Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023410.1

Orthogroup ID

OG0006938

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 745

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 731 bp

tttgttgtccagccaaagcagcgtgagtggtcttttgggttatactataacaggctgtagtgcccatccttctgtagcacccggatttctataccttcgctcctgcaggacaataccggttgtccaatatgtcaataatgtgattgtagagcttgtatcagagtatgctttcaaattagcctctaaatgggcaagcactgactccactcgcttgaattctacccaagcatcattgtctctggctgtttctaaggcaaaggaggcggcaacacttggtgcatgtctcttatgtgttgcagggggtgtccgactggtccaagaattgtaccgtgaaaccattccaacctggttactctcaccaaaggaagagaagcttgggaaggcaagttccgtatcgcgtgtaatggagggctatgcaatggcatatctggtgattctggcaggttcaattgaatggggctttggagacaagctgccagcatgtgcactctctagaagagccagcattgttgggattcatatggactttctggcaggcgttttagagggaaacatatcacttggttgtgatcctgctacatggaaatcttatgtttcttgtctggtgggattaatggtaaactttgctccgacgtggattaaagatgtgaaggtggagacactgaggaaattggccggtggattgagggggtggcacgaatgtgagttggccctttctcttcttgaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.12

Weight (kDa)

8.61

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250
malus_domestica	MD04G1179600.v1.1 MD12G1194700.v1.1
prunus_persica	Prupe.6G299600_v2.0.a1 Prupe.6G299600_v2.0.a1
pyrus_communis	pycom04g15860 pycom12g18080 pycom12g18090
rosa_chinensis	RchiOBHm_Chr3g0459591
rosa_laevigata	RLG00000025076
rosa_multiflora	Rmu_co8219898.1_g000001 Rmu_sc0023410.1_g000001 Rmu_sc0023706.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420150
rosa_rugosa	Rorug03G0036600
rosa_samantha	Rh3AG095600 Rh3BG097500 Rh3CG099900 Rh3DG099200
rosa_wichuraiana	Rw0G013840 Rw0G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	432
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	173, 215, 448, 453, 726
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	4 cut(s)	358, 390, 445, 477
AleI	CACNNNNGTG	1 cut(s)	700
AloI	GAACNNNNNNTCC	2 cut(s)	371, 403
AluBI	AGCT	3 cut(s)	152, 374, 473
AluI	AGCT	3 cut(s)	152, 374, 473
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	4 cut(s)	241, 288, 460, 651
Alw44I	GTGCAC	1 cut(s)	484
AlwI	GGATC	1 cut(s)	564
AoxI	GGCC	2 cut(s)	673, 709
ApaLI	GTGCAC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	19, 473
ApoI	RAATTY	1 cut(s)	215
AseI	ATTAAT	1 cut(s)	612
AsiGI	ACCGGT	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	314, 710
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	349, 443
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	2 cut(s)	65, 488
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	31, 460
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	4 cut(s)	241, 288, 460, 651
BfaI	CTAG	1 cut(s)	493
BfmI	CTRYAG	3 cut(s)	56, 73, 104
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	3 cut(s)	20, 265, 474
BlsI	GCNGC	3 cut(s)	21, 266, 475
Bme1390I	CCNGG	2 cut(s)	82, 347
Bme18I	GGWCC	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	314, 710
BmrFI	CCNGG	2 cut(s)	82, 347
BmsI	GCATC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse118I	RCCGGY	2 cut(s)	116, 675
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	2 cut(s)	65, 488
BseXI	GCAGC	2 cut(s)	31, 460
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	675, 711
BshTI	ACCGGT	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	82, 117, 676
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	4 cut(s)	241, 288, 460, 651
BsnI	GGCC	2 cut(s)	675, 711
Bsp1286I	GDGCHC	2 cut(s)	65, 488
Bsp143I	GATC	1 cut(s)	569
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	675, 711
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	564
BspQI	GCTCTTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	2 cut(s)	116, 675
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	2 cut(s)	116, 675
BssMI	GATC	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	3 cut(s)	361, 491, 724
BstC8I	GCNNGC	4 cut(s)	194, 478, 503, 536
BstDEI	CTNAG	2 cut(s)	250, 663
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	398
BstKTI	GATC	1 cut(s)	572
BstMAI	GTCTC	4 cut(s)	241, 288, 460, 651
BstMBI	GATC	1 cut(s)	569
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 261
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	2 cut(s)	283, 484
BstSCI	CCNGG	2 cut(s)	80, 345
BstSFI	CTRYAG	3 cut(s)	56, 73, 104
BstSLI	GKGCMC	2 cut(s)	65, 488
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	31, 460
BsuRI	GGCC	2 cut(s)	675, 711
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	196, 660
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	4 cut(s)	194, 478, 503, 536
Cfr10I	RCCGGY	2 cut(s)	116, 675
Cfr13I	GGNCC	2 cut(s)	314, 710
CsiI	ACCWGGT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	326
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	3 cut(s)	280, 481, 580
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	250, 663
DpnI	GATC	1 cut(s)	571
DpnII	GATC	1 cut(s)	569
DraIII	CACNNNGTG	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	3 cut(s)	361, 491, 724
EarI	CTCTTC	3 cut(s)	361, 491, 724
Eco47I	GGWCC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	283, 484, 583
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FatI	CATG	3 cut(s)	279, 480, 579
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	20, 265, 474
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	20, 265, 474
FspBI	CTAG	1 cut(s)	493
GluI	GCNGC	3 cut(s)	20, 265, 474
HaeIII	GGCC	2 cut(s)	675, 711
HapII	CCGG	3 cut(s)	82, 117, 676
Hin1II	CATG	3 cut(s)	283, 484, 583
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	3 cut(s)	201, 434, 515
HpaII	CCGG	3 cut(s)	82, 117, 676
HphI	GGTGA	2 cut(s)	349, 443
Hpy166II	GTNNAC	2 cut(s)	486, 620
Hpy188I	TCNGA	3 cut(s)	161, 309, 631
Hpy188III	TCNNGA	2 cut(s)	493, 723
Hpy8I	GTNNAC	2 cut(s)	486, 620
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	4 cut(s)	79, 105, 374, 644
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	5 cut(s)	106, 279, 297, 417, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 261
HpyF3I	CTNAG	2 cut(s)	250, 663
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	3 cut(s)	283, 484, 583
Kzo9I	GATC	1 cut(s)	569
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	2 cut(s)	105, 632
Lsp1109I	GCAGC	2 cut(s)	31, 460
LweI	GCATC	1 cut(s)	237
MabI	ACCWGGT	1 cut(s)	345
MaeI	CTAG	1 cut(s)	493
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	571
MboI	GATC	1 cut(s)	569
MboII	GAAGA	3 cut(s)	378, 508, 711
MfeI	CAATTG	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	65, 488
MluCI	AATT	5 cut(s)	174, 215, 321, 448, 669
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	3 cut(s)	332, 366, 654
MnlI	CCTC	6 cut(s)	191, 254, 401, 539, 658, 679
MroXI	GAANNNNTTC	1 cut(s)	337
MseI	TTAA	2 cut(s)	612, 640
MslI	CAYNNNNRTG	1 cut(s)	700
MspI	CCGG	3 cut(s)	82, 117, 676
MspR9I	CCNGG	2 cut(s)	82, 347
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	19, 261
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	1 cut(s)	569
NlaIII	CATG	3 cut(s)	283, 484, 583
NspI	RCATGY	2 cut(s)	283, 484
OliI	CACNNNNGTG	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	434, 515
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	21, 266, 475
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	314, 710
PstI	CTGCAG	1 cut(s)	108
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	700
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	612, 640
SatI	GCNGC	3 cut(s)	20, 265, 474
Sau3AI	GATC	1 cut(s)	569
Sau96I	GGNCC	2 cut(s)	314, 710
SbfI	CCTGCAGG	1 cut(s)	108
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	82, 347
SdaI	CCTGCAGG	1 cut(s)	108
SduI	GDGCHC	2 cut(s)	65, 488
SetI	ASST	8 cut(s)	97, 154, 348, 376, 446, 475, 636, 655
SexAI	ACCWGGT	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	3 cut(s)	56, 73, 104
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	700
Sse8387I	CCTGCAGG	1 cut(s)	108
Sse9I	AATT	5 cut(s)	174, 215, 321, 448, 669
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	80, 345
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	636
TasI	AATT	5 cut(s)	174, 215, 321, 448, 669
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	434, 515
Tru1I	TTAA	2 cut(s)	612, 640
Tru9I	TTAA	2 cut(s)	612, 640
TscAI	CASTG	2 cut(s)	203, 667
TseI	GCWGC	2 cut(s)	19, 473
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	203, 667
VneI	GTGCAC	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	215
XbaI	TCTAGA	1 cut(s)	492
XceI	RCATGY	2 cut(s)	283, 484
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.