Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023706.1

Orthogroup ID

OG0006938

Physical Location & Seq

Genomic Coordinates Reverse (-)

8583 .. 9539

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023706.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgccaattgtaggctgtttgtgggctcaaaaggttcgccgctggcatcatttcattgtggtatcatgttctcgctctgtatttacacaaaacaaagatgctgttgcccagctcctaagaagttgcttctcctccttttttggatcccaccacacttcaacctctttgttgtccagccaaagcagcgtgagtggtcttttgggttatactataacaggctgtagtgcccatccttctgtagcacccggatttctataccttcgctcctgcaggacaataccggttgtccaatatgtcaataatgtgattgtagagcttgtagcagagtatgctttcaaattagcctctaaatgggcaagcactgactcccctcgcttgaattctacccaagcatcattgtctctggctgtttctaaggcaaaggaggcggcaacacttggtgcatgtctcttatgtgttgcagggggtgtccgactggtccaagaattgtaccgtgaaaccattccaacctggttactctcatcaaaggaagagaagcttgggaaggcaagttccgtatcgcgtgtaatggagggctatgcaatggcatatctggtgattctggcaggttcaattgaatggggctttggagacaagctgccagcatgtgcactctctagaagagccagcattgttgggattcatatggactttctggcaggcgttttagagggaaacatatcacttggttgtgatcctgctacatggaaatcttatgtttcttgtctggtgggattaatggtaaactttgctccgacgtggattaaagatgtgaaggtggagacactaaggaaattggccggtggattgagggggtggcacgaatgtgagttggccctttctcttcttgaaagaggtggggcttctgccatagggtctgctgcagaactagtgaatgtattgagttcaaacttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

34.17

Weight (kDa)

8.95

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250
malus_domestica	MD04G1179600.v1.1 MD12G1194700.v1.1
prunus_persica	Prupe.6G299600_v2.0.a1 Prupe.6G299600_v2.0.a1
pyrus_communis	pycom04g15860 pycom12g18080 pycom12g18090
rosa_chinensis	RchiOBHm_Chr3g0459591
rosa_laevigata	RLG00000025076
rosa_multiflora	Rmu_co8219898.1_g000001 Rmu_sc0023410.1_g000001 Rmu_sc0023706.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420150
rosa_rugosa	Rorug03G0036600
rosa_samantha	Rh3AG095600 Rh3BG097500 Rh3CG099900 Rh3DG099200
rosa_wichuraiana	Rw0G013840 Rw0G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	955
Acc36I	ACCTGC	1 cut(s)	596
AccII	CGCG	1 cut(s)	562
AciI	CCGC	2 cut(s)	40, 428
AclWI	GGATC	3 cut(s)	138, 151, 728
AcoI	YGGCCR	1 cut(s)	837
AcsI	RAATTY	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	11, 351
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	7 cut(s)	159, 337, 379, 612, 617, 890, 948
AhlI	ACTAGT	1 cut(s)	928
AjiI	CACGTC	1 cut(s)	798
AjnI	CCWGG	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	4 cut(s)	522, 554, 609, 641
AleI	CACNNNNGTG	1 cut(s)	864
AloI	GAACNNNNNNTCC	2 cut(s)	535, 567
AluBI	AGCT	4 cut(s)	112, 316, 538, 637
AluI	AGCT	4 cut(s)	112, 316, 538, 637
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	4 cut(s)	405, 452, 624, 815
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	3 cut(s)	138, 151, 728
AoxI	GGCC	2 cut(s)	837, 873
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	3 cut(s)	183, 637, 920
ApoI	RAATTY	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	776
AsiGI	ACCGGT	1 cut(s)	280
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	478, 874
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	2 cut(s)	229, 652
BamHI	GGATCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	3 cut(s)	195, 624, 907
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	4 cut(s)	405, 452, 624, 815
BcuI	ACTAGT	1 cut(s)	928
BfaI	CTAG	2 cut(s)	657, 929
BfmI	CTRYAG	4 cut(s)	220, 237, 268, 921
BfuAI	ACCTGC	1 cut(s)	596
BisI	GCNGC	5 cut(s)	40, 184, 429, 638, 921
BlsI	GCNGC	5 cut(s)	41, 185, 430, 639, 922
Bme1390I	CCNGG	2 cut(s)	246, 511
Bme18I	GGWCC	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	798
BmgT120I	GGNCC	2 cut(s)	478, 874
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	246, 511
BmsI	GCATC	3 cut(s)	55, 88, 401
BpuMI	CCSGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 351
Bse118I	RCCGGY	2 cut(s)	280, 839
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	11, 351
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	2 cut(s)	229, 652
BseXI	GCAGC	3 cut(s)	195, 624, 907
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	2 cut(s)	839, 875
BshTI	ACCGGT	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	3 cut(s)	246, 281, 840
BslI	CCNNNNNNNGG	2 cut(s)	11, 351
BsmAI	GTCTC	4 cut(s)	405, 452, 624, 815
BsnI	GGCC	2 cut(s)	839, 875
Bsp1286I	GDGCHC	3 cut(s)	28, 229, 652
Bsp143I	GATC	2 cut(s)	143, 733
BspACI	CCGC	2 cut(s)	40, 428
BspANI	GGCC	2 cut(s)	839, 875
BspFNI	CGCG	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	2 cut(s)	272, 925
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	3 cut(s)	138, 151, 728
BspQI	GCTCTTC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	2 cut(s)	280, 839
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	280, 839
BssMI	GATC	2 cut(s)	143, 733
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	3 cut(s)	525, 655, 888
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	5 cut(s)	44, 358, 642, 667, 700
BstDEI	CTNAG	3 cut(s)	116, 414, 827
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	562
BstKTI	GATC	2 cut(s)	146, 736
BstMAI	GTCTC	4 cut(s)	405, 452, 624, 815
BstMBI	GATC	2 cut(s)	143, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 329, 425
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	2 cut(s)	447, 648
BstSCI	CCNGG	2 cut(s)	244, 509
BstSFI	CTRYAG	4 cut(s)	220, 237, 268, 921
BstSLI	GKGCMC	2 cut(s)	229, 652
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	195, 624, 907
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	839, 875
BtrI	CACGTC	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	5 cut(s)	44, 358, 642, 667, 700
Cfr10I	RCCGGY	2 cut(s)	280, 839
Cfr13I	GGNCC	2 cut(s)	478, 874
CsiI	ACCWGGT	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	490
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	4 cut(s)	66, 444, 645, 744
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	3 cut(s)	116, 414, 827
DpnI	GATC	2 cut(s)	145, 735
DpnII	GATC	2 cut(s)	143, 733
DraIII	CACNNNGTG	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	837
Eam1104I	CTCTTC	3 cut(s)	525, 655, 888
EarI	CTCTTC	3 cut(s)	525, 655, 888
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	478
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	4 cut(s)	69, 447, 648, 747
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FatI	CATG	4 cut(s)	65, 443, 644, 743
FauNDI	CATATG	1 cut(s)	684
Fnu4HI	GCNGC	5 cut(s)	40, 184, 429, 638, 921
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	5 cut(s)	40, 184, 429, 638, 921
FspBI	CTAG	2 cut(s)	657, 929
GluI	GCNGC	5 cut(s)	40, 184, 429, 638, 921
GsaI	CCCAGC	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	839, 875
HapII	CCGG	3 cut(s)	246, 281, 840
Hin1II	CATG	4 cut(s)	69, 447, 648, 747
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	365, 598, 679
HpaII	CCGG	3 cut(s)	246, 281, 840
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	2 cut(s)	650, 784
Hpy188I	TCNGA	2 cut(s)	473, 795
Hpy188III	TCNNGA	2 cut(s)	657, 887
Hpy8I	GTNNAC	2 cut(s)	650, 784
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	4 cut(s)	243, 269, 538, 808
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	6 cut(s)	270, 443, 461, 581, 650, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 329, 425
HpyF3I	CTNAG	3 cut(s)	116, 414, 827
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	4 cut(s)	69, 447, 648, 747
Kzo9I	GATC	2 cut(s)	143, 733
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	3 cut(s)	117, 269, 796
Lsp1109I	GCAGC	3 cut(s)	195, 624, 907
LweI	GCATC	3 cut(s)	55, 88, 401
MabI	ACCWGGT	1 cut(s)	509
MaeI	CTAG	2 cut(s)	657, 929
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	2 cut(s)	145, 735
MboI	GATC	2 cut(s)	143, 733
MboII	GAAGA	3 cut(s)	542, 672, 875
MfeI	CAATTG	2 cut(s)	6, 612
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	28, 229, 652
MluCI	AATT	6 cut(s)	6, 338, 379, 485, 612, 833
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	3 cut(s)	496, 530, 818
MnlI	CCTC	9 cut(s)	142, 172, 355, 381, 418, 565, 703, 843, 887
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	776, 804
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	3 cut(s)	246, 281, 840
MspR9I	CCNGG	2 cut(s)	246, 511
MunI	CAATTG	2 cut(s)	6, 612
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	183, 329, 425
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	684
NdeII	GATC	2 cut(s)	143, 733
NlaIII	CATG	4 cut(s)	69, 447, 648, 747
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	2 cut(s)	447, 648
OliI	CACNNNNGTG	1 cut(s)	864
PciSI	GCTCTTC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	598, 679
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	41, 185, 430, 639, 922
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	776
PsiI	TTATAA	1 cut(s)	955
Psp6I	CCWGG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	478, 874
PstI	CTGCAG	2 cut(s)	272, 925
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	2 cut(s)	776, 804
SatI	GCNGC	5 cut(s)	40, 184, 429, 638, 921
Sau3AI	GATC	2 cut(s)	143, 733
Sau96I	GGNCC	2 cut(s)	478, 874
SbfI	CCTGCAGG	1 cut(s)	272
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	246, 511
SdaI	CCTGCAGG	1 cut(s)	272
SduI	GDGCHC	3 cut(s)	28, 229, 652
SexAI	ACCWGGT	1 cut(s)	509
SfaNI	GCATC	3 cut(s)	55, 88, 401
SfcI	CTRYAG	4 cut(s)	220, 237, 268, 921
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	864
SpeI	ACTAGT	1 cut(s)	928
Sse8387I	CCTGCAGG	1 cut(s)	272
Sse9I	AATT	6 cut(s)	6, 338, 379, 485, 612, 833
SsiI	CCGC	2 cut(s)	40, 428
SspMI	CTAG	2 cut(s)	657, 929
StyD4I	CCNGG	2 cut(s)	244, 509
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	1 cut(s)	800
TasI	AATT	6 cut(s)	6, 338, 379, 485, 612, 833
TauI	GCSGC	2 cut(s)	42, 431
TfiI	GAWTC	2 cut(s)	598, 679
Tru1I	TTAA	2 cut(s)	776, 804
Tru9I	TTAA	2 cut(s)	776, 804
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	3 cut(s)	183, 637, 920
TspDTI	ATGAA	2 cut(s)	43, 671
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	1 cut(s)	367
VneI	GTGCAC	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	776
XapI	RAATTY	1 cut(s)	379
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	2 cut(s)	447, 648
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	657, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.