mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 FvH4_6g09250 |
| malus_domestica | MD04G1179600.v1.1 MD12G1194700.v1.1 |
| prunus_persica | Prupe.6G299600_v2.0.a1 Prupe.6G299600_v2.0.a1 |
| pyrus_communis | pycom04g15860 pycom12g18080 pycom12g18090 |
| rosa_chinensis | RchiOBHm_Chr3g0459591 |
| rosa_laevigata | RLG00000025076 |
| rosa_multiflora | Rmu_co8219898.1_g000001 Rmu_sc0023410.1_g000001 Rmu_sc0023706.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00420150 |
| rosa_rugosa | Rorug03G0036600 |
| rosa_samantha | Rh3AG095600 Rh3BG097500 Rh3CG099900 Rh3DG099200 |
| rosa_wichuraiana | Rw0G013840 Rw0G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1061 |
| AarI | CACCTGC | 1 cut(s) | 869 |
| Acc16I | TGCGCA | 1 cut(s) | 1650 |
| Acc36I | ACCTGC | 3 cut(s) | 869, 2050, 2963 |
| AccB1I | GGYRCC | 1 cut(s) | 894 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1868 |
| AccII | CGCG | 1 cut(s) | 2929 |
| AciI | CCGC | 5 cut(s) | 1154, 2243, 2249, 2407, 2795 |
| AclWI | GGATC | 8 cut(s) | 280, 500, 1159, 1407, 1420, 2505, 2518, 3095 |
| AcoI | YGGCCR | 2 cut(s) | 15, 3204 |
| AcsI | RAATTY | 9 cut(s) | 4, 98, 163, 610, 925, 1514, 1797, 2033, 2746 |
| AdeI | CACNNNGTG | 2 cut(s) | 1400, 2807 |
| AfaI | GTAC | 4 cut(s) | 525, 1251, 1685, 2858 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 515, 904, 1375, 1626, 1868, 1986, 2117, 2378, 2718 |
| AflIII | ACRYGT | 2 cut(s) | 1210, 1929 |
| AgeI | ACCGGT | 1 cut(s) | 2647 |
| AhlI | ACTAGT | 1 cut(s) | 3295 |
| AjiI | CACGTC | 2 cut(s) | 542, 1930 |
| AjnI | CCWGG | 7 cut(s) | 435, 955, 1625, 1712, 2357, 2611, 2876 |
| AjuI | GAANNNNNNNTTGG | 5 cut(s) | 28, 2889, 2921, 2976, 3008 |
| AleI | CACNNNNGTG | 1 cut(s) | 3231 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1761, 1793, 2902, 2934 |
| Alw21I | GWGCWC | 2 cut(s) | 1042, 3019 |
| Alw26I | GTCTC | 7 cut(s) | 772, 1900, 2016, 2772, 2819, 2991, 3182 |
| Alw44I | GTGCAC | 1 cut(s) | 3015 |
| AlwI | GGATC | 8 cut(s) | 280, 500, 1159, 1407, 1420, 2505, 2518, 3095 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 770, 1670, 1909 |
| Ama87I | CYCGRG | 3 cut(s) | 533, 1955, 1998 |
| ApaLI | GTGCAC | 1 cut(s) | 3015 |
| ApoI | RAATTY | 9 cut(s) | 4, 98, 163, 610, 925, 1514, 1797, 2033, 2746 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1424, 1456 |
| AseI | ATTAAT | 2 cut(s) | 393, 3143 |
| AsiGI | ACCGGT | 1 cut(s) | 2647 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1941, 2307, 2868 |
| AspLEI | GCGC | 2 cut(s) | 243, 1651 |
| AspS9I | GGNCC | 7 cut(s) | 311, 518, 1268, 1366, 1405, 2845, 3241 |
| AsuC2I | CCSGG | 1 cut(s) | 640 |
| AsuHPI | GGTGA | 8 cut(s) | 872, 896, 975, 1005, 1463, 1583, 2880, 2974 |
| AsuNHI | GCTAGC | 3 cut(s) | 440, 2251, 2326 |
| AvaI | CYCGRG | 3 cut(s) | 533, 1955, 1998 |
| AvaII | GGWCC | 5 cut(s) | 311, 1268, 1366, 1405, 2845 |
| BaeGI | GKGCMC | 2 cut(s) | 2596, 3019 |
| BalI | TGGCCA | 1 cut(s) | 17 |
| BamHI | GGATCC | 2 cut(s) | 1412, 2510 |
| BanI | GGYRCC | 1 cut(s) | 894 |
| BanII | GRGCYC | 2 cut(s) | 1840, 2395 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 507, 539 |
| BauI | CACGAG | 1 cut(s) | 2088 |
| Bbv12I | GWGCWC | 2 cut(s) | 1042, 3019 |
| BccI | CCATC | 6 cut(s) | 356, 653, 1188, 1849, 1870, 2604 |
| BciT130I | CCWGG | 7 cut(s) | 437, 957, 1627, 1714, 2359, 2613, 2878 |
| BclI | TGATCA | 1 cut(s) | 1285 |
| BcnI | CCSGG | 1 cut(s) | 640 |
| BcoDI | GTCTC | 7 cut(s) | 772, 1900, 2016, 2772, 2819, 2991, 3182 |
| BcuI | ACTAGT | 1 cut(s) | 3295 |
| BfoI | RGCGCY | 1 cut(s) | 244 |
| BfuAI | ACCTGC | 3 cut(s) | 869, 2050, 2963 |
| Bme1390I | CCNGG | 8 cut(s) | 437, 640, 957, 1627, 1714, 2359, 2613, 2878 |
| Bme18I | GGWCC | 5 cut(s) | 311, 1268, 1366, 1405, 2845 |
| BmeT110I | CYCGRG | 3 cut(s) | 533, 1955, 1998 |
| BmgBI | CACGTC | 2 cut(s) | 542, 1930 |
| BmgT120I | GGNCC | 7 cut(s) | 311, 518, 1268, 1366, 1405, 2845, 3241 |
| BmiI | GGNNCC | 6 cut(s) | 330, 896, 1368, 1414, 1873, 2512 |
| BmrFI | CCNGG | 8 cut(s) | 437, 640, 957, 1627, 1714, 2359, 2613, 2878 |
| BmtI | GCTAGC | 3 cut(s) | 444, 2255, 2330 |
| BpmI | CTGGAG | 1 cut(s) | 1747 |
| Bpu10I | CCTNAGC | 1 cut(s) | 582 |
| BpuEI | CTTGAG | 3 cut(s) | 1553, 2038, 2309 |
| BpuMI | CCSGG | 1 cut(s) | 640 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1695, 1899 |
| BsaI | GGTCTC | 1 cut(s) | 2016 |
| BsaJI | CCNNGG | 8 cut(s) | 570, 727, 1016, 1408, 1625, 1981, 2331, 2357 |
| BsaWI | WCCGGW | 1 cut(s) | 2647 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1548, 1551, 1578, 1581, 2615, 2645 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 515, 904, 1375, 1626, 1868, 1986, 2117, 2378, 2718 |
| Bse118I | RCCGGY | 2 cut(s) | 2647, 3206 |
| Bse1I | ACTGG | 7 cut(s) | 229, 1270, 1764, 1820, 2017, 2105, 2847 |
| Bse3DI | GCAATG | 4 cut(s) | 915, 1352, 1542, 2955 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1695, 1899 |
| BseBI | CCWGG | 7 cut(s) | 437, 957, 1627, 1714, 2359, 2613, 2878 |
| BseDI | CCNNGG | 8 cut(s) | 570, 727, 1016, 1408, 1625, 1981, 2331, 2357 |
| BseGI | GGATG | 9 cut(s) | 149, 367, 601, 841, 971, 1178, 1199, 1900, 2596 |
| BseJI | GATNNNNATC | 2 cut(s) | 1695, 1899 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 515, 904, 1375, 1626, 1868, 1986, 2117, 2378, 2718 |
| BseMI | GCAATG | 4 cut(s) | 915, 1352, 1542, 2955 |
| BseMII | CTCAG | 5 cut(s) | 168, 290, 489, 1198, 1292 |
| BseNI | ACTGG | 7 cut(s) | 229, 1270, 1764, 1820, 2017, 2105, 2847 |
| BseRI | GAGGAG | 4 cut(s) | 1157, 1569, 1572, 2488 |
| BseSI | GKGCMC | 2 cut(s) | 2596, 3019 |
| BseYI | CCCAGC | 4 cut(s) | 28, 1081, 2321, 2475 |
| BsgI | GTGCAG | 3 cut(s) | 807, 1238, 1842 |
| Bsh1236I | CGCG | 1 cut(s) | 2929 |
| BshNI | GGYRCC | 1 cut(s) | 894 |
| BshTI | ACCGGT | 1 cut(s) | 2647 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1042, 3019 |
| BsiHKCI | CYCGRG | 3 cut(s) | 533, 1955, 1998 |
| BsiSI | CCGG | 3 cut(s) | 639, 2648, 3207 |
| BslFI | GGGAC | 4 cut(s) | 551, 1352, 1940, 2015 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 515, 904, 1375, 1626, 1868, 1986, 2117, 2378, 2718 |
| BsmAI | GTCTC | 7 cut(s) | 772, 1900, 2016, 2772, 2819, 2991, 3182 |
| BsmFI | GGGAC | 4 cut(s) | 551, 1352, 1940, 2015 |
| Bso31I | GGTCTC | 1 cut(s) | 2016 |
| BsoBI | CYCGRG | 3 cut(s) | 533, 1955, 1998 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1042, 1840, 2395, 2596, 3019 |
| Bsp1407I | TGTACA | 1 cut(s) | 1683 |
| Bsp143I | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| Bsp19I | CCATGG | 2 cut(s) | 1016, 1981 |
| BspACI | CCGC | 5 cut(s) | 1154, 2243, 2249, 2407, 2795 |
| BspCNI | CTCAG | 5 cut(s) | 167, 289, 488, 1197, 1293 |
| BspFNI | CGCG | 1 cut(s) | 2929 |
| BspHI | TCATGA | 2 cut(s) | 1074, 1780 |
| BspLI | GGNNCC | 6 cut(s) | 330, 896, 1368, 1414, 1873, 2512 |
| BspMAI | CTGCAG | 5 cut(s) | 117, 172, 2080, 2639, 3292 |
| BspMI | ACCTGC | 3 cut(s) | 869, 2050, 2963 |
| BspOI | GCTAGC | 3 cut(s) | 444, 2255, 2330 |
| BspPI | GGATC | 8 cut(s) | 280, 500, 1159, 1407, 1420, 2505, 2518, 3095 |
| BspQI | GCTCTTC | 1 cut(s) | 3022 |
| BspT107I | GGYRCC | 1 cut(s) | 894 |
| BspTNI | GGTCTC | 1 cut(s) | 2016 |
| BsrDI | GCAATG | 4 cut(s) | 915, 1352, 1542, 2955 |
| BsrFI | RCCGGY | 2 cut(s) | 2647, 3206 |
| BsrGI | TGTACA | 1 cut(s) | 1683 |
| BsrI | ACTGG | 7 cut(s) | 229, 1270, 1764, 1820, 2017, 2105, 2847 |
| BssAI | RCCGGY | 2 cut(s) | 2647, 3206 |
| BssECI | CCNNGG | 8 cut(s) | 570, 727, 1016, 1408, 1625, 1981, 2331, 2357 |
| BssMI | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| BssSI | CACGAG | 1 cut(s) | 2088 |
| BssT1I | CCWWGG | 6 cut(s) | 570, 727, 1016, 1408, 1981, 2331 |
| Bst2BI | CACGAG | 1 cut(s) | 2088 |
| Bst2UI | CCWGG | 7 cut(s) | 437, 957, 1627, 1714, 2359, 2613, 2878 |
| Bst4CI | ACNGT | 7 cut(s) | 126, 1330, 1339, 1643, 2233, 2342, 2861 |
| Bst6I | CTCTTC | 4 cut(s) | 1092, 2892, 3022, 3255 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 785, 2696 |
| BstAUI | TGTACA | 1 cut(s) | 1683 |
| BstDEI | CTNAG | 9 cut(s) | 154, 276, 475, 582, 1184, 1301, 2483, 2781, 3194 |
| BstDSI | CCRYGG | 2 cut(s) | 1016, 1981 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 513 |
| BstF5I | GGATG | 9 cut(s) | 149, 367, 601, 841, 971, 1178, 1199, 1900, 2596 |
| BstFNI | CGCG | 1 cut(s) | 2929 |
| BstH2I | RGCGCY | 1 cut(s) | 244 |
| BstHHI | GCGC | 2 cut(s) | 243, 1651 |
| BstKTI | GATC | 8 cut(s) | 275, 508, 981, 1167, 1288, 1415, 2513, 3103 |
| BstMAI | GTCTC | 7 cut(s) | 772, 1900, 2016, 2772, 2819, 2991, 3182 |
| BstMBI | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| BstNI | CCWGG | 7 cut(s) | 437, 957, 1627, 1714, 2359, 2613, 2878 |
| BstNSI | RCATGY | 5 cut(s) | 404, 1214, 2371, 2814, 3015 |
| BstSCI | CCNGG | 8 cut(s) | 435, 638, 955, 1625, 1712, 2357, 2611, 2876 |
| BstSLI | GKGCMC | 2 cut(s) | 2596, 3019 |
| BstUI | CGCG | 1 cut(s) | 2929 |
| BstX2I | RGATCY | 4 cut(s) | 272, 1164, 1412, 2510 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 251 |
| BstYI | RGATCY | 4 cut(s) | 272, 1164, 1412, 2510 |
| BtgI | CCRYGG | 2 cut(s) | 1016, 1981 |
| BtrI | CACGTC | 2 cut(s) | 542, 1930 |
| BtsCI | GGATG | 9 cut(s) | 149, 367, 601, 841, 971, 1178, 1199, 1900, 2596 |
| BtsI | GCAGTG | 1 cut(s) | 177 |
| BtsIMutI | CAGTG | 8 cut(s) | 177, 201, 1326, 1771, 2010, 2206, 2217, 2727 |
| BveI | ACCTGC | 3 cut(s) | 869, 2050, 2963 |
| CaiI | CAGNNNCTG | 3 cut(s) | 770, 1670, 1909 |
| CciI | TCATGA | 2 cut(s) | 1074, 1780 |
| CfoI | GCGC | 2 cut(s) | 243, 1651 |
| Cfr10I | RCCGGY | 2 cut(s) | 2647, 3206 |
| Cfr13I | GGNCC | 7 cut(s) | 311, 518, 1268, 1366, 1405, 2845, 3241 |
| CsiI | ACCWGGT | 1 cut(s) | 2876 |
| Csp6I | GTAC | 4 cut(s) | 524, 1250, 1684, 2857 |
| CspAI | ACCGGT | 1 cut(s) | 2647 |
| CviQI | GTAC | 4 cut(s) | 524, 1250, 1684, 2857 |
| DdeI | CTNAG | 9 cut(s) | 154, 276, 475, 582, 1184, 1301, 2483, 2781, 3194 |
| DpnI | GATC | 8 cut(s) | 274, 507, 980, 1166, 1287, 1414, 2512, 3102 |
| DpnII | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| DraI | TTTAAA | 1 cut(s) | 2284 |
| DraIII | CACNNNGTG | 2 cut(s) | 1400, 2807 |
| EaeI | YGGCCR | 2 cut(s) | 15, 3204 |
| Eam1104I | CTCTTC | 4 cut(s) | 1092, 2892, 3022, 3255 |
| EarI | CTCTTC | 4 cut(s) | 1092, 2892, 3022, 3255 |
| Eco130I | CCWWGG | 6 cut(s) | 570, 727, 1016, 1408, 1981, 2331 |
| Eco24I | GRGCYC | 2 cut(s) | 1840, 2395 |
| Eco31I | GGTCTC | 1 cut(s) | 2016 |
| Eco47I | GGWCC | 5 cut(s) | 311, 1268, 1366, 1405, 2845 |
| Eco88I | CYCGRG | 3 cut(s) | 533, 1955, 1998 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 513 |
| EcoO109I | RGGNCCY | 2 cut(s) | 518, 1405 |
| EcoRI | GAATTC | 4 cut(s) | 4, 163, 610, 2746 |
| EcoRII | CCWGG | 7 cut(s) | 435, 955, 1625, 1712, 2357, 2611, 2876 |
| EcoT14I | CCWWGG | 6 cut(s) | 570, 727, 1016, 1408, 1981, 2331 |
| EcoT22I | ATGCAT | 1 cut(s) | 841 |
| EcoT38I | GRGCYC | 2 cut(s) | 1840, 2395 |
| ErhI | CCWWGG | 6 cut(s) | 570, 727, 1016, 1408, 1981, 2331 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2166, 2198, 2889, 2921 |
| FaqI | GGGAC | 4 cut(s) | 551, 1352, 1940, 2015 |
| FauNDI | CATATG | 2 cut(s) | 1290, 3051 |
| FbaI | TGATCA | 1 cut(s) | 1285 |
| FokI | GGATG | 9 cut(s) | 136, 374, 608, 848, 958, 1165, 1206, 1907, 2583 |
| FriOI | GRGCYC | 2 cut(s) | 1840, 2395 |
| FspAI | RTGCGCAY | 1 cut(s) | 1650 |
| FspI | TGCGCA | 1 cut(s) | 1650 |
| GlaI | GCGC | 2 cut(s) | 242, 1650 |
| GsaI | CCCAGC | 4 cut(s) | 32, 1085, 2325, 2479 |
| GsuI | CTGGAG | 1 cut(s) | 1747 |
| HaeII | RGCGCY | 1 cut(s) | 244 |
| HapII | CCGG | 3 cut(s) | 639, 2648, 3207 |
| HhaI | GCGC | 2 cut(s) | 243, 1651 |
| Hin6I | GCGC | 2 cut(s) | 241, 1649 |
| HinP1I | GCGC | 2 cut(s) | 241, 1649 |
| HincII | GTYRAC | 1 cut(s) | 1023 |
| HindII | GTYRAC | 1 cut(s) | 1023 |
| HindIII | AAGCTT | 5 cut(s) | 54, 909, 1232, 1320, 2903 |
| HpaII | CCGG | 3 cut(s) | 639, 2648, 3207 |
| HphI | GGTGA | 8 cut(s) | 872, 896, 975, 1005, 1463, 1583, 2880, 2974 |
| Hpy166II | GTNNAC | 5 cut(s) | 79, 1023, 1468, 3017, 3151 |
| Hpy188I | TCNGA | 8 cut(s) | 157, 279, 772, 1187, 1672, 1905, 2167, 2840 |
| Hpy8I | GTNNAC | 5 cut(s) | 79, 1023, 1468, 3017, 3151 |
| HpyCH4III | ACNGT | 7 cut(s) | 126, 1330, 1339, 1643, 2233, 2342, 2861 |
| HpyCH4IV | ACGT | 4 cut(s) | 502, 541, 1929, 3164 |
| HpyF3I | CTNAG | 9 cut(s) | 154, 276, 475, 582, 1184, 1301, 2483, 2781, 3194 |
| HpySE526I | ACGT | 4 cut(s) | 502, 541, 1929, 3164 |
| HspAI | GCGC | 2 cut(s) | 241, 1649 |
| Ksp22I | TGATCA | 1 cut(s) | 1285 |
| Kzo9I | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| LguI | GCTCTTC | 1 cut(s) | 3022 |
| LmnI | GCTCC | 7 cut(s) | 426, 1037, 1559, 1877, 2484, 2636, 3163 |
| MabI | ACCWGGT | 1 cut(s) | 2876 |
| MaeII | ACGT | 4 cut(s) | 502, 541, 1929, 3164 |
| MaeIII | GTNAC | 8 cut(s) | 537, 884, 1011, 1134, 1274, 2066, 2083, 2880 |
| MalI | GATC | 8 cut(s) | 274, 507, 980, 1166, 1287, 1414, 2512, 3102 |
| MboI | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| MboII | GAAGA | 8 cut(s) | 668, 705, 1109, 1490, 1493, 2909, 3039, 3242 |
| MfeI | CAATTG | 3 cut(s) | 576, 2373, 2979 |
| MflI | RGATCY | 4 cut(s) | 272, 1164, 1412, 2510 |
| MhlI | GDGCHC | 5 cut(s) | 1042, 1840, 2395, 2596, 3019 |
| MlsI | TGGCCA | 1 cut(s) | 17 |
| MluNI | TGGCCA | 1 cut(s) | 17 |
| MlyI | GAGTC | 5 cut(s) | 219, 545, 1466, 2171, 2726 |
| MmeI | TCCRAC | 4 cut(s) | 1914, 2863, 2897, 3185 |
| Mox20I | TGGCCA | 1 cut(s) | 17 |
| Mph1103I | ATGCAT | 1 cut(s) | 841 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1941, 2307, 2868 |
| MscI | TGGCCA | 1 cut(s) | 17 |
| MslI | CAYNNNNRTG | 4 cut(s) | 23, 254, 1656, 3231 |
| Msp20I | TGGCCA | 1 cut(s) | 17 |
| MspA1I | CMGCKG | 2 cut(s) | 855, 2409 |
| MspI | CCGG | 3 cut(s) | 639, 2648, 3207 |
| MspR9I | CCNGG | 8 cut(s) | 437, 640, 957, 1627, 1714, 2359, 2613, 2878 |
| MunI | CAATTG | 3 cut(s) | 576, 2373, 2979 |
| MvaI | CCWGG | 7 cut(s) | 437, 957, 1627, 1714, 2359, 2613, 2878 |
| MvnI | CGCG | 1 cut(s) | 2929 |
| NciI | CCSGG | 1 cut(s) | 640 |
| NcoI | CCATGG | 2 cut(s) | 1016, 1981 |
| NdeI | CATATG | 2 cut(s) | 1290, 3051 |
| NdeII | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| NheI | GCTAGC | 3 cut(s) | 440, 2251, 2326 |
| NlaIV | GGNNCC | 6 cut(s) | 330, 896, 1368, 1414, 1873, 2512 |
| NmuCI | GTSAC | 6 cut(s) | 537, 884, 1011, 1134, 1274, 2083 |
| NsbI | TGCGCA | 1 cut(s) | 1650 |
| NsiI | ATGCAT | 1 cut(s) | 841 |
| NspI | RCATGY | 5 cut(s) | 404, 1214, 2371, 2814, 3015 |
| OliI | CACNNNNGTG | 1 cut(s) | 3231 |
| PaeI | GCATGC | 1 cut(s) | 2371 |
| PaeR7I | CTCGAG | 2 cut(s) | 533, 1955 |
| PagI | TCATGA | 2 cut(s) | 1074, 1780 |
| PaqCI | CACCTGC | 1 cut(s) | 869 |
| PciI | ACATGT | 1 cut(s) | 1210 |
| PciSI | GCTCTTC | 1 cut(s) | 3022 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1941, 2307, 2868 |
| PfeI | GAWTC | 8 cut(s) | 773, 1052, 1661, 1691, 1900, 2146, 2965, 3046 |
| PflFI | GACNNNGTC | 1 cut(s) | 1272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1868 |
| PfoI | TCCNGGA | 1 cut(s) | 638 |
| PinAI | ACCGGT | 1 cut(s) | 2647 |
| PleI | GAGTC | 5 cut(s) | 218, 544, 1465, 2170, 2726 |
| PpsI | GAGTC | 5 cut(s) | 218, 544, 1465, 2170, 2726 |
| PpuMI | RGGWCCY | 1 cut(s) | 1405 |
| PscI | ACATGT | 1 cut(s) | 1210 |
| PshBI | ATTAAT | 2 cut(s) | 393, 3143 |
| PsiI | TTATAA | 1 cut(s) | 1061 |
| Psp5II | RGGWCCY | 1 cut(s) | 1405 |
| Psp6I | CCWGG | 7 cut(s) | 435, 955, 1625, 1712, 2357, 2611, 2876 |
| PspFI | CCCAGC | 4 cut(s) | 28, 1081, 2321, 2475 |
| PspGI | CCWGG | 7 cut(s) | 435, 955, 1625, 1712, 2357, 2611, 2876 |
| PspN4I | GGNNCC | 6 cut(s) | 330, 896, 1368, 1414, 1873, 2512 |
| PspPI | GGNCC | 7 cut(s) | 311, 518, 1268, 1366, 1405, 2845, 3241 |
| PspPPI | RGGWCCY | 1 cut(s) | 1405 |
| PstI | CTGCAG | 5 cut(s) | 117, 172, 2080, 2639, 3292 |
| PstNI | CAGNNNCTG | 3 cut(s) | 770, 1670, 1909 |
| PsuI | RGATCY | 4 cut(s) | 272, 1164, 1412, 2510 |
| PsyI | GACNNNGTC | 1 cut(s) | 1272 |
| PvuII | CAGCTG | 1 cut(s) | 855 |
| RsaI | GTAC | 4 cut(s) | 525, 1251, 1685, 2858 |
| RsaNI | GTAC | 4 cut(s) | 524, 1250, 1684, 2857 |
| RseI | CAYNNNNRTG | 4 cut(s) | 23, 254, 1656, 3231 |
| SapI | GCTCTTC | 1 cut(s) | 3022 |
| Sau3AI | GATC | 8 cut(s) | 272, 505, 978, 1164, 1285, 1412, 2510, 3100 |
| Sau96I | GGNCC | 7 cut(s) | 311, 518, 1268, 1366, 1405, 2845, 3241 |
| SbfI | CCTGCAGG | 1 cut(s) | 2639 |
| SchI | GAGTC | 5 cut(s) | 219, 545, 1466, 2171, 2726 |
| ScrFI | CCNGG | 8 cut(s) | 437, 640, 957, 1627, 1714, 2359, 2613, 2878 |
| SdaI | CCTGCAGG | 1 cut(s) | 2639 |
| SduI | GDGCHC | 5 cut(s) | 1042, 1840, 2395, 2596, 3019 |
| SexAI | ACCWGGT | 1 cut(s) | 2876 |
| Sfr274I | CTCGAG | 2 cut(s) | 533, 1955 |
| SinI | GGWCC | 5 cut(s) | 311, 1268, 1366, 1405, 2845 |
| SlaI | CTCGAG | 2 cut(s) | 533, 1955 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 23, 254, 1656, 3231 |
| SmlI | CTYRAG | 5 cut(s) | 533, 1532, 1955, 2017, 2288 |
| SmoI | CTYRAG | 5 cut(s) | 533, 1532, 1955, 2017, 2288 |
| SpeI | ACTAGT | 1 cut(s) | 3295 |
| SphI | GCATGC | 1 cut(s) | 2371 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2639 |
| SsiI | CCGC | 5 cut(s) | 1154, 2243, 2249, 2407, 2795 |
| StyD4I | CCNGG | 8 cut(s) | 435, 638, 955, 1625, 1712, 2357, 2611, 2876 |
| StyI | CCWWGG | 6 cut(s) | 570, 727, 1016, 1408, 1981, 2331 |
| TaaI | ACNGT | 7 cut(s) | 126, 1330, 1339, 1643, 2233, 2342, 2861 |
| TaiI | ACGT | 4 cut(s) | 505, 544, 1932, 3167 |
| TaqI | TCGA | 4 cut(s) | 534, 933, 1956, 2160 |
| TatI | WGTACW | 1 cut(s) | 1683 |
| TauI | GCSGC | 3 cut(s) | 1157, 2409, 2798 |
| TfiI | GAWTC | 8 cut(s) | 773, 1052, 1661, 1691, 1900, 2146, 2965, 3046 |
| TscAI | CASTG | 8 cut(s) | 177, 201, 1333, 1771, 2017, 2206, 2224, 2734 |
| TseFI | GTSAC | 6 cut(s) | 537, 884, 1011, 1134, 1274, 2083 |
| Tsp45I | GTSAC | 6 cut(s) | 537, 884, 1011, 1134, 1274, 2083 |
| TspGWI | ACGGA | 2 cut(s) | 1453, 2911 |
| TspRI | CASTG | 8 cut(s) | 177, 201, 1333, 1771, 2017, 2206, 2224, 2734 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1868 |
| VneI | GTGCAC | 1 cut(s) | 3015 |
| VpaK11BI | GGWCC | 5 cut(s) | 311, 1268, 1366, 1405, 2845 |
| VspI | ATTAAT | 2 cut(s) | 393, 3143 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 513 |
| XapI | RAATTY | 9 cut(s) | 4, 98, 163, 610, 925, 1514, 1797, 2033, 2746 |
| XbaI | TCTAGA | 1 cut(s) | 3023 |
| XceI | RCATGY | 5 cut(s) | 404, 1214, 2371, 2814, 3015 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 25 |
| XhoI | CTCGAG | 2 cut(s) | 533, 1955 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1941, 2307, 2868 |
| Zsp2I | ATGCAT | 1 cut(s) | 841 |