Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0017403

Physical Location & Seq

Genomic Coordinates Reverse (-)

19345339 .. 19347552

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAGTTTTATTATTAATTTCATTTTGTACTTAATAGTAATTATAAAGAGATTATGGATTAATATTTTCATCGACCTCAACGACGTCGTCAAGTCTTCATCCACAGCTCTCTCTCTCTCTCTCTGTTTCCATCTCTCAATTATTTGTAGTTCCTCTCTCAATCTTCTTAATCTTCACAGATTGATCGATCTAAACCTCTCATTTCGATCCAAATTCATCCTCCAATTCCCCCCAAATCAGCTTCACTTTTCTATTTTGGTACCAGTTTCAGAGACCCAATTGGCAAACGAGTCCTCCTCCGAATCCTCCACCAAAAGCTGGGTTTTTTCAGGTCAGGTTGTACAATCTATATCTGAAGTGTCATCAATGGCTGAGCAACGAAAAGGTAATGTCAAACCTGCGAATGGGAAGTCATCAGGAACCGCAACAGCGACCGCCAGTGCATATTCCATTGATCTCAATAACTTCAGCAAGCGGTTAAAGATGTTATATTCACATTGGAGGGAACATCGTAGTGATCTATGGGGTGAATCTGATGCACTTGCAATAGCAACTCCTCCAACTTCTGAGGATCTGCGGTATCTGAAATCCTCAGCAATGAATATCTGGTTGCTCGGTTACGAGTTTCCAGAAACTGTCATGGTTTTTGCAAAGAAGCAGATCCATGTTTTGTGTAGCCAGAAAAAGGCTTCTCTCCTTGATGTTGTGATAAAGCCTGCAAAAGAGGCTGTTGGTGTTGAAGTGGTGATGCATGTGAAACTCAAGGGCCAGGATGGAACCGGACTGATGGATAGCATATTCCGAGCTGTAAATGCCCACTCGAGCTCCGATGCTCCTGTTGTTGGACACATAGCAAGAGAGGCTCCTGAAGGGAAACTTTTGGAGACTTGGAGTGAGAAGTTGAAGAATGCTAATTTTGAGTTGAGTGATGTGACCAATGGGTTCTCAGACTTGTTTGCCGTCAAAGACCCTGTTGAGCTTACATATGTGAAGAAAGCGGCATACTTGACTTCGTCAGTGATGAAGACTTTTGTGGTACCTAAGCTTGAGAAGGTCATTGATGAGGAAAAGAAAATTTCCCATTCTTCATTGATGGATGACACGGAAAAGGTCATATTGGAGCCTGCAAAAATTAAGGTGAAGCTGACGGCAGCAAATGTTGATATTTGCTATCCTCCAATTTTTCAGAGTGGAGGACAATTTGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

404

Amino Acids

44.75

Weight (kDa)

8.18

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017403)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g16710
rosa_laevigata	RLG00000002627 RLG00000015551 RLG00000018595 RLG00000028922
rosa_multiflora	Rmu_co8381587.1_g000001 Rmu_sc0004848.1_g000009 Rmu_ssc0000454.1_g000015
rosa_roxburghii	Rroxscaffold_3G00224550 Rroxscaffold_3G00224590
rosa_samantha	Rh1AG015700 Rh2AG138900
rosa_wichuraiana	Rw1G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	406
Acc65I	GGTACC	2 cut(s)	259, 1036
AccB1I	GGYRCC	2 cut(s)	259, 1036
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	5 cut(s)	423, 435, 475, 577, 998
AclWI	GGATC	3 cut(s)	201, 579, 655
AcsI	RAATTY	2 cut(s)	212, 1074
AcuI	CTGAAG	3 cut(s)	375, 451, 888
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	4 cut(s)	29, 261, 342, 1038
AfiI	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
AgsI	TTSAA	2 cut(s)	740, 904
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	8 cut(s)	107, 241, 318, 806, 825, 979, 1045, 1144
AluI	AGCT	8 cut(s)	107, 241, 318, 806, 825, 979, 1045, 1144
Alw21I	GWGCWC	1 cut(s)	827
Alw26I	GTCTC	2 cut(s)	266, 878
AlwI	GGATC	3 cut(s)	201, 579, 655
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	1 cut(s)	1151
ApoI	RAATTY	2 cut(s)	212, 1074
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AseI	ATTAAT	2 cut(s)	15, 60
Asp718I	GGTACC	2 cut(s)	259, 1036
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	3 cut(s)	539, 757, 1150
AvaI	CYCGRG	1 cut(s)	820
BanI	GGYRCC	2 cut(s)	259, 1036
BanII	GRGCYC	1 cut(s)	827
BbsI	GAAGAC	2 cut(s)	87, 1031
Bbv12I	GWGCWC	1 cut(s)	827
BbvCI	CCTCAGC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	1163
BccI	CCATC	4 cut(s)	138, 767, 781, 1087
BceAI	ACGGC	2 cut(s)	944, 1164
BciT130I	CCWGG	1 cut(s)	770
BcoDI	GTCTC	2 cut(s)	266, 878
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	999, 1152
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	2 cut(s)	1000, 1153
Bme1390I	CCNGG	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	3 cut(s)	526, 738, 820
BpiI	GAAGAC	2 cut(s)	87, 1031
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu10I	CCTNAGC	2 cut(s)	592, 1041
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	746, 1067
Bsa29I	ATCGAT	2 cut(s)	186, 1207
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	779
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 809, 839
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
Bse1I	ACTGG	2 cut(s)	263, 438
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	770
BseCI	ATCGAT	2 cut(s)	186, 1207
BseGI	GGATG	4 cut(s)	98, 216, 778, 1102
BseLI	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	4 cut(s)	363, 558, 606, 960
BseNI	ACTGG	2 cut(s)	263, 438
BseRI	GAGGAG	2 cut(s)	286, 546
BseXI	GCAGC	1 cut(s)	1163
BseYI	CCCAGC	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	2 cut(s)	259, 1036
BshVI	ATCGAT	2 cut(s)	186, 1207
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	827
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	1 cut(s)	780
BslI	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
BsmAI	GTCTC	2 cut(s)	266, 878
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	1 cut(s)	768
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	423, 435, 475, 577, 998
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	4 cut(s)	364, 559, 605, 959
BspDI	ATCGAT	2 cut(s)	186, 1207
BspLI	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	3 cut(s)	201, 579, 655
BspT107I	GGYRCC	2 cut(s)	259, 1036
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	263, 438
BssMI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	1 cut(s)	637
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	473, 717, 1125
BstDEI	CTNAG	5 cut(s)	372, 567, 592, 946, 1041
BstF5I	GGATG	4 cut(s)	98, 216, 778, 1102
BstKTI	GATC	8 cut(s)	186, 190, 209, 457, 520, 574, 663, 1207
BstMAI	GTCTC	2 cut(s)	266, 878
BstMBI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	3 cut(s)	725, 812, 860
BstNI	CCWGG	1 cut(s)	770
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	1163
BstV2I	GAAGAC	2 cut(s)	87, 1031
BstX2I	RGATCY	2 cut(s)	571, 660
BstYI	RGATCY	2 cut(s)	571, 660
Bsu15I	ATCGAT	2 cut(s)	186, 1207
BsuRI	GGCC	1 cut(s)	768
BsuTUI	ATCGAT	2 cut(s)	186, 1207
BtsCI	GGATG	4 cut(s)	98, 216, 778, 1102
BtsIMutI	CAGTG	2 cut(s)	445, 1023
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	3 cut(s)	473, 717, 1125
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	766
ClaI	ATCGAT	2 cut(s)	186, 1207
Csp6I	GTAC	4 cut(s)	28, 260, 341, 1037
CviAII	CATG	3 cut(s)	640, 665, 752
CviQI	GTAC	4 cut(s)	28, 260, 341, 1037
DdeI	CTNAG	5 cut(s)	372, 567, 592, 946, 1041
DpnI	GATC	8 cut(s)	185, 189, 208, 456, 519, 573, 662, 1206
DpnII	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
Ecl136II	GAGCTC	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	825
Eco57I	CTGAAG	3 cut(s)	375, 451, 888
Eco88I	CYCGRG	1 cut(s)	820
EcoICRI	GAGCTC	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	827
FaeI	CATG	3 cut(s)	643, 668, 755
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FatI	CATG	3 cut(s)	639, 664, 751
FauNDI	CATATG	1 cut(s)	985
Fnu4HI	GCNGC	2 cut(s)	999, 1152
FokI	GGATG	4 cut(s)	85, 203, 785, 1109
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	2 cut(s)	999, 1152
GluI	GCNGC	2 cut(s)	999, 1152
GsaI	CCCAGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	643, 668, 755
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	3 cut(s)	290, 302, 530
HpaII	CCGG	1 cut(s)	780
HphI	GGTGA	3 cut(s)	539, 757, 1150
Hpy188III	TCNNGA	3 cut(s)	417, 629, 866
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	2 cut(s)	863, 1045
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	7 cut(s)	443, 539, 545, 650, 719, 751, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	725, 812, 860
HpyF3I	CTNAG	5 cut(s)	372, 567, 592, 946, 1041
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	643, 668, 755
KpnI	GGTACC	2 cut(s)	263, 1040
Kzo9I	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
LmnI	GCTCC	4 cut(s)	830, 838, 868, 1120
Lsp1109I	GCAGC	1 cut(s)	1163
LweI	GCATC	3 cut(s)	526, 738, 820
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	617, 931
MalI	GATC	8 cut(s)	185, 189, 208, 456, 519, 573, 662, 1206
MboI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
MboII	GAAGA	7 cut(s)	87, 155, 164, 916, 1003, 1036, 1077
MfeI	CAATTG	1 cut(s)	278
MflI	RGATCY	2 cut(s)	571, 660
MhlI	GDGCHC	1 cut(s)	827
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	584, 823
Mph1103I	ATGCAT	1 cut(s)	753
MseI	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
MslI	CAYNNNNRTG	1 cut(s)	513
MspI	CCGG	1 cut(s)	780
MspR9I	CCNGG	1 cut(s)	770
MunI	CAATTG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	3 cut(s)	725, 812, 860
NdeI	CATATG	1 cut(s)	985
NdeII	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
NlaIII	CATG	3 cut(s)	643, 668, 755
NlaIV	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
NmuCI	GTSAC	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	2 cut(s)	302, 530
PflFI	GACNNNGTC	2 cut(s)	86, 1012
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	1000, 1153
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	2 cut(s)	15, 60
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	768
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
PspPI	GGNCC	1 cut(s)	766
PspXI	VCTCGAGB	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	571, 660
PsyI	GACNNNGTC	2 cut(s)	86, 1012
RsaI	GTAC	4 cut(s)	29, 261, 342, 1038
RsaNI	GTAC	4 cut(s)	28, 260, 341, 1037
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	827
SaqAI	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
SatI	GCNGC	2 cut(s)	999, 1152
Sau3AI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
Sau96I	GGNCC	1 cut(s)	766
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	827
SfaNI	GCATC	3 cut(s)	526, 738, 820
Sfr274I	CTCGAG	1 cut(s)	820
SlaI	CTCGAG	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	3 cut(s)	761, 820, 1046
SmoI	CTYRAG	3 cut(s)	761, 820, 1046
SsiI	CCGC	5 cut(s)	423, 435, 475, 577, 998
SspI	AATATT	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	768
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	72, 186, 205, 821, 1207
TatI	WGTACW	2 cut(s)	27, 340
TauI	GCSGC	1 cut(s)	1001
TfiI	GAWTC	2 cut(s)	302, 530
Tru1I	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
Tru9I	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
TscAI	CASTG	2 cut(s)	445, 1023
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	1 cut(s)	1151
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	7 cut(s)	10, 58, 87, 205, 614, 1037, 1077
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	2 cut(s)	445, 1023
Tth111I	GACNNNGTC	2 cut(s)	86, 1012
Van91I	CCANNNNNTGG	1 cut(s)	318
VspI	ATTAAT	2 cut(s)	15, 60
XapI	RAATTY	2 cut(s)	212, 1074
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	820
ZraI	GACGTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.