mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 |
| malus_domestica | MD04G1179600.v1.1 MD12G1194700.v1.1 |
| prunus_persica | Prupe.6G299600_v2.0.a1 Prupe.6G299600_v2.0.a1 |
| pyrus_communis | pycom04g15860 pycom12g18080 pycom12g18090 |
| rosa_chinensis | RchiOBHm_Chr3g0459591 |
| rosa_laevigata | RLG00000025076 |
| rosa_multiflora | Rmu_co8219898.1_g000001 Rmu_sc0023410.1_g000001 Rmu_sc0023706.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00420150 |
| rosa_rugosa | Rorug03G0036600 |
| rosa_samantha | Rh3AG095600 Rh3BG097500 Rh3CG099900 Rh3DG099200 |
| rosa_wichuraiana | Rw0G013840 Rw0G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1691 |
| AarI | CACCTGC | 1 cut(s) | 1499 |
| Acc36I | ACCTGC | 3 cut(s) | 1499, 2680, 3584 |
| AccB1I | GGYRCC | 1 cut(s) | 1524 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 106, 2498 |
| AccBSI | CCGCTC | 1 cut(s) | 22 |
| AccII | CGCG | 1 cut(s) | 3550 |
| AclWI | GGATC | 8 cut(s) | 910, 1130, 1789, 2037, 2050, 3126, 3139, 3716 |
| AcoI | YGGCCR | 3 cut(s) | 51, 645, 3825 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AdeI | CACNNNGTG | 3 cut(s) | 1855, 2030, 3428 |
| AfaI | GTAC | 4 cut(s) | 1155, 1881, 2315, 3479 |
| AflIII | ACRYGT | 3 cut(s) | 1496, 1840, 2559 |
| AgeI | ACCGGT | 1 cut(s) | 3268 |
| AhlI | ACTAGT | 1 cut(s) | 3916 |
| AjiI | CACGTC | 4 cut(s) | 1172, 1820, 2560, 3786 |
| AjnI | CCWGG | 8 cut(s) | 254, 1065, 1585, 2255, 2342, 2978, 3232, 3497 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 626, 658, 2830, 2862, 3597, 3629 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2391, 2423 |
| Alw21I | GWGCWC | 3 cut(s) | 1851, 2281, 3640 |
| Alw44I | GTGCAC | 2 cut(s) | 1847, 3636 |
| AlwI | GGATC | 8 cut(s) | 910, 1130, 1789, 2037, 2050, 3126, 3139, 3716 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1268, 1400, 2300, 2539, 2942 |
| Ama87I | CYCGRG | 4 cut(s) | 1163, 2585, 2628, 3527 |
| ApaLI | GTGCAC | 2 cut(s) | 1847, 3636 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2054, 2086 |
| AseI | ATTAAT | 2 cut(s) | 1023, 3764 |
| AsiGI | ACCGGT | 1 cut(s) | 3268 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2571, 2928, 3489 |
| AspLEI | GCGC | 2 cut(s) | 118, 873 |
| AsuNHI | GCTAGC | 3 cut(s) | 1070, 2872, 2947 |
| AvaI | CYCGRG | 4 cut(s) | 1163, 2585, 2628, 3527 |
| AvaII | GGWCC | 7 cut(s) | 338, 941, 1707, 1898, 1996, 2035, 3466 |
| BaeGI | GKGCMC | 4 cut(s) | 360, 1851, 3217, 3640 |
| BalI | TGGCCA | 1 cut(s) | 647 |
| BamHI | GGATCC | 2 cut(s) | 2042, 3131 |
| BanI | GGYRCC | 1 cut(s) | 1524 |
| BanII | GRGCYC | 1 cut(s) | 3016 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1137, 1169 |
| BauI | CACGAG | 1 cut(s) | 2718 |
| BbsI | GAAGAC | 1 cut(s) | 518 |
| Bbv12I | GWGCWC | 3 cut(s) | 1851, 2281, 3640 |
| BccI | CCATC | 8 cut(s) | 347, 557, 986, 1283, 1818, 2479, 2500, 3225 |
| BceAI | ACGGC | 1 cut(s) | 287 |
| BciT130I | CCWGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| BclI | TGATCA | 1 cut(s) | 1915 |
| BcuI | ACTAGT | 1 cut(s) | 3916 |
| BfoI | RGCGCY | 2 cut(s) | 119, 874 |
| BfuAI | ACCTGC | 3 cut(s) | 1499, 2680, 3584 |
| Bme1390I | CCNGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| Bme18I | GGWCC | 7 cut(s) | 338, 941, 1707, 1898, 1996, 2035, 3466 |
| BmeT110I | CYCGRG | 4 cut(s) | 1163, 2585, 2628, 3527 |
| BmgBI | CACGTC | 4 cut(s) | 1172, 1820, 2560, 3786 |
| BmiI | GGNNCC | 8 cut(s) | 960, 1526, 1709, 1998, 2044, 2469, 2503, 3133 |
| BmrFI | CCNGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| BmrI | ACTGGG | 1 cut(s) | 2501 |
| BmtI | GCTAGC | 3 cut(s) | 1074, 2876, 2951 |
| BmuI | ACTGGG | 1 cut(s) | 2501 |
| BoxI | GACNNNNGTC | 1 cut(s) | 201 |
| BpiI | GAAGAC | 1 cut(s) | 518 |
| BpmI | CTGGAG | 2 cut(s) | 333, 2377 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1212 |
| BpuEI | CTTGAG | 4 cut(s) | 326, 2183, 2668, 2930 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2529 |
| BsaI | GGTCTC | 5 cut(s) | 221, 282, 520, 2393, 2646 |
| BsaWI | WCCGGW | 1 cut(s) | 3268 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2178, 2181, 2208, 2211 |
| Bse118I | RCCGGY | 2 cut(s) | 3268, 3827 |
| Bse1I | ACTGG | 9 cut(s) | 450, 859, 1631, 1900, 2394, 2450, 2507, 2647, 2735 |
| Bse3DI | GCAATG | 4 cut(s) | 1545, 1982, 2172, 3576 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2529 |
| BseBI | CCWGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| BseJI | GATNNNNATC | 1 cut(s) | 2529 |
| BseMI | GCAATG | 4 cut(s) | 1545, 1982, 2172, 3576 |
| BseMII | CTCAG | 7 cut(s) | 396, 798, 920, 1119, 1828, 1922, 3806 |
| BseNI | ACTGG | 9 cut(s) | 450, 859, 1631, 1900, 2394, 2450, 2507, 2647, 2735 |
| BseRI | GAGGAG | 8 cut(s) | 80, 209, 216, 236, 1787, 2199, 2202, 3109 |
| BseSI | GKGCMC | 4 cut(s) | 360, 1851, 3217, 3640 |
| BseYI | CCCAGC | 5 cut(s) | 119, 658, 1711, 2942, 3096 |
| BsgI | GTGCAG | 2 cut(s) | 1437, 2472 |
| Bsh1236I | CGCG | 1 cut(s) | 3550 |
| Bsh1285I | CGRYCG | 1 cut(s) | 384 |
| BshNI | GGYRCC | 1 cut(s) | 1524 |
| BshTI | ACCGGT | 1 cut(s) | 3268 |
| BsiEI | CGRYCG | 1 cut(s) | 384 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1851, 2281, 3640 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1163, 2585, 2628, 3527 |
| BsiSI | CCGG | 4 cut(s) | 163, 3269, 3460, 3828 |
| BslFI | GGGAC | 4 cut(s) | 1181, 1982, 2570, 2645 |
| BsmFI | GGGAC | 4 cut(s) | 1181, 1982, 2570, 2645 |
| Bso31I | GGTCTC | 5 cut(s) | 221, 282, 520, 2393, 2646 |
| BsoBI | CYCGRG | 4 cut(s) | 1163, 2585, 2628, 3527 |
| Bsp1286I | GDGCHC | 6 cut(s) | 360, 1851, 2281, 3016, 3217, 3640 |
| Bsp1407I | TGTACA | 1 cut(s) | 2313 |
| Bsp143I | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| Bsp19I | CCATGG | 3 cut(s) | 87, 1646, 2611 |
| BspCNI | CTCAG | 7 cut(s) | 397, 797, 919, 1118, 1827, 1923, 3807 |
| BspFNI | CGCG | 1 cut(s) | 3550 |
| BspHI | TCATGA | 1 cut(s) | 2410 |
| BspLI | GGNNCC | 8 cut(s) | 960, 1526, 1709, 1998, 2044, 2469, 2503, 3133 |
| BspMAI | CTGCAG | 5 cut(s) | 747, 802, 2276, 2710, 3913 |
| BspMI | ACCTGC | 3 cut(s) | 1499, 2680, 3584 |
| BspOI | GCTAGC | 3 cut(s) | 1074, 2876, 2951 |
| BspPI | GGATC | 8 cut(s) | 910, 1130, 1789, 2037, 2050, 3126, 3139, 3716 |
| BspQI | GCTCTTC | 2 cut(s) | 399, 3643 |
| BspT107I | GGYRCC | 1 cut(s) | 1524 |
| BspTNI | GGTCTC | 5 cut(s) | 221, 282, 520, 2393, 2646 |
| BsrBI | CCGCTC | 1 cut(s) | 22 |
| BsrDI | GCAATG | 4 cut(s) | 1545, 1982, 2172, 3576 |
| BsrFI | RCCGGY | 2 cut(s) | 3268, 3827 |
| BsrGI | TGTACA | 1 cut(s) | 2313 |
| BsrI | ACTGG | 9 cut(s) | 450, 859, 1631, 1900, 2394, 2450, 2507, 2647, 2735 |
| BssAI | RCCGGY | 2 cut(s) | 3268, 3827 |
| BssMI | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| BssSI | CACGAG | 1 cut(s) | 2718 |
| BssT1I | CCWWGG | 9 cut(s) | 54, 87, 1200, 1357, 1646, 2038, 2611, 2952, 3402 |
| Bst2BI | CACGAG | 1 cut(s) | 2718 |
| Bst2UI | CCWGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| Bst4CI | ACNGT | 6 cut(s) | 756, 1960, 1969, 2854, 2963, 3482 |
| Bst6I | CTCTTC | 6 cut(s) | 234, 399, 1722, 3513, 3643, 3876 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1415, 3317 |
| BstAUI | TGTACA | 1 cut(s) | 2313 |
| BstDEI | CTNAG | 9 cut(s) | 405, 784, 906, 1105, 1212, 1814, 1931, 3104, 3815 |
| BstDSI | CCRYGG | 3 cut(s) | 87, 1646, 2611 |
| BstEII | GGTNACC | 1 cut(s) | 145 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| BstFNI | CGCG | 1 cut(s) | 3550 |
| BstH2I | RGCGCY | 2 cut(s) | 119, 874 |
| BstHHI | GCGC | 2 cut(s) | 118, 873 |
| BstKTI | GATC | 9 cut(s) | 388, 905, 1138, 1611, 1797, 1918, 2045, 3134, 3724 |
| BstMBI | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| BstMCI | CGRYCG | 1 cut(s) | 384 |
| BstNI | CCWGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| BstNSI | RCATGY | 7 cut(s) | 443, 1034, 1500, 1844, 2992, 3435, 3636 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 201 |
| BstPI | GGTNACC | 1 cut(s) | 145 |
| BstSCI | CCNGG | 8 cut(s) | 254, 1065, 1585, 2255, 2342, 2978, 3232, 3497 |
| BstSLI | GKGCMC | 4 cut(s) | 360, 1851, 3217, 3640 |
| BstUI | CGCG | 1 cut(s) | 3550 |
| BstV2I | GAAGAC | 1 cut(s) | 518 |
| BstX2I | RGATCY | 4 cut(s) | 902, 1794, 2042, 3131 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 94, 566, 881 |
| BstYI | RGATCY | 4 cut(s) | 902, 1794, 2042, 3131 |
| BtgI | CCRYGG | 3 cut(s) | 87, 1646, 2611 |
| BtrI | CACGTC | 4 cut(s) | 1172, 1820, 2560, 3786 |
| BtsI | GCAGTG | 2 cut(s) | 807, 2281 |
| BtsIMutI | CAGTG | 9 cut(s) | 443, 807, 831, 1956, 2281, 2401, 2640, 2836, 3812 |
| BveI | ACCTGC | 3 cut(s) | 1499, 2680, 3584 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1268, 1400, 2300, 2539, 2942 |
| CciI | TCATGA | 1 cut(s) | 2410 |
| CfoI | GCGC | 2 cut(s) | 118, 873 |
| Cfr10I | RCCGGY | 2 cut(s) | 3268, 3827 |
| CsiI | ACCWGGT | 1 cut(s) | 3497 |
| Csp6I | GTAC | 4 cut(s) | 1154, 1880, 2314, 3478 |
| CspAI | ACCGGT | 1 cut(s) | 3268 |
| CviQI | GTAC | 4 cut(s) | 1154, 1880, 2314, 3478 |
| DdeI | CTNAG | 9 cut(s) | 405, 784, 906, 1105, 1212, 1814, 1931, 3104, 3815 |
| DpnI | GATC | 9 cut(s) | 387, 904, 1137, 1610, 1796, 1917, 2044, 3133, 3723 |
| DpnII | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| DraI | TTTAAA | 1 cut(s) | 2905 |
| DraIII | CACNNNGTG | 3 cut(s) | 1855, 2030, 3428 |
| EaeI | YGGCCR | 3 cut(s) | 51, 645, 3825 |
| Eam1104I | CTCTTC | 6 cut(s) | 234, 399, 1722, 3513, 3643, 3876 |
| EarI | CTCTTC | 6 cut(s) | 234, 399, 1722, 3513, 3643, 3876 |
| EciI | GGCGGA | 1 cut(s) | 3883 |
| Eco130I | CCWWGG | 9 cut(s) | 54, 87, 1200, 1357, 1646, 2038, 2611, 2952, 3402 |
| Eco24I | GRGCYC | 1 cut(s) | 3016 |
| Eco31I | GGTCTC | 5 cut(s) | 221, 282, 520, 2393, 2646 |
| Eco47I | GGWCC | 7 cut(s) | 338, 941, 1707, 1898, 1996, 2035, 3466 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco88I | CYCGRG | 4 cut(s) | 1163, 2585, 2628, 3527 |
| Eco91I | GGTNACC | 1 cut(s) | 145 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1148, 1707, 2035, 2467 |
| EcoO65I | GGTNACC | 1 cut(s) | 145 |
| EcoRI | GAATTC | 4 cut(s) | 634, 793, 1240, 3367 |
| EcoRII | CCWGG | 8 cut(s) | 254, 1065, 1585, 2255, 2342, 2978, 3232, 3497 |
| EcoT14I | CCWWGG | 9 cut(s) | 54, 87, 1200, 1357, 1646, 2038, 2611, 2952, 3402 |
| EcoT22I | ATGCAT | 2 cut(s) | 328, 1471 |
| EcoT38I | GRGCYC | 1 cut(s) | 3016 |
| ErhI | CCWWGG | 9 cut(s) | 54, 87, 1200, 1357, 1646, 2038, 2611, 2952, 3402 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 523, 555, 2796, 2828 |
| FaqI | GGGAC | 4 cut(s) | 1181, 1982, 2570, 2645 |
| FauI | CCCGC | 1 cut(s) | 18 |
| FauNDI | CATATG | 2 cut(s) | 1920, 3672 |
| FbaI | TGATCA | 1 cut(s) | 1915 |
| FriOI | GRGCYC | 1 cut(s) | 3016 |
| GlaI | GCGC | 2 cut(s) | 117, 872 |
| GsaI | CCCAGC | 5 cut(s) | 123, 662, 1715, 2946, 3100 |
| GsuI | CTGGAG | 2 cut(s) | 333, 2377 |
| HaeII | RGCGCY | 2 cut(s) | 119, 874 |
| HapII | CCGG | 4 cut(s) | 163, 3269, 3460, 3828 |
| HhaI | GCGC | 2 cut(s) | 118, 873 |
| Hin6I | GCGC | 2 cut(s) | 116, 871 |
| HinP1I | GCGC | 2 cut(s) | 116, 871 |
| HincII | GTYRAC | 1 cut(s) | 1653 |
| HindII | GTYRAC | 1 cut(s) | 1653 |
| HindIII | AAGCTT | 5 cut(s) | 288, 684, 1539, 1862, 1950 |
| HpaII | CCGG | 4 cut(s) | 163, 3269, 3460, 3828 |
| Hpy166II | GTNNAC | 6 cut(s) | 709, 1653, 1849, 2098, 3638, 3772 |
| Hpy188I | TCNGA | 9 cut(s) | 406, 787, 909, 1402, 1817, 2302, 2535, 2797, 3783 |
| Hpy8I | GTNNAC | 6 cut(s) | 709, 1653, 1849, 2098, 3638, 3772 |
| Hpy99I | CGWCG | 1 cut(s) | 3787 |
| HpyCH4III | ACNGT | 6 cut(s) | 756, 1960, 1969, 2854, 2963, 3482 |
| HpyCH4IV | ACGT | 5 cut(s) | 1132, 1171, 1819, 2559, 3785 |
| HpyF3I | CTNAG | 9 cut(s) | 405, 784, 906, 1105, 1212, 1814, 1931, 3104, 3815 |
| HpySE526I | ACGT | 5 cut(s) | 1132, 1171, 1819, 2559, 3785 |
| HspAI | GCGC | 2 cut(s) | 116, 871 |
| Ksp22I | TGATCA | 1 cut(s) | 1915 |
| Kzo9I | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| LguI | GCTCTTC | 2 cut(s) | 399, 3643 |
| LmnI | GCTCC | 9 cut(s) | 19, 34, 352, 1056, 1667, 2189, 2507, 3105, 3784 |
| MabI | ACCWGGT | 1 cut(s) | 3497 |
| MaeII | ACGT | 5 cut(s) | 1132, 1171, 1819, 2559, 3785 |
| MalI | GATC | 9 cut(s) | 387, 904, 1137, 1610, 1796, 1917, 2044, 3133, 3723 |
| MbiI | CCGCTC | 1 cut(s) | 22 |
| MboI | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| MfeI | CAATTG | 4 cut(s) | 342, 1206, 2994, 3600 |
| MflI | RGATCY | 4 cut(s) | 902, 1794, 2042, 3131 |
| MhlI | GDGCHC | 6 cut(s) | 360, 1851, 2281, 3016, 3217, 3640 |
| MlsI | TGGCCA | 1 cut(s) | 647 |
| MluNI | TGGCCA | 1 cut(s) | 647 |
| MlyI | GAGTC | 6 cut(s) | 849, 1175, 2096, 2330, 2801, 3347 |
| MmeI | TCCRAC | 4 cut(s) | 1476, 2544, 3518, 3806 |
| Mox20I | TGGCCA | 1 cut(s) | 647 |
| Mph1103I | ATGCAT | 2 cut(s) | 328, 1471 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2571, 2928, 3489 |
| MscI | TGGCCA | 1 cut(s) | 647 |
| MslI | CAYNNNNRTG | 5 cut(s) | 564, 653, 884, 2286, 3852 |
| Msp20I | TGGCCA | 1 cut(s) | 647 |
| MspA1I | CMGCKG | 3 cut(s) | 1485, 1787, 3030 |
| MspI | CCGG | 4 cut(s) | 163, 3269, 3460, 3828 |
| MspR9I | CCNGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| MunI | CAATTG | 4 cut(s) | 342, 1206, 2994, 3600 |
| MvaI | CCWGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| MvnI | CGCG | 1 cut(s) | 3550 |
| NcoI | CCATGG | 3 cut(s) | 87, 1646, 2611 |
| NdeI | CATATG | 2 cut(s) | 1920, 3672 |
| NdeII | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| NheI | GCTAGC | 3 cut(s) | 1070, 2872, 2947 |
| NlaIV | GGNNCC | 8 cut(s) | 960, 1526, 1709, 1998, 2044, 2469, 2503, 3133 |
| NmuCI | GTSAC | 9 cut(s) | 40, 145, 554, 1167, 1514, 1641, 1764, 1904, 2713 |
| NsiI | ATGCAT | 2 cut(s) | 328, 1471 |
| NspI | RCATGY | 7 cut(s) | 443, 1034, 1500, 1844, 2992, 3435, 3636 |
| PaeI | GCATGC | 1 cut(s) | 2992 |
| PaeR7I | CTCGAG | 2 cut(s) | 1163, 2585 |
| PagI | TCATGA | 1 cut(s) | 2410 |
| PaqCI | CACCTGC | 1 cut(s) | 1499 |
| PciI | ACATGT | 2 cut(s) | 1496, 1840 |
| PciSI | GCTCTTC | 2 cut(s) | 399, 3643 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2571, 2928, 3489 |
| PflFI | GACNNNGTC | 1 cut(s) | 1902 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 106, 2498 |
| PinAI | ACCGGT | 1 cut(s) | 3268 |
| PleI | GAGTC | 6 cut(s) | 848, 1174, 2095, 2329, 2800, 3347 |
| PpsI | GAGTC | 6 cut(s) | 848, 1174, 2095, 2329, 2800, 3347 |
| PpuMI | RGGWCCY | 2 cut(s) | 1707, 2035 |
| PscI | ACATGT | 2 cut(s) | 1496, 1840 |
| PshAI | GACNNNNGTC | 1 cut(s) | 201 |
| PshBI | ATTAAT | 2 cut(s) | 1023, 3764 |
| PsiI | TTATAA | 1 cut(s) | 1691 |
| Psp5II | RGGWCCY | 2 cut(s) | 1707, 2035 |
| Psp6I | CCWGG | 8 cut(s) | 254, 1065, 1585, 2255, 2342, 2978, 3232, 3497 |
| PspEI | GGTNACC | 1 cut(s) | 145 |
| PspFI | CCCAGC | 5 cut(s) | 119, 658, 1711, 2942, 3096 |
| PspGI | CCWGG | 8 cut(s) | 254, 1065, 1585, 2255, 2342, 2978, 3232, 3497 |
| PspN4I | GGNNCC | 8 cut(s) | 960, 1526, 1709, 1998, 2044, 2469, 2503, 3133 |
| PspPPI | RGGWCCY | 2 cut(s) | 1707, 2035 |
| PstI | CTGCAG | 5 cut(s) | 747, 802, 2276, 2710, 3913 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1268, 1400, 2300, 2539, 2942 |
| PsuI | RGATCY | 4 cut(s) | 902, 1794, 2042, 3131 |
| PsyI | GACNNNGTC | 1 cut(s) | 1902 |
| PvuII | CAGCTG | 2 cut(s) | 1485, 1787 |
| RsaI | GTAC | 4 cut(s) | 1155, 1881, 2315, 3479 |
| RsaNI | GTAC | 4 cut(s) | 1154, 1880, 2314, 3478 |
| RseI | CAYNNNNRTG | 5 cut(s) | 564, 653, 884, 2286, 3852 |
| SapI | GCTCTTC | 2 cut(s) | 399, 3643 |
| Sau3AI | GATC | 9 cut(s) | 385, 902, 1135, 1608, 1794, 1915, 2042, 3131, 3721 |
| SchI | GAGTC | 6 cut(s) | 849, 1175, 2096, 2330, 2801, 3347 |
| ScrFI | CCNGG | 8 cut(s) | 256, 1067, 1587, 2257, 2344, 2980, 3234, 3499 |
| SduI | GDGCHC | 6 cut(s) | 360, 1851, 2281, 3016, 3217, 3640 |
| SexAI | ACCWGGT | 1 cut(s) | 3497 |
| Sfr274I | CTCGAG | 2 cut(s) | 1163, 2585 |
| SinI | GGWCC | 7 cut(s) | 338, 941, 1707, 1898, 1996, 2035, 3466 |
| SlaI | CTCGAG | 2 cut(s) | 1163, 2585 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 564, 653, 884, 2286, 3852 |
| SmlI | CTYRAG | 6 cut(s) | 305, 1163, 2162, 2585, 2647, 2909 |
| SmoI | CTYRAG | 6 cut(s) | 305, 1163, 2162, 2585, 2647, 2909 |
| SpeI | ACTAGT | 1 cut(s) | 3916 |
| SphI | GCATGC | 1 cut(s) | 2992 |
| StyD4I | CCNGG | 8 cut(s) | 254, 1065, 1585, 2255, 2342, 2978, 3232, 3497 |
| StyI | CCWWGG | 9 cut(s) | 54, 87, 1200, 1357, 1646, 2038, 2611, 2952, 3402 |
| TaaI | ACNGT | 6 cut(s) | 756, 1960, 1969, 2854, 2963, 3482 |
| TaiI | ACGT | 5 cut(s) | 1135, 1174, 1822, 2562, 3788 |
| TaqI | TCGA | 8 cut(s) | 12, 195, 384, 520, 1164, 1563, 2586, 3371 |
| TaqII | GACCGA | 1 cut(s) | 370 |
| TatI | WGTACW | 1 cut(s) | 2313 |
| TauI | GCSGC | 5 cut(s) | 25, 53, 319, 3030, 3419 |
| TscAI | CASTG | 9 cut(s) | 450, 807, 831, 1963, 2281, 2401, 2647, 2836, 3819 |
| TseFI | GTSAC | 9 cut(s) | 40, 145, 554, 1167, 1514, 1641, 1764, 1904, 2713 |
| Tsp45I | GTSAC | 9 cut(s) | 40, 145, 554, 1167, 1514, 1641, 1764, 1904, 2713 |
| TspGWI | ACGGA | 3 cut(s) | 59, 1299, 3532 |
| TspRI | CASTG | 9 cut(s) | 450, 807, 831, 1963, 2281, 2401, 2647, 2836, 3819 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1902 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 106, 2498 |
| VneI | GTGCAC | 2 cut(s) | 1847, 3636 |
| VpaK11BI | GGWCC | 7 cut(s) | 338, 941, 1707, 1898, 1996, 2035, 3466 |
| VspI | ATTAAT | 2 cut(s) | 1023, 3764 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| XbaI | TCTAGA | 1 cut(s) | 3644 |
| XceI | RCATGY | 7 cut(s) | 443, 1034, 1500, 1844, 2992, 3435, 3636 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 127, 655 |
| XhoI | CTCGAG | 2 cut(s) | 1163, 2585 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2571, 2928, 3489 |
| Zsp2I | ATGCAT | 2 cut(s) | 328, 1471 |