Rh3CG099900

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
7876518 .. 7882835
6318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG099900.1

Sequence Viewer

Length: 3945 bp
ATGGGTAGTGTCGAATTGGAGCGGCGGGTGGTGGAGCTTGTGACGGATGCGGCGAAGGGGAAGGAGGAGAGTGTGGTGATTTGGGCAATGGAATTGGGCCAATGTGTGGAGGCAGCGCCCAGCATTGAGTTGGGGGAGGTTGTCGTGACCCAACTCTGTTTCCGGCACAACAAACCTTGTCTCTGGAAATTTCTCGACTTTTGTCTCTCGTCGGGTCTCCTCTCTCCTCTTCATGTCCTCTCTCTCCTCTCTGCCAGGGTGATTCCTCAACGGCGGTCTCAACCAGAAGCTTATAGGCTGTTTCTTGAGCTTTTGCGGCGTTATGCATTTTCATTTGGTCCAGTTGCTCCAGATGGGCAGAAAGAAAAGATAGCAGAATCGGTCGATCTTGCTCTTCAGCTTTCTGAGACATACAAGGTTCGTGTTGTGGAGTTTGGACATGCACTGGTCTTGTTCTTTTTCAGTATCATCATCAGCTTAATTGATAGCACATTGGATGATTGGGGGTTGAAGACATCTCGAAAGAGACCAAGATTAGCTTTTGGAGGTTCAAGTGACCATGATGGTGGGATAGATTCTATAGGAAATGAGAAGTTTAGAAGTAACGAACATCAGGAAAGGATTAGGACAATGAATTCTTTTTTGGCCATAGAGGTGCTGGGAAAGCTAACAGAAAGCAGAAAAGCTTTGGTTCTGCTTCGCCTTGTTCACTTGAATATGCCTGAAAAATTCAATGGCCTCCTGCAGAGGCTACGGTTTCTTGAAGCTCGTCAATTTGCATCCTCAGATTTGAATTCTGCAGTGCAACTATTGGCAAGATTGTCAGTGCAACTACAGAGAGTCTTGGGCTTTGAATACCAGTTGAATAAGCGCCAGCTCATTGGAGTGCTTCTTGATATTGGATCTCAGAAGCCAACATTTCACTTTAACTCTGGATTTGGTCCTTCTACTTGTTGGGTTCCTTTAGATATATACATGGAGAATACAATGGATGGCAAACAGCTTTCTATTAAATCAGCTATTAATATACATGCAGAAGGAATTATGAAGCTCCAAGTAATTAACCAGGCTAGCTGGCAAGAAACCTTCCTAGCACTCTGGCTCTCAGCCCTTCGGCTAGTGCAACGAGAACGTGATCCTCTTGAAGGCCCTGTACCACATCTCGAGTCACGTCTTTGTGTCCTTTTGTCTATTGTCCCCTTGGCAATTGCTAAGGTTTTGGAGGATGAGGCCAACTTGAATTCCTCATCTCTTAAAGATACAGCTTCCGGGAATGTGGAGAACGGAGATGGACATGAAATGAATAGCAAAGAAAATACTTCAAGGAAACATGGACTGATTTCTTCTCTCAAAGTCCTTGGGAACTTCTCTGGACTCCTATGCCCTCCTTCATCAGTCTCTGATTCAGCAAATAGTGCAGCAACAAAAGCAGCTCGCTTTATACATAATTCCAACAATGAAAAGGACGCATCAGGTGGAGGCAGCTGTGGTGATACTTGTATAAAAGCAGGGGGTGACATGAGGCACCTTATTGTGGAAGCTTGCATTGCAAGAAATTTAATCGACACATCAGCATATTTTTGGCCTGGATTTGTGTCTGCATCCATGATCTCACAATTGAATACATCACCGGTTCAAAAGTCACCATGGTCAACATTCATGGAAGGAGCACCATTGAGGGATTCCCTTATAAACTCTCTTATCATGACCCCAGCTTCAAGTTTAGAAGAGATAGAGAAGTTACATCATATTGCACTAAATGGGTCACAAGAGGAGAAGTCGGCAGCTGCAAAGATCCTGTGTGGTGCATCCCTCAGAAGTGGATGGAACATTCAGGAACATGTGGTGCACTTTGTGGTTAAGCTTCTTTGTCCTCCTGTACCTCCCAACTATACCGGACCAAGTCACTTAATTGATCATATGTCAATGCTGAGTGCTATCCTTTTTGAAGCTTCCACTGTTGATACAGTTCATATACTTTCATTGCATGGTATGGTCCCCGAAGTGGCAGCTTCTTTAATTCCACTATGTGAGGACCTTGGATCCCTAAAGCCTACATCAAATAACAAGTCAAGCATGGGTGATGAGTCCTCCGTTTACATGGTTTTTTCACTAGCATTTCTTTTTCTTCTTCGTCTATGGAAATTCTATAGACCACCTCTTGAGCAATACATTGCAGAGAGAGGAGGAGCAGTAGTAGGTGAGCTGACTTTGGAGTATCTTTTGATATTGCACAATAACCATGTTGCCTCTGCCTGGAATGAAACAAACAGCAGTGCGCATCAATATGAATCAGCATCTGAAAAACCGATGTACATTGATTCATATCCAAGACTACAAGCCTGGTATAGTCAAAACAAATCTTGTGTAGCTTCAACACTTTCTGGTCTCTCCAGTGGAAATCCTGTTCATGAAGTTGCTAATAAAATTTTGAGTATGATTTACTGGAAAATGACTAGAAGTAGAGCCCCATCAAGTAATTCTCCTGCACCATCAAGTGGCTCCCCTGTCGATGTTGGGGAGGATGTGAATCAGAGACTGATGCTTCCTGCTTGGGACGTGTTGGAAGCCATTCCTTTTGTTCTCGAGGCTATTTTAACTGCTTGTTCCCATGGCAGGCTTTCATCTCGGGACTTAACCACTGGCTTGAGAGACCTAGTTGAATTTCTACCTGCTTCTCTTGCTACTATTATCAGTTACTTCTCTGCAGAAGTCACTCGTGGTATATGGAAACCAGTTCCTATGAATGGAACAGATTGGCCTAGTCCAGCAGTGATTCTTAAATCAGTCGAGTCTGAAATAAAAGAAATACTTGAAGCTGTTGGTGTCAGTGTTCCAAGCTGTTTCACTGATATTTCAACAGTAATGCTACCGCTTCCGCTAGCTGCTCTTGTGAGTTTGACCATTACTTTTAAACTTGAGAAAAGTGTTGAATACATTCATGCTGTTGCTGGGCTAGCCTTGGAGAACTGTGCATCGGGTTGCCCCTGGCCTAGCATGCCAATTGTAGGCTGTTTGTGGGCTCAAAAGGTTCGCCGCTGGCATCATTTCATTGTGGTATCTTGTTCTCGCTCTGTATTTACACAAAACAAAGATGCTGTTGCCCAGCTCCTAAGAAGTTGCTTCTCCTCCTTTTTTGGATCCCACCACACTTCAACCTCTTTGTTGTCCAGCCAAAGCAGCGTGAGTGGTCTTTTGGGTTATACTATAACAGGCTGTGGTGCCCATCCTTCTGTAGCACCTGGATTTCTATACCTTCGGTCTTGCAGGACAATACCGGTTGTCCAATATGTCAATAATGTGATTGTAGAGCTTGTAGCAGAGTATGCTTTCAAATTAGCCTCTAAATGGGCAAGCACAGACTCCCCTCGCTTGAATTCTACCCAAGCATCATTGTCTCTGGCTATTTCCAAGGCAAAGGAGGCGGCAACACTTGGTGCATGTCTCTTATGTGTTGCAGGGGGTGTCCGGCTGGTCCAAGAATTGTACCGTGAAACCATTCCAACCTGGTTACTCTCACCAAAGGAAGAGAAGCTCGGGGAGGCAAGTTCTGTATCGCGTGTAATGGAGGGGTATGCAATGGCATATCTGGTGATTCTGGCAGGTTCAATTGAATGGGGCTTTGGAGACAAGCTGCCAGCATGTGCACTCTCTAGAAGAGCCAGCATTGTTGGGATTCATTTGGACTTTCTGGCAGGCGTTTTAGAGGGAAACATATCACTTGGTTGTGATCCTGCTACATGGAAATCTTATGTTTCTTGTCTGGTGGGATTAATGGTAAACTTTGCTCCGACGTGGATTAAAGATGTGAAGGTGGAGACACTGAGGAAATTGGCCGGTGGATTGAGGGGGTGGCATGAATGTGAGTTGGCCCTTTCTCTTCTTGAAAGAGGTGGAGCTTCCGCCATAGGGTCTGCTGCAGAACTAGTGAATGTATTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1314

Amino Acids

143.51

Weight (kDa)

6.47

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1691
Acc16I TGCGCA 1 cut(s) 2280
Acc36I ACCTGC 2 cut(s) 2680, 3593
AccB1I GGYRCC 2 cut(s) 1524, 3221
AccB7I CCANNNNNTGG 2 cut(s) 106, 2498
AccBSI CCGCTC 1 cut(s) 22
AccII CGCG 1 cut(s) 3559
AclWI GGATC 8 cut(s) 910, 1130, 1789, 2037, 2050, 3135, 3148, 3725
AcoI YGGCCR 2 cut(s) 645, 3834
AcuI CTGAAG 1 cut(s) 380
AdeI CACNNNGTG 3 cut(s) 1855, 2030, 3437
AfaI GTAC 4 cut(s) 1155, 1881, 2315, 3488
AflIII ACRYGT 2 cut(s) 1840, 2559
AgeI ACCGGT 2 cut(s) 1630, 3277
AhlI ACTAGT 1 cut(s) 3925
AjiI CACGTC 3 cut(s) 1172, 2560, 3795
AjnI CCWGG 8 cut(s) 254, 1065, 1585, 2255, 2342, 2987, 3241, 3506
AjuI GAANNNNNNNTTGG 4 cut(s) 626, 658, 3606, 3638
AloI GAACNNNNNNTCC 2 cut(s) 2391, 2423
Alw21I GWGCWC 3 cut(s) 1672, 1851, 3649
Alw44I GTGCAC 2 cut(s) 1847, 3645
AlwI GGATC 8 cut(s) 910, 1130, 1789, 2037, 2050, 3135, 3148, 3725
AlwNI CAGNNNCTG 3 cut(s) 1400, 2300, 2539
Ama87I CYCGRG 4 cut(s) 1163, 2585, 2628, 3536
ApaLI GTGCAC 2 cut(s) 1847, 3645
ArsI GACNNNNNNTTYG 2 cut(s) 2054, 2086
AseI ATTAAT 2 cut(s) 1023, 3773
AsiGI ACCGGT 2 cut(s) 1630, 3277
Asp700I GAANNNNTTC 3 cut(s) 2571, 2937, 3498
AspLEI GCGC 3 cut(s) 118, 873, 2281
AspS9I GGNCC 9 cut(s) 97, 338, 941, 1148, 1898, 1996, 2035, 3475, 3871
AsuC2I CCSGG 1 cut(s) 1270
AsuNHI GCTAGC 3 cut(s) 1070, 2881, 2956
AvaI CYCGRG 4 cut(s) 1163, 2585, 2628, 3536
AvaII GGWCC 6 cut(s) 338, 941, 1898, 1996, 2035, 3475
BaeGI GKGCMC 3 cut(s) 1851, 3226, 3649
BalI TGGCCA 1 cut(s) 647
BamHI GGATCC 2 cut(s) 2042, 3140
BanI GGYRCC 2 cut(s) 1524, 3221
BanII GRGCYC 2 cut(s) 2470, 3025
BarI GAAGNNNNNNTAC 2 cut(s) 1137, 1169
BauI CACGAG 1 cut(s) 2718
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 3 cut(s) 1672, 1851, 3649
BccI CCATC 8 cut(s) 347, 557, 986, 1283, 1818, 2479, 2500, 3234
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 8 cut(s) 256, 1067, 1587, 2257, 2344, 2989, 3243, 3508
BclI TGATCA 1 cut(s) 1915
BcnI CCSGG 1 cut(s) 1270
BcuI ACTAGT 1 cut(s) 3925
BfmI CTRYAG 8 cut(s) 579, 743, 798, 833, 2149, 2706, 3234, 3918
BfoI RGCGCY 2 cut(s) 119, 874
BfuAI ACCTGC 2 cut(s) 2680, 3593
Bme1390I CCNGG 9 cut(s) 256, 1067, 1270, 1587, 2257, 2344, 2989, 3243, 3508
Bme18I GGWCC 6 cut(s) 338, 941, 1898, 1996, 2035, 3475
BmeT110I CYCGRG 4 cut(s) 1163, 2585, 2628, 3536
BmgBI CACGTC 3 cut(s) 1172, 2560, 3795
BmgT120I GGNCC 9 cut(s) 97, 338, 941, 1148, 1898, 1996, 2035, 3475, 3871
BmiI GGNNCC 7 cut(s) 960, 1526, 1998, 2044, 2503, 3142, 3223
BmrFI CCNGG 9 cut(s) 256, 1067, 1270, 1587, 2257, 2344, 2989, 3243, 3508
BmtI GCTAGC 3 cut(s) 1074, 2885, 2960
BoxI GACNNNNGTC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 333, 2377
Bpu10I CCTNAGC 1 cut(s) 1212
BpuEI CTTGAG 4 cut(s) 326, 2183, 2668, 2939
BpuMI CCSGG 1 cut(s) 1270
BsaBI GATNNNNATC 2 cut(s) 2325, 2529
BsaI GGTCTC 5 cut(s) 221, 282, 520, 2393, 2646
BsaJI CCNNGG 9 cut(s) 255, 1200, 1357, 1646, 2038, 2611, 2961, 2987, 3411
BsaWI WCCGGW 3 cut(s) 1630, 1895, 3277
BsaXI ACNNNNNCTCC 4 cut(s) 2178, 2181, 2208, 2211
Bse118I RCCGGY 3 cut(s) 1630, 3277, 3836
Bse1I ACTGG 7 cut(s) 341, 450, 859, 2394, 2450, 2647, 2735
Bse3DI GCAATG 5 cut(s) 93, 1545, 1982, 2172, 3585
Bse8I GATNNNNATC 2 cut(s) 2325, 2529
BseBI CCWGG 8 cut(s) 256, 1067, 1587, 2257, 2344, 2989, 3243, 3508
BseDI CCNNGG 9 cut(s) 255, 1200, 1357, 1646, 2038, 2611, 2961, 2987, 3411
BseJI GATNNNNATC 2 cut(s) 2325, 2529
BseMI GCAATG 5 cut(s) 93, 1545, 1982, 2172, 3585
BseMII CTCAG 7 cut(s) 396, 798, 920, 1119, 1828, 1922, 3815
BseNI ACTGG 7 cut(s) 341, 450, 859, 2394, 2450, 2647, 2735
BseRI GAGGAG 8 cut(s) 80, 209, 216, 236, 1787, 2199, 2202, 3118
BseSI GKGCMC 3 cut(s) 1851, 3226, 3649
BseYI CCCAGC 5 cut(s) 119, 658, 1711, 2951, 3105
BsgI GTGCAG 2 cut(s) 1437, 2472
Bsh1236I CGCG 1 cut(s) 3559
Bsh1285I CGRYCG 1 cut(s) 384
BshNI GGYRCC 2 cut(s) 1524, 3221
BshTI ACCGGT 2 cut(s) 1630, 3277
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 3 cut(s) 1672, 1851, 3649
BsiHKCI CYCGRG 4 cut(s) 1163, 2585, 2628, 3536
BsiSI CCGG 7 cut(s) 163, 1269, 1631, 1896, 3278, 3469, 3837
BslFI GGGAC 4 cut(s) 1181, 1982, 2570, 2645
BsmFI GGGAC 4 cut(s) 1181, 1982, 2570, 2645
Bso31I GGTCTC 5 cut(s) 221, 282, 520, 2393, 2646
BsoBI CYCGRG 4 cut(s) 1163, 2585, 2628, 3536
Bsp1286I GDGCHC 6 cut(s) 1672, 1851, 2470, 3025, 3226, 3649
Bsp1407I TGTACA 1 cut(s) 2313
Bsp143I GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
Bsp19I CCATGG 2 cut(s) 1646, 2611
BspCNI CTCAG 7 cut(s) 397, 797, 919, 1118, 1827, 1923, 3816
BspFNI CGCG 1 cut(s) 3559
BspHI TCATGA 2 cut(s) 1704, 2410
BspLI GGNNCC 7 cut(s) 960, 1526, 1998, 2044, 2503, 3142, 3223
BspMAI CTGCAG 4 cut(s) 747, 802, 2710, 3922
BspMI ACCTGC 2 cut(s) 2680, 3593
BspOI GCTAGC 3 cut(s) 1074, 2885, 2960
BspPI GGATC 8 cut(s) 910, 1130, 1789, 2037, 2050, 3135, 3148, 3725
BspQI GCTCTTC 2 cut(s) 399, 3652
BspT107I GGYRCC 2 cut(s) 1524, 3221
BspTNI GGTCTC 5 cut(s) 221, 282, 520, 2393, 2646
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 5 cut(s) 93, 1545, 1982, 2172, 3585
BsrFI RCCGGY 3 cut(s) 1630, 3277, 3836
BsrGI TGTACA 1 cut(s) 2313
BsrI ACTGG 7 cut(s) 341, 450, 859, 2394, 2450, 2647, 2735
BssAI RCCGGY 3 cut(s) 1630, 3277, 3836
BssECI CCNNGG 9 cut(s) 255, 1200, 1357, 1646, 2038, 2611, 2961, 2987, 3411
BssMI GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
BssSI CACGAG 1 cut(s) 2718
BssT1I CCWWGG 7 cut(s) 1200, 1357, 1646, 2038, 2611, 2961, 3411
Bst2BI CACGAG 1 cut(s) 2718
Bst2UI CCWGG 8 cut(s) 256, 1067, 1587, 2257, 2344, 2989, 3243, 3508
Bst4CI ACNGT 6 cut(s) 756, 1960, 1969, 2863, 2972, 3491
Bst6I CTCTTC 6 cut(s) 234, 399, 1722, 3522, 3652, 3885
BstAPI GCANNNNNTGC 2 cut(s) 1415, 3326
BstAUI TGTACA 1 cut(s) 2313
BstDEI CTNAG 9 cut(s) 405, 784, 906, 1105, 1212, 1814, 1931, 3113, 3824
BstDSI CCRYGG 2 cut(s) 1646, 2611
BstENI CCTNNNNNAGG 1 cut(s) 1143
BstFNI CGCG 1 cut(s) 3559
BstH2I RGCGCY 2 cut(s) 119, 874
BstHHI GCGC 3 cut(s) 118, 873, 2281
BstKTI GATC 9 cut(s) 388, 905, 1138, 1611, 1797, 1918, 2045, 3143, 3733
BstMBI GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
BstMCI CGRYCG 1 cut(s) 384
BstNI CCWGG 8 cut(s) 256, 1067, 1587, 2257, 2344, 2989, 3243, 3508
BstNSI RCATGY 6 cut(s) 443, 1034, 1844, 3001, 3444, 3645
BstPAI GACNNNNGTC 1 cut(s) 201
BstSCI CCNGG 9 cut(s) 254, 1065, 1268, 1585, 2255, 2342, 2987, 3241, 3506
BstSFI CTRYAG 8 cut(s) 579, 743, 798, 833, 2149, 2706, 3234, 3918
BstSLI GKGCMC 3 cut(s) 1851, 3226, 3649
BstUI CGCG 1 cut(s) 3559
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 4 cut(s) 902, 1794, 2042, 3140
BstXI CCANNNNNNTGG 2 cut(s) 566, 881
BstYI RGATCY 4 cut(s) 902, 1794, 2042, 3140
BtgI CCRYGG 2 cut(s) 1646, 2611
BtrI CACGTC 3 cut(s) 1172, 2560, 3795
BtsI GCAGTG 3 cut(s) 807, 2281, 2778
BveI ACCTGC 2 cut(s) 2680, 3593
CaiI CAGNNNCTG 3 cut(s) 1400, 2300, 2539
CciI TCATGA 2 cut(s) 1704, 2410
CfoI GCGC 3 cut(s) 118, 873, 2281
Cfr10I RCCGGY 3 cut(s) 1630, 3277, 3836
Cfr13I GGNCC 9 cut(s) 97, 338, 941, 1148, 1898, 1996, 2035, 3475, 3871
CseI GACGC 1 cut(s) 1475
CsiI ACCWGGT 1 cut(s) 3506
Csp6I GTAC 4 cut(s) 1154, 1880, 2314, 3487
CspAI ACCGGT 2 cut(s) 1630, 3277
CviQI GTAC 4 cut(s) 1154, 1880, 2314, 3487
DdeI CTNAG 9 cut(s) 405, 784, 906, 1105, 1212, 1814, 1931, 3113, 3824
DpnI GATC 9 cut(s) 387, 904, 1137, 1610, 1796, 1917, 2044, 3142, 3732
DpnII GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
DraI TTTAAA 1 cut(s) 2914
DraIII CACNNNGTG 3 cut(s) 1855, 2030, 3437
EaeI YGGCCR 2 cut(s) 645, 3834
Eam1104I CTCTTC 6 cut(s) 234, 399, 1722, 3522, 3652, 3885
EarI CTCTTC 6 cut(s) 234, 399, 1722, 3522, 3652, 3885
EciI GGCGGA 1 cut(s) 3892
Eco130I CCWWGG 7 cut(s) 1200, 1357, 1646, 2038, 2611, 2961, 3411
Eco24I GRGCYC 2 cut(s) 2470, 3025
Eco31I GGTCTC 5 cut(s) 221, 282, 520, 2393, 2646
Eco47I GGWCC 6 cut(s) 338, 941, 1898, 1996, 2035, 3475
Eco57I CTGAAG 1 cut(s) 380
Eco88I CYCGRG 4 cut(s) 1163, 2585, 2628, 3536
EcoNI CCTNNNNNAGG 1 cut(s) 1143
EcoO109I RGGNCCY 2 cut(s) 1148, 2035
EcoRI GAATTC 4 cut(s) 634, 793, 1240, 3376
EcoRII CCWGG 8 cut(s) 254, 1065, 1585, 2255, 2342, 2987, 3241, 3506
EcoT14I CCWWGG 7 cut(s) 1200, 1357, 1646, 2038, 2611, 2961, 3411
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 2470, 3025
ErhI CCWWGG 7 cut(s) 1200, 1357, 1646, 2038, 2611, 2961, 3411
FalI AAGNNNNNCTT 4 cut(s) 523, 555, 2796, 2828
FaqI GGGAC 4 cut(s) 1181, 1982, 2570, 2645
FauI CCCGC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 1920
FbaI TGATCA 1 cut(s) 1915
FriOI GRGCYC 2 cut(s) 2470, 3025
FspAI RTGCGCAY 1 cut(s) 2280
FspI TGCGCA 1 cut(s) 2280
GlaI GCGC 3 cut(s) 117, 872, 2280
GsaI CCCAGC 5 cut(s) 123, 662, 1715, 2955, 3109
GsuI CTGGAG 2 cut(s) 333, 2377
HaeII RGCGCY 2 cut(s) 119, 874
HapII CCGG 7 cut(s) 163, 1269, 1631, 1896, 3278, 3469, 3837
HgaI GACGC 1 cut(s) 1475
HhaI GCGC 3 cut(s) 118, 873, 2281
Hin6I GCGC 3 cut(s) 116, 871, 2279
HinP1I GCGC 3 cut(s) 116, 871, 2279
HincII GTYRAC 1 cut(s) 1653
HindII GTYRAC 1 cut(s) 1653
HindIII AAGCTT 5 cut(s) 288, 684, 1539, 1862, 1950
HpaII CCGG 7 cut(s) 163, 1269, 1631, 1896, 3278, 3469, 3837
Hpy166II GTNNAC 6 cut(s) 709, 1653, 1849, 2098, 3647, 3781
Hpy188I TCNGA 9 cut(s) 406, 787, 909, 1402, 1817, 2302, 2535, 2797, 3792
Hpy8I GTNNAC 6 cut(s) 709, 1653, 1849, 2098, 3647, 3781
Hpy99I CGWCG 2 cut(s) 214, 3796
HpyCH4III ACNGT 6 cut(s) 756, 1960, 1969, 2863, 2972, 3491
HpyCH4IV ACGT 4 cut(s) 1132, 1171, 2559, 3794
HpyF3I CTNAG 9 cut(s) 405, 784, 906, 1105, 1212, 1814, 1931, 3113, 3824
HpySE526I ACGT 4 cut(s) 1132, 1171, 2559, 3794
HspAI GCGC 3 cut(s) 116, 871, 2279
Ksp22I TGATCA 1 cut(s) 1915
Kzo9I GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
LguI GCTCTTC 2 cut(s) 399, 3652
MabI ACCWGGT 1 cut(s) 3506
MaeII ACGT 4 cut(s) 1132, 1171, 2559, 3794
MalI GATC 9 cut(s) 387, 904, 1137, 1610, 1796, 1917, 2044, 3142, 3732
MbiI CCGCTC 1 cut(s) 22
MboI GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
MfeI CAATTG 4 cut(s) 1206, 1616, 3003, 3609
MflI RGATCY 4 cut(s) 902, 1794, 2042, 3140
MhlI GDGCHC 6 cut(s) 1672, 1851, 2470, 3025, 3226, 3649
MlsI TGGCCA 1 cut(s) 647
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 6 cut(s) 849, 1175, 1368, 2096, 2801, 3356
MmeI TCCRAC 4 cut(s) 1476, 2544, 3527, 3815
Mox20I TGGCCA 1 cut(s) 647
Mph1103I ATGCAT 1 cut(s) 328
MroXI GAANNNNTTC 3 cut(s) 2571, 2937, 3498
MscI TGGCCA 1 cut(s) 647
MslI CAYNNNNRTG 5 cut(s) 564, 653, 884, 2286, 3861
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 3 cut(s) 1485, 1787, 3039
MspI CCGG 7 cut(s) 163, 1269, 1631, 1896, 3278, 3469, 3837
MspR9I CCNGG 9 cut(s) 256, 1067, 1270, 1587, 2257, 2344, 2989, 3243, 3508
MunI CAATTG 4 cut(s) 1206, 1616, 3003, 3609
MvaI CCWGG 8 cut(s) 256, 1067, 1587, 2257, 2344, 2989, 3243, 3508
MvnI CGCG 1 cut(s) 3559
NciI CCSGG 1 cut(s) 1270
NcoI CCATGG 2 cut(s) 1646, 2611
NdeI CATATG 1 cut(s) 1920
NdeII GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
NheI GCTAGC 3 cut(s) 1070, 2881, 2956
NlaIV GGNNCC 7 cut(s) 960, 1526, 1998, 2044, 2503, 3142, 3223
NmuCI GTSAC 9 cut(s) 40, 145, 554, 1167, 1514, 1641, 1764, 1904, 2713
NsbI TGCGCA 1 cut(s) 2280
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 6 cut(s) 443, 1034, 1844, 3001, 3444, 3645
PaeI GCATGC 1 cut(s) 3001
PaeR7I CTCGAG 2 cut(s) 1163, 2585
PagI TCATGA 2 cut(s) 1704, 2410
PciI ACATGT 1 cut(s) 1840
PciSI GCTCTTC 2 cut(s) 399, 3652
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdmI GAANNNNTTC 3 cut(s) 2571, 2937, 3498
PflFI GACNNNGTC 1 cut(s) 1902
PflMI CCANNNNNTGG 2 cut(s) 106, 2498
PfoI TCCNGGA 1 cut(s) 1268
PinAI ACCGGT 2 cut(s) 1630, 3277
PleI GAGTC 6 cut(s) 848, 1174, 1368, 2095, 2800, 3356
PpsI GAGTC 6 cut(s) 848, 1174, 1368, 2095, 2800, 3356
PpuMI RGGWCCY 1 cut(s) 2035
PscI ACATGT 1 cut(s) 1840
PshAI GACNNNNGTC 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 1023, 3773
PsiI TTATAA 1 cut(s) 1691
Psp5II RGGWCCY 1 cut(s) 2035
Psp6I CCWGG 8 cut(s) 254, 1065, 1585, 2255, 2342, 2987, 3241, 3506
PspFI CCCAGC 5 cut(s) 119, 658, 1711, 2951, 3105
PspGI CCWGG 8 cut(s) 254, 1065, 1585, 2255, 2342, 2987, 3241, 3506
PspN4I GGNNCC 7 cut(s) 960, 1526, 1998, 2044, 2503, 3142, 3223
PspPI GGNCC 9 cut(s) 97, 338, 941, 1148, 1898, 1996, 2035, 3475, 3871
PspPPI RGGWCCY 1 cut(s) 2035
PstI CTGCAG 4 cut(s) 747, 802, 2710, 3922
PstNI CAGNNNCTG 3 cut(s) 1400, 2300, 2539
PsuI RGATCY 4 cut(s) 902, 1794, 2042, 3140
PsyI GACNNNGTC 1 cut(s) 1902
PvuII CAGCTG 2 cut(s) 1485, 1787
RsaI GTAC 4 cut(s) 1155, 1881, 2315, 3488
RsaNI GTAC 4 cut(s) 1154, 1880, 2314, 3487
RseI CAYNNNNRTG 5 cut(s) 564, 653, 884, 2286, 3861
SapI GCTCTTC 2 cut(s) 399, 3652
Sau3AI GATC 9 cut(s) 385, 902, 1135, 1608, 1794, 1915, 2042, 3140, 3730
Sau96I GGNCC 9 cut(s) 97, 338, 941, 1148, 1898, 1996, 2035, 3475, 3871
SchI GAGTC 6 cut(s) 849, 1175, 1368, 2096, 2801, 3356
ScrFI CCNGG 9 cut(s) 256, 1067, 1270, 1587, 2257, 2344, 2989, 3243, 3508
SduI GDGCHC 6 cut(s) 1672, 1851, 2470, 3025, 3226, 3649
SexAI ACCWGGT 1 cut(s) 3506
SfcI CTRYAG 8 cut(s) 579, 743, 798, 833, 2149, 2706, 3234, 3918
Sfr274I CTCGAG 2 cut(s) 1163, 2585
SinI GGWCC 6 cut(s) 338, 941, 1898, 1996, 2035, 3475
SlaI CTCGAG 2 cut(s) 1163, 2585
SmiMI CAYNNNNRTG 5 cut(s) 564, 653, 884, 2286, 3861
SmlI CTYRAG 6 cut(s) 305, 1163, 2162, 2585, 2647, 2918
SmoI CTYRAG 6 cut(s) 305, 1163, 2162, 2585, 2647, 2918
SpeI ACTAGT 1 cut(s) 3925
SphI GCATGC 1 cut(s) 3001
StyD4I CCNGG 9 cut(s) 254, 1065, 1268, 1585, 2255, 2342, 2987, 3241, 3506
StyI CCWWGG 7 cut(s) 1200, 1357, 1646, 2038, 2611, 2961, 3411
TaaI ACNGT 6 cut(s) 756, 1960, 1969, 2863, 2972, 3491
TaiI ACGT 4 cut(s) 1135, 1174, 2562, 3797
TaqI TCGA 9 cut(s) 12, 195, 384, 520, 1164, 1563, 2511, 2586, 2790
TaqII GACCGA 2 cut(s) 370, 3249
TatI WGTACW 1 cut(s) 2313
TauI GCSGC 5 cut(s) 25, 53, 319, 3039, 3428
TseFI GTSAC 9 cut(s) 40, 145, 554, 1167, 1514, 1641, 1764, 1904, 2713
Tsp45I GTSAC 9 cut(s) 40, 145, 554, 1167, 1514, 1641, 1764, 1904, 2713
TspGWI ACGGA 3 cut(s) 59, 1299, 2083
Tth111I GACNNNGTC 1 cut(s) 1902
Van91I CCANNNNNTGG 2 cut(s) 106, 2498
VneI GTGCAC 2 cut(s) 1847, 3645
VpaK11BI GGWCC 6 cut(s) 338, 941, 1898, 1996, 2035, 3475
VspI ATTAAT 2 cut(s) 1023, 3773
XagI CCTNNNNNAGG 1 cut(s) 1143
XbaI TCTAGA 1 cut(s) 3653
XceI RCATGY 6 cut(s) 443, 1034, 1844, 3001, 3444, 3645
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 655
XhoI CTCGAG 2 cut(s) 1163, 2585
XmnI GAANNNNTTC 3 cut(s) 2571, 2937, 3498
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.