251, 1281 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 344, 525, 954, 1145 |
| Bse1I | ACTGG | 3 cut(s) | 859, 914, 1900 |
| Bse21I | CCTNAGG | 1 cut(s) | 311 |
| Bse3DI | GCAATG | 4 cut(s) | 195, 993, 1206, 1545 |
| BseBI | CCWGG | 3 cut(s) | 253, 1067, 1355 |
| BseDI | CCNNGG | 5 cut(s) | 252, 441, 1200, 1360, 1646 |
| BseGI | GGATG | 9 cut(s) | 173, 499, 515, 831, 943, 997, 1231, 1829, 1977 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 344, 525, 954, 1145 |
| BseMI | GCAATG | 4 cut(s) | 195, 993, 1206, 1545 |
| BseMII | CTCAG | 7 cut(s) | 416, 920, 945, 1119, 1667, 1828, 1925 |
| BseNI | ACTGG | 3 cut(s) | 859, 914, 1900 |
| BseRI | GAGGAG | 4 cut(s) | 196, 206, 1787, 1863 |
| BseSI | GKGCMC | 2 cut(s) | 1388, 1942 |
| BseXI | GCAGC | 5 cut(s) | 28, 122, 1038, 1433, 1774 |
| BsgI | GTGCAG | 1 cut(s) | 570 |
| BsiHKCI | CYCGRG | 1 cut(s) | 844 |
| BsiSI | CCGG | 3 cut(s) | 71, 210, 1587 |
| BslFI | GGGAC | 2 cut(s) | 1153, 1181 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 344, 525, 954, 1145 |
| BsmAI | GTCTC | 3 cut(s) | 53, 847, 1223 |
| BsmBI | CGTCTC | 1 cut(s) | 53 |
| BsmFI | GGGAC | 2 cut(s) | 1153, 1181 |
| Bso31I | GGTCTC | 1 cut(s) | 1223 |
| BsoBI | CYCGRG | 1 cut(s) | 844 |
| Bsp1286I | GDGCHC | 3 cut(s) | 71, 1388, 1942 |
| Bsp143I | GATC | 1 cut(s) | 902 |
| BspACI | CCGC | 5 cut(s) | 29, 44, 52, 83, 1785 |
| BspCNI | CTCAG | 7 cut(s) | 415, 919, 944, 1118, 1668, 1827, 1926 |
| BspLI | GGNNCC | 2 cut(s) | 807, 959 |
| BspMAI | CTGCAG | 2 cut(s) | 747, 802 |
| BspMI | ACCTGC | 1 cut(s) | 1499 |
| BspPI | GGATC | 1 cut(s) | 910 |
| BspTNI | GGTCTC | 1 cut(s) | 1223 |
| BsrDI | GCAATG | 4 cut(s) | 195, 993, 1206, 1545 |
| BsrI | ACTGG | 3 cut(s) | 859, 914, 1900 |
| BssECI | CCNNGG | 5 cut(s) | 252, 441, 1200, 1360, 1646 |
| BssMI | GATC | 1 cut(s) | 902 |
| BssNI | GRCGYC | 2 cut(s) | 769, 1494 |
| BssT1I | CCWWGG | 4 cut(s) | 441, 1200, 1360, 1646 |
| Bst2UI | CCWGG | 3 cut(s) | 253, 1067, 1355 |
| Bst4CI | ACNGT | 3 cut(s) | 810, 1267, 1972 |
| Bst6I | CTCTTC | 2 cut(s) | 1252, 1722 |
| BstACI | GRCGYC | 2 cut(s) | 769, 1494 |
| BstBAI | YACGTR | 1 cut(s) | 1448 |
| BstC8I | GCNNGC | 4 cut(s) | 660, 1072, 1076, 1543 |
| BstDEI | CTNAG | 8 cut(s) | 311, 402, 906, 931, 1105, 1676, 1814, 1934 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| BstF5I | GGATG | 9 cut(s) | 173, 499, 515, 831, 943, 997, 1231, 1829, 1977 |
| BstHHI | GCGC | 1 cut(s) | 1851 |
| BstKTI | GATC | 1 cut(s) | 905 |
| BstMAI | GTCTC | 3 cut(s) | 53, 847, 1223 |
| BstMBI | GATC | 1 cut(s) | 902 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1383, 1418, 1547 |
| BstNI | CCWGG | 3 cut(s) | 253, 1067, 1355 |
| BstNSI | RCATGY | 2 cut(s) | 440, 1844 |
| BstSCI | CCNGG | 5 cut(s) | 69, 251, 1065, 1353, 1585 |
| BstSFI | CTRYAG | 3 cut(s) | 556, 743, 798 |
| BstSLI | GKGCMC | 2 cut(s) | 1388, 1942 |
| BstSNI | TACGTA | 1 cut(s) | 1448 |
| BstV1I | GCAGC | 5 cut(s) | 28, 122, 1038, 1433, 1774 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 1 cut(s) | 902 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 180, 881, 1361 |
| BstYI | RGATCY | 1 cut(s) | 902 |
| Bsu36I | CCTNAGG | 1 cut(s) | 311 |
| BsuI | GTATCC | 1 cut(s) | 1462 |
| BtsCI | GGATG | 9 cut(s) | 173, 499, 515, 831, 943, 997, 1231, 1829, 1977 |
| BtsI | GCAGTG | 3 cut(s) | 807, 922, 1489 |
| BtsIMutI | CAGTG | 6 cut(s) | 466, 807, 922, 1404, 1489, 1673 |
| BveI | ACCTGC | 1 cut(s) | 1499 |
| Cac8I | GCNNGC | 4 cut(s) | 660, 1072, 1076, 1543 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1339, 1787 |
| CfoI | GCGC | 1 cut(s) | 1851 |
| Cfr13I | GGNCC | 7 cut(s) | 335, 958, 1148, 1336, 1357, 1584, 1898 |
| CseI | GACGC | 3 cut(s) | 8, 1057, 1590 |
| Csp6I | GTAC | 3 cut(s) | 1154, 1445, 1880 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1288, 1323, 1492, 1527 |
| CviAII | CATG | 9 cut(s) | 241, 330, 419, 437, 976, 1519, 1660, 1841, 1991 |
| CviQI | GTAC | 3 cut(s) | 1154, 1445, 1880 |
| DdeI | CTNAG | 8 cut(s) | 311, 402, 906, 931, 1105, 1676, 1814, 1934 |
| DpnI | GATC | 1 cut(s) | 904 |
| DpnII | GATC | 1 cut(s) | 902 |
| DraI | TTTAAA | 1 cut(s) | 853 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1905 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1905 |
| EaeI | YGGCCR | 2 cut(s) | 645, 1203 |
| Eam1104I | CTCTTC | 2 cut(s) | 1252, 1722 |
| EarI | CTCTTC | 2 cut(s) | 1252, 1722 |
| EciI | GGCGGA | 1 cut(s) | 44 |
| Eco105I | TACGTA | 1 cut(s) | 1448 |
| Eco130I | CCWWGG | 4 cut(s) | 441, 1200, 1360, 1646 |
| Eco24I | GRGCYC | 1 cut(s) | 71 |
| Eco31I | GGTCTC | 1 cut(s) | 1223 |
| Eco47I | GGWCC | 3 cut(s) | 335, 958, 1898 |
| Eco81I | CCTNAGG | 1 cut(s) | 311 |
| Eco88I | CYCGRG | 1 cut(s) | 844 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1148, 1336, 1357 |
| EcoRI | GAATTC | 2 cut(s) | 634, 1240 |
| EcoRII | CCWGG | 3 cut(s) | 251, 1065, 1353 |
| EcoT14I | CCWWGG | 4 cut(s) | 441, 1200, 1360, 1646 |
| EcoT22I | ATGCAT | 1 cut(s) | 325 |
| EcoT38I | GRGCYC | 1 cut(s) | 71 |
| ErhI | CCWWGG | 4 cut(s) | 441, 1200, 1360, 1646 |
| Esp3I | CGTCTC | 1 cut(s) | 53 |
| FaeI | CATG | 9 cut(s) | 244, 333, 422, 440, 979, 1522, 1663, 1844, 1994 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2018, 2050 |
| FaqI | GGGAC | 2 cut(s) | 1153, 1181 |
| FatI | CATG | 9 cut(s) | 240, 329, 418, 436, 975, 1518, 1659, 1840, 1990 |
| FauI | CCCGC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 7 cut(s) | 17, 111, 1052, 1422, 1785, 1788, 2042 |
| FokI | GGATG | 9 cut(s) | 160, 502, 506, 818, 930, 1004, 1238, 1836, 1964 |
| FriOI | GRGCYC | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 7 cut(s) | 17, 111, 1052, 1422, 1785, 1788, 2042 |
| FspBI | CTAG | 1 cut(s) | 1091 |
| GlaI | GCGC | 1 cut(s) | 1850 |
| GluI | GCNGC | 7 cut(s) | 17, 111, 1052, 1422, 1785, 1788, 2042 |
| GsuI | CTGGAG | 1 cut(s) | 1337 |
| HapII | CCGG | 3 cut(s) | 71, 210, 1587 |
| HgaI | GACGC | 3 cut(s) | 8, 1057, 1590 |
| HhaI | GCGC | 1 cut(s) | 1851 |
| Hin1I | GRCGYC | 2 cut(s) | 769, 1494 |
| Hin1II | CATG | 9 cut(s) | 244, 333, 422, 440, 979, 1522, 1663, 1844, 1994 |
| Hin6I | GCGC | 1 cut(s) | 1849 |
| HinP1I | GCGC | 1 cut(s) | 1849 |
| HincII | GTYRAC | 1 cut(s) | 1653 |
| HindII | GTYRAC | 1 cut(s) | 1653 |
| HindIII | AAGCTT | 4 cut(s) | 285, 684, 1539, 1862 |
| HpaII | CCGG | 3 cut(s) | 71, 210, 1587 |
| HphI | GGTGA | 8 cut(s) | 49, 268, 359, 1502, 1526, 1605, 1870, 2011 |
| Hpy166II | GTNNAC | 6 cut(s) | 338, 617, 709, 1605, 1653, 1975 |
| Hpy8I | GTNNAC | 6 cut(s) | 338, 617, 709, 1605, 1653, 1975 |
| Hpy99I | CGWCG | 2 cut(s) | 24, 1051 |
| HpyAV | CCTTC | 7 cut(s) | 758, 1031, 1121, 1139, 1216, 1401, 1658 |
| HpyCH4III | ACNGT | 3 cut(s) | 810, 1267, 1972 |
| HpyCH4IV | ACGT | 6 cut(s) | 488, 769, 1132, 1322, 1447, 1494 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1383, 1418, 1547 |
| HpyF3I | CTNAG | 8 cut(s) | 311, 402, 906, 931, 1105, 1676, 1814, 1934 |
| HpySE526I | ACGT | 6 cut(s) | 488, 769, 1132, 1322, 1447, 1494 |
| Hsp92I | GRCGYC | 2 cut(s) | 769, 1494 |
| Hsp92II | CATG | 9 cut(s) | 244, 333, 422, 440, 979, 1522, 1663, 1844, 1994 |
| HspAI | GCGC | 1 cut(s) | 1849 |
| Kzo9I | GATC | 1 cut(s) | 902 |
| LmnI | GCTCC | 4 cut(s) | 31, 118, 427, 1952 |
| Lsp1109I | GCAGC | 5 cut(s) | 28, 122, 1038, 1433, 1774 |
| LweI | GCATC | 3 cut(s) | 788, 1534, 1817 |
| MaeI | CTAG | 1 cut(s) | 1091 |
| MaeII | ACGT | 6 cut(s) | 488, 769, 1132, 1322, 1447, 1494 |
| MaeIII | GTNAC | 7 cut(s) | 37, 1133, 1448, 1490, 1514, 1611, 1907 |
| MalI | GATC | 1 cut(s) | 904 |
| MboI | GATC | 1 cut(s) | 902 |
| MboII | GAAGA | 7 cut(s) | 240, 617, 1175, 1239, 1338, 1739, 2009 |
| MflI | RGATCY | 1 cut(s) | 902 |
| MhlI | GDGCHC | 3 cut(s) | 71, 1388, 1942 |
| MlsI | TGGCCA | 2 cut(s) | 647, 1205 |
| MluCI | AATT | 9 cut(s) | 11, 570, 634, 1240, 1555, 1560, 1632, 1794, 1914 |
| MluNI | TGGCCA | 2 cut(s) | 647, 1205 |
| MlyI | GAGTC | 2 cut(s) | 849, 1175 |
| MmeI | TCCRAC | 2 cut(s) | 184, 471 |
| Mox20I | TGGCCA | 2 cut(s) | 647, 1205 |
| Mph1103I | ATGCAT | 1 cut(s) | 325 |
| MscI | TGGCCA | 2 cut(s) | 647, 1205 |
| MseI | TTAA | 7 cut(s) | 852, 863, 1011, 1062, 1559, 1913, 2050 |
| MslI | CAYNNNNRTG | 3 cut(s) | 328, 653, 884 |
| Msp20I | TGGCCA | 2 cut(s) | 647, 1205 |
| MspA1I | CMGCKG | 1 cut(s) | 1787 |
| MspI | CCGG | 3 cut(s) | 71, 210, 1587 |
| MspR9I | CCNGG | 5 cut(s) | 71, 253, 1067, 1355, 1587 |
| MvaI | CCWGG | 3 cut(s) | 253, 1067, 1355 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1383, 1418, 1547 |
| NciI | CCSGG | 2 cut(s) | 71, 1587 |
| NdeII | GATC | 1 cut(s) | 902 |
| NlaIII | CATG | 9 cut(s) | 244, 333, 422, 440, 979, 1522, 1663, 1844, 1994 |
| NlaIV | GGNNCC | 2 cut(s) | 807, 959 |
| NmeAIII | GCCGAG | 1 cut(s) | 555 |
| NmuCI | GTSAC | 6 cut(s) | 37, 1133, 1490, 1514, 1611, 1907 |
| NsiI | ATGCAT | 1 cut(s) | 325 |
| NspI | RCATGY | 2 cut(s) | 440, 1844 |
| PaqCI | CACCTGC | 1 cut(s) | 1499 |
| PciI | ACATGT | 1 cut(s) | 1840 |
| PfeI | GAWTC | 9 cut(s) | 259, 374, 504, 575, 592, 1041, 1406, 1682, 1888 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 344, 954 |
| PkrI | GCNGC | 7 cut(s) | 18, 112, 1053, 1423, 1786, 1789, 2043 |
| PleI | GAGTC | 2 cut(s) | 848, 1174 |
| PpsI | GAGTC | 2 cut(s) | 848, 1174 |
| Ppu21I | YACGTR | 1 cut(s) | 1448 |
| PscI | ACATGT | 1 cut(s) | 1840 |
| PsiI | TTATAA | 1 cut(s) | 411 |
| Psp6I | CCWGG | 3 cut(s) | 251, 1065, 1353 |
| PspGI | CCWGG | 3 cut(s) | 251, 1065, 1353 |
| PspN4I | GGNNCC | 2 cut(s) | 807, 959 |
| PspPI | GGNCC | 7 cut(s) | 335, 958, 1148, 1336, 1357, 1584, 1898 |
| PstI | CTGCAG | 2 cut(s) | 747, 802 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1339, 1787 |
| PsuI | RGATCY | 1 cut(s) | 902 |
| RsaI | GTAC | 3 cut(s) | 1155, 1446, 1881 |
| RsaNI | GTAC | 3 cut(s) | 1154, 1445, 1880 |
| RseI | CAYNNNNRTG | 3 cut(s) | 328, 653, 884 |
| SaqAI | TTAA | 7 cut(s) | 852, 863, 1011, 1062, 1559, 1913, 2050 |
| SatI | GCNGC | 7 cut(s) | 17, 111, 1052, 1422, 1785, 1788, 2042 |
| Sau3AI | GATC | 1 cut(s) | 902 |
| Sau96I | GGNCC | 7 cut(s) | 335, 958, 1148, 1336, 1357, 1584, 1898 |
| SchI | GAGTC | 2 cut(s) | 849, 1175 |
| ScrFI | CCNGG | 5 cut(s) | 71, 253, 1067, 1355, 1587 |
| SduI | GDGCHC | 3 cut(s) | 71, 1388, 1942 |
| SfaNI | GCATC | 3 cut(s) | 788, 1534, 1817 |
| SfcI | CTRYAG | 3 cut(s) | 556, 743, 798 |
| SinI | GGWCC | 3 cut(s) | 335, 958, 1898 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 328, 653, 884 |
| SmlI | CTYRAG | 2 cut(s) | 392, 1163 |
| SmoI | CTYRAG | 2 cut(s) | 392, 1163 |
| SnaBI | TACGTA | 1 cut(s) | 1448 |
| Sse9I | AATT | 9 cut(s) | 11, 570, 634, 1240, 1555, 1560, 1632, 1794, 1914 |
| SsiI | CCGC | 5 cut(s) | 29, 44, 52, 83, 1785 |
| SspI | AATATT | 2 cut(s) | 729, 1417 |
| SspMI | CTAG | 1 cut(s) | 1091 |
| StyD4I | CCNGG | 5 cut(s) | 69, 251, 1065, 1353, 1585 |
| StyI | CCWWGG | 4 cut(s) | 441, 1200, 1360, 1646 |
| TaaI | ACNGT | 3 cut(s) | 810, 1267, 1972 |
| TaiI | ACGT | 6 cut(s) | 491, 772, 1135, 1325, 1450, 1497 |
| TaqI | TCGA | 4 cut(s) | 700, 762, 966, 1114 |
| TasI | AATT | 9 cut(s) | 11, 570, 634, 1240, 1555, 1560, 1632, 1794, 1914 |
| TauI | GCSGC | 1 cut(s) | 1787 |
| TfiI | GAWTC | 9 cut(s) | 259, 374, 504, 575, 592, 1041, 1406, 1682, 1888 |
| Tru1I | TTAA | 7 cut(s) | 852, 863, 1011, 1062, 1559, 1913, 2050 |
| Tru9I | TTAA | 7 cut(s) | 852, 863, 1011, 1062, 1559, 1913, 2050 |
| TscAI | CASTG | 6 cut(s) | 466, 807, 929, 1404, 1489, 1680 |
| TseFI | GTSAC | 6 cut(s) | 37, 1133, 1490, 1514, 1611, 1907 |
| TseI | GCWGC | 6 cut(s) | 16, 110, 1051, 1421, 1787, 2041 |
| Tsp45I | GTSAC | 6 cut(s) | 37, 1133, 1490, 1514, 1611, 1907 |
| TspDTI | ATGAA | 7 cut(s) | 318, 407, 647, 1253, 1383, 1476, 1648 |
| TspGWI | ACGGA | 5 cut(s) | 77, 386, 634, 950, 1295 |
| TspRI | CASTG | 6 cut(s) | 466, 807, 929, 1404, 1489, 1680 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 344, 954 |
| VpaK11BI | GGWCC | 3 cut(s) | 335, 958, 1898 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| XapI | RAATTY | 4 cut(s) | 634, 1240, 1555, 1794 |
| XceI | RCATGY | 2 cut(s) | 440, 1844 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 655 |
| XspI | CTAG | 1 cut(s) | 1091 |
| ZraI | GACGTC | 2 cut(s) | 770, 1495 |
| Zsp2I | ATGCAT | 1 cut(s) | 325 |