RLG00000028922

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017403
Physical Location & Seq
Forward (+)
30222664 .. 30223704
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028922

Sequence Viewer

Length: 480 bp
ATGACATATACAGTTGGCGACAGATTCTTGGGAATAGTGGCAAACATTGATACGTCCTGCTCATGTAATCGAATCTTTGAAGCTGCTCTTGAGCATCTTGTGTTAGCCAGCAGGAATATGGTGGCAAATGGCCAGGAAGTGGAGGTAAACTCTGTTGACAGCAAAATTGGAGACACATACTTACCCTTGTCCGGGTATGATGAGGCTGTTTTTGCTTATGAGAAGGCGTTAAATGTGTTTAAGACTACTAAAGGAGAGAATCATCCATCTGTTGGTTCAGTTTTCATCCGTCTGGCAGATTTGTATAACAGGACAGGTAAAATTACAGAATCAATATCATACTGTGAGAATGCTCTTCGAGGACATAGCGTCAATTACTTGAAGTTGTTGGATAGCCTTAAACACAAGGATTTCTTATTATTGCTACGAGGACTTTCGTGGCTGCAAAAGAAAACCCTCTATCCTTTATCCTCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

6.9

Isoelectric Point (pI)

20.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 50 - 120 5.5e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 272
AcoI YGGCCR 1 cut(s) 130
AfiI CCNNNNNNNGG 4 cut(s) 139, 191, 192, 272
AgsI TTSAA 2 cut(s) 80, 382
AhdI GACNNNNNGTC 1 cut(s) 368
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 165
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 83, 442
AsuC2I CCSGG 1 cut(s) 193
BalI TGGCCA 1 cut(s) 132
BbvI GCAGC 2 cut(s) 70, 429
BccI CCATC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 165
BisI GCNGC 2 cut(s) 84, 443
BlsI GCNGC 2 cut(s) 85, 444
Bme1390I CCNGG 2 cut(s) 134, 193
BmeRI GACNNNNNGTC 1 cut(s) 368
BmrFI CCNGG 2 cut(s) 134, 193
BmsI GCATC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 191, 192, 272
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 262, 285
BseLI CCNNNNNNNGG 4 cut(s) 139, 191, 192, 272
BseXI GCAGC 2 cut(s) 70, 429
BshFI GGCC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 4 cut(s) 139, 191, 192, 272
BsmAI GTCTC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 132
BspANI GGCC 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 13, 344
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 109
BstF5I GGATG 2 cut(s) 262, 285
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 132, 191
BstV1I GCAGC 2 cut(s) 70, 429
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 262, 285
Cac8I GCNNGC 1 cut(s) 109
CseI GACGC 1 cut(s) 358
CviAII CATG 1 cut(s) 63
CviJI RGCY 6 cut(s) 83, 107, 132, 206, 396, 442
CviKI_1 RGCY 6 cut(s) 83, 107, 132, 206, 396, 442
DriI GACNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 360
Eam1105I GACNNNNNGTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 66
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 398, 430
FatI CATG 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 84, 443
FokI GGATG 2 cut(s) 249, 272
Fsp4HI GCNGC 2 cut(s) 84, 443
GluI GCNGC 2 cut(s) 84, 443
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 358
Hin1II CATG 1 cut(s) 66
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 24, 72, 259, 329
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 148, 157
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 148, 157
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 13, 344
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 1 cut(s) 66
LguI GCTCTTC 1 cut(s) 360
LpnPI CCDG 9 cut(s) 70, 97, 119, 121, 146, 205, 278, 295, 300
Lsp1109I GCAGC 2 cut(s) 70, 429
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 53
MboII GAAGA 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 3 cut(s) 165, 321, 373
MluNI TGGCCA 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 5 cut(s) 136, 196, 353, 422, 467
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
MseI TTAA 3 cut(s) 230, 240, 399
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 134, 193
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 193
NlaIII CATG 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 4 cut(s) 24, 72, 259, 329
PflMI CCANNNNNTGG 2 cut(s) 139, 272
PkrI GCNGC 2 cut(s) 85, 444
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 3 cut(s) 230, 240, 399
SatI GCNGC 2 cut(s) 84, 443
ScrFI CCNGG 2 cut(s) 134, 193
SetI ASST 4 cut(s) 56, 85, 147, 319
SfaNI GCATC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 165, 321, 373
StyD4I CCNGG 2 cut(s) 132, 191
TaaI ACNGT 2 cut(s) 13, 344
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 70, 358
TasI AATT 3 cut(s) 165, 321, 373
TfiI GAWTC 4 cut(s) 24, 72, 259, 329
Tru1I TTAA 3 cut(s) 230, 240, 399
Tru9I TTAA 3 cut(s) 230, 240, 399
TseI GCWGC 2 cut(s) 83, 442
TspDTI ATGAA 1 cut(s) 274
TspGWI ACGGA 1 cut(s) 278
Van91I CCANNNNNTGG 2 cut(s) 139, 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.