Rmu_co8381587.1_g000001

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8381587.1
OG0017403
Physical Location & Seq
Reverse (-)
2 .. 575
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8381587.1_g000001.1.cds

Sequence Viewer

Length: 574 bp
atggctgataatcgaaatggaaatagtaagcctacaaaggcagctggagcaggaaataatccctattccattgatttgaatgtcttcagtcagagattgaagtccctctattcgcactggaatgagcagcctgagttgtgggattctagtgacgttattgcgattgcaacaccgccgcaatcagatgaaatccggtaccttaagtcttcagcattgcagatgtggttggttgggtatgatgttccggatacgataatggtgttcatgaagaaggagattcatttcttgggtagccagaagaaggtgtcttttttccaaggtgtgaagaagtctgccaaagacgctgtgggtgttgatgttgtgacgcatgtgaaggcaaagagtgatgatggcagtgctctgatggatactattttgggtgtaattcatgcccaaccaaaggctgatggccgtgatactgttgttgtaggaaggatagcaagggaggatcctgaggggaatcttttgaaattgtggtttgagaagctgaagagtgcaactgttcagcttggtgatgtaacaaatgggttgtctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

191

Amino Acids

20.96

Weight (kDa)

6.91

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 173, 176
AclWI GGATC 2 cut(s) 482, 495
AcoI YGGCCR 1 cut(s) 448
AcuI CTGAAG 3 cut(s) 70, 192, 548
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 301, 439
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 3 cut(s) 79, 100, 508
AluBI AGCT 3 cut(s) 44, 526, 547
AluI AGCT 3 cut(s) 44, 526, 547
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 2 cut(s) 482, 495
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 41, 127
ArsI GACNNNNNNTTYG 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 563
AxyI CCTNAGG 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 76, 198
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 53, 139
BccI CCATC 3 cut(s) 383, 397, 440
BceAI ACGGC 1 cut(s) 435
BciVI GTATCC 2 cut(s) 241, 400
BfaI CTAG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 200
BfuI GTATCC 2 cut(s) 241, 400
BisI GCNGC 3 cut(s) 42, 128, 176
BlsI GCNGC 3 cut(s) 43, 129, 177
BmiI GGNNCC 2 cut(s) 197, 489
BpiI GAAGAC 2 cut(s) 76, 198
BpmI CTGGAG 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 2 cut(s) 192, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 439
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 492
Bse3DI GCAATG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 301, 439
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 123, 483
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 53, 139
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 2 cut(s) 193, 245
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 301, 439
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 400
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 487
BspACI CCGC 2 cut(s) 173, 176
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 2 cut(s) 124, 484
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 197, 489
BspPI GGATC 2 cut(s) 482, 495
BspT107I GGYRCC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 487
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 460, 541
Bst6I CTCTTC 1 cut(s) 524
BstAFI CTTAAG 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 132, 492
BstKTI GATC 1 cut(s) 490
BstMBI GATC 1 cut(s) 487
BstMWI GCNNNNNNNGC 2 cut(s) 47, 341
BstNSI RCATGY 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 53, 139
BstV2I GAAGAC 2 cut(s) 76, 198
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu36I CCTNAGG 1 cut(s) 492
BsuI GTATCC 2 cut(s) 241, 400
BsuRI GGCC 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 115, 400
CciI TCATGA 1 cut(s) 264
CseI GACGC 2 cut(s) 350, 373
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 265, 368, 428
CviJI RGCY 9 cut(s) 5, 31, 44, 130, 294, 443, 450, 526, 547
CviKI_1 RGCY 9 cut(s) 5, 31, 44, 130, 294, 443, 450, 526, 547
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 132, 492
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 316
Eco57I CTGAAG 3 cut(s) 70, 192, 548
Eco81I CCTNAGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 3 cut(s) 268, 371, 431
FaiI YATR 4 cut(s) 237, 266, 369, 429
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 264, 367, 427
Fnu4HI GCNGC 3 cut(s) 42, 128, 176
Fsp4HI GCNGC 3 cut(s) 42, 128, 176
FspBI CTAG 1 cut(s) 147
GluI GCNGC 3 cut(s) 42, 128, 176
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 450
HapII CCGG 2 cut(s) 193, 245
HgaI GACGC 2 cut(s) 350, 373
Hin1II CATG 3 cut(s) 268, 371, 431
HinfI GANTC 3 cut(s) 143, 277, 499
HpaII CCGG 2 cut(s) 193, 245
HphI GGTGA 1 cut(s) 563
Hpy188I TCNGA 3 cut(s) 93, 184, 402
Hpy188III TCNNGA 3 cut(s) 245, 265, 491
HpyAV CCTTC 4 cut(s) 265, 295, 367, 465
HpyCH4III ACNGT 2 cut(s) 460, 541
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 167, 217, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 341
HpyF3I CTNAG 2 cut(s) 132, 492
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 268, 371, 431
Kpn2I TCCGGA 1 cut(s) 244
KpnI GGTACC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 8 cut(s) 30, 36, 103, 144, 206, 258, 308, 504
Lsp1109I GCAGC 2 cut(s) 53, 139
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 149, 361, 556
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 6 cut(s) 76, 198, 280, 310, 337, 541
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 2 cut(s) 423, 509
MnlI CCTC 3 cut(s) 116, 478, 487
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 2 cut(s) 193, 245
MwoI GCNNNNNNNGC 2 cut(s) 47, 341
NdeII GATC 1 cut(s) 487
NlaIII CATG 3 cut(s) 268, 371, 431
NlaIV GGNNCC 2 cut(s) 197, 489
NmuCI GTSAC 2 cut(s) 149, 361
NspI RCATGY 1 cut(s) 371
PagI TCATGA 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 3 cut(s) 143, 277, 499
PkrI GCNGC 3 cut(s) 43, 129, 177
PspN4I GGNNCC 2 cut(s) 197, 489
PsuI RGATCY 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 42, 128, 176
Sau3AI GATC 1 cut(s) 487
SduI GDGCHC 1 cut(s) 400
SetI ASST 7 cut(s) 46, 156, 201, 306, 322, 528, 549
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 423, 509
SsiI CCGC 2 cut(s) 173, 176
SspMI CTAG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 460, 541
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 13
TasI AATT 2 cut(s) 423, 509
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 3 cut(s) 143, 277, 499
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 122, 400
TseFI GTSAC 2 cut(s) 149, 361
TseI GCWGC 2 cut(s) 41, 127
Tsp45I GTSAC 2 cut(s) 149, 361
TspDTI ATGAA 5 cut(s) 201, 253, 269, 281, 416
TspRI CASTG 2 cut(s) 122, 400
Vha464I CTTAAG 1 cut(s) 200
XceI RCATGY 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.