RLG00000015551

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017403
Physical Location & Seq
Reverse (-)
67779211 .. 67781711
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015551

Sequence Viewer

Length: 837 bp
ATGTTTGTACCGATAGCTAATGTTACTGAGGAAATGGAAGCTATTATGGTAACTGATATTCTACGACGAGTCAAACCAATTGTTGCAGCTGCATCTGTAGAAGACAAGCTAGAAACTATTACTTCACGCGAAGTAGTTGGCGACAGATTCATCGGAATAGTGACAAACATTGGTACATCATGCTCATGTAATCAAATCTTTGAAGCTGCTCTTGAGAATCTTGTTTTAGCCAGCAGGGCTATGGTGGCAAATGACCAGGAAGTGGAGGTAGATTCTGTTGACAGCAAAATTGGAGACACATACTTACCCTTGTCCCAGTCTGATGAGGCTGTTTTTGCTTATGAGAAGGCACTAAATGTGTTTAGGATCACTAGAGGAGACAATCATCCATCTGTTGGTTCAGTTTTCATCCGTCTAGCAGATCTATATAACAGGACAGGTAAAGTTACGGAATCAATATCATACAATGAGACTGCTCTTCGAATTTATGAAAAGCCCATGCCTGGAGTCCTTCCTGAGGAAATGGCAAGTGGTCTCACAGACATTGCACCTATCTATGAATCAATGAATGAGCTCGAGCCAGCTGAATTTCAAGAGACAAGGGGTTTTCAAAAAGAACAATGTGTTGTCATTAAGGTTAGGACACTAACATACCGCCTAGCGCCGGAGCATCGGTATCCATGCCAGTACGACGACGGTTTCGACATCCTCAAGTTCATCAACGACAGTCAAAGAAGCATGTTCGAAGGCGCGAATCTCGGGCAGCGCTTTTTGGCCGAGGACAGCGCCGGCCAGAACATAGCGCACCACGTGGCGATCAGAGCGAGCAGGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

279

Amino Acids

31.05

Weight (kDa)

4.81

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 85 - 204 9.8e-07 Nephrocystin-3 TPR domain
TPR_12 PF13424 93 - 165 2.6e-10 Tetratricopeptide repeat
Abhydrolase_3 PF07859 207 - 277 1.5e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 262, 395
AccII CGCG 2 cut(s) 129, 752
AciI CCGC 1 cut(s) 655
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 2 cut(s) 774, 790
AcsI RAATTY 2 cut(s) 483, 587
AcvI CACGTG 1 cut(s) 811
AdeI CACNNNGTG 1 cut(s) 811
AfaI GTAC 3 cut(s) 9, 175, 689
AfeI AGCGCT 1 cut(s) 767
AfiI CCNNNNNNNGG 5 cut(s) 262, 395, 503, 517, 664
AgsI TTSAA 3 cut(s) 203, 593, 611
AjnI CCWGG 2 cut(s) 255, 502
AluBI AGCT 7 cut(s) 17, 41, 89, 109, 206, 574, 584
AluI AGCT 7 cut(s) 17, 41, 89, 109, 206, 574, 584
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 5 cut(s) 288, 372, 464, 539, 590
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 2 cut(s) 575, 758
Aor51HI AGCGCT 1 cut(s) 767
AoxI GGCC 2 cut(s) 774, 790
ApeKI GCWGC 4 cut(s) 86, 89, 206, 763
ApoI RAATTY 2 cut(s) 483, 587
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AspLEI GCGC 5 cut(s) 664, 752, 768, 788, 805
AsuII TTCGAA 2 cut(s) 481, 744
AvaI CYCGRG 2 cut(s) 575, 758
AxyI CCTNAGG 1 cut(s) 516
BanII GRGCYC 1 cut(s) 576
BbrPI CACGTG 1 cut(s) 811
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 4 cut(s) 76, 98, 193, 775
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 257, 504
BciVI GTATCC 1 cut(s) 687
BcoDI GTCTC 5 cut(s) 288, 372, 464, 539, 590
BfaI CTAG 5 cut(s) 110, 372, 416, 659, 835
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 3 cut(s) 665, 769, 789
BfuI GTATCC 1 cut(s) 687
BglI GCCNNNNNGGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 421
BisI GCNGC 4 cut(s) 87, 90, 207, 764
BlsI GCNGC 4 cut(s) 88, 91, 208, 765
Bme1390I CCNGG 2 cut(s) 257, 504
BmeT110I CYCGRG 2 cut(s) 575, 758
BmrFI CCNGG 2 cut(s) 257, 504
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 101, 679
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 525
Bpu14I TTCGAA 2 cut(s) 481, 744
BpuEI CTTGAG 2 cut(s) 233, 695
BsaAI YACGTR 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 777
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 395, 503, 517, 664
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 2 cut(s) 316, 685
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 257, 504
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 3 cut(s) 385, 408, 705
BseLI CCNNNNNNNGG 5 cut(s) 262, 395, 503, 517, 664
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 18, 507
BseNI ACTGG 2 cut(s) 316, 685
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 4 cut(s) 76, 98, 193, 775
Bsh1236I CGCG 2 cut(s) 129, 752
BshFI GGCC 2 cut(s) 776, 792
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 2 cut(s) 575, 758
BsiSI CCGG 2 cut(s) 665, 789
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 5 cut(s) 262, 395, 503, 517, 664
BsmAI GTCTC 5 cut(s) 288, 372, 464, 539, 590
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 2 cut(s) 776, 792
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 2 cut(s) 575, 758
Bsp119I TTCGAA 2 cut(s) 481, 744
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 3 cut(s) 366, 421, 816
BspACI CCGC 1 cut(s) 655
BspANI GGCC 2 cut(s) 776, 792
BspCNI CTCAG 2 cut(s) 19, 508
BspFNI CGCG 2 cut(s) 129, 752
BspPI GGATC 1 cut(s) 374
BspQI GCTCTTC 1 cut(s) 483
BspT104I TTCGAA 2 cut(s) 481, 744
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 2 cut(s) 316, 685
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 3 cut(s) 366, 421, 816
Bst2UI CCWGG 2 cut(s) 257, 504
Bst4CI ACNGT 2 cut(s) 698, 728
Bst6I CTCTTC 1 cut(s) 483
BstBAI YACGTR 1 cut(s) 811
BstBI TTCGAA 2 cut(s) 481, 744
BstC8I GCNNGC 5 cut(s) 232, 582, 790, 826, 830
BstDEI CTNAG 2 cut(s) 27, 516
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 3 cut(s) 385, 408, 705
BstFNI CGCG 2 cut(s) 129, 752
BstH2I RGCGCY 3 cut(s) 665, 769, 789
BstHHI GCGC 5 cut(s) 664, 752, 768, 788, 805
BstKTI GATC 3 cut(s) 369, 424, 819
BstMAI GTCTC 5 cut(s) 288, 372, 464, 539, 590
BstMBI GATC 3 cut(s) 366, 421, 816
BstMWI GCNNNNNNNGC 4 cut(s) 236, 245, 335, 821
BstNI CCWGG 2 cut(s) 257, 504
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 2 cut(s) 255, 502
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 2 cut(s) 129, 752
BstV1I GCAGC 4 cut(s) 76, 98, 193, 775
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 516
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 2 cut(s) 776, 792
BtsCI GGATG 3 cut(s) 385, 408, 705
Cac8I GCNNGC 5 cut(s) 232, 582, 790, 826, 830
CfoI GCGC 5 cut(s) 664, 752, 768, 788, 805
Cfr10I RCCGGY 1 cut(s) 788
Csp6I GTAC 3 cut(s) 8, 174, 688
CviAII CATG 5 cut(s) 180, 186, 499, 681, 739
CviQI GTAC 3 cut(s) 8, 174, 688
DdeI CTNAG 2 cut(s) 27, 516
DpnI GATC 3 cut(s) 368, 423, 818
DpnII GATC 3 cut(s) 366, 421, 816
DraIII CACNNNGTG 1 cut(s) 811
EaeI YGGCCR 2 cut(s) 774, 790
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 767
Eco53kI GAGCTC 1 cut(s) 574
Eco72I CACGTG 1 cut(s) 811
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 2 cut(s) 575, 758
EcoICRI GAGCTC 1 cut(s) 574
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 255, 502
EcoT38I GRGCYC 1 cut(s) 576
FaeI CATG 5 cut(s) 183, 189, 502, 684, 742
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 179, 185, 498, 680, 738
Fnu4HI GCNGC 4 cut(s) 87, 90, 207, 764
FokI GGATG 3 cut(s) 372, 395, 692
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 4 cut(s) 87, 90, 207, 764
FspBI CTAG 5 cut(s) 110, 372, 416, 659, 835
GlaI GCGC 5 cut(s) 663, 751, 767, 787, 804
GluI GCNGC 4 cut(s) 87, 90, 207, 764
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 3 cut(s) 665, 769, 789
HaeIII GGCC 2 cut(s) 776, 792
HapII CCGG 2 cut(s) 665, 789
HhaI GCGC 5 cut(s) 664, 752, 768, 788, 805
Hin1II CATG 5 cut(s) 183, 189, 502, 684, 742
Hin6I GCGC 5 cut(s) 662, 750, 766, 786, 803
HinP1I GCGC 5 cut(s) 662, 750, 766, 786, 803
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 8 cut(s) 69, 147, 217, 272, 452, 507, 560, 754
HpaII CCGG 2 cut(s) 665, 789
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 155, 322, 821
Hpy188III TCNNGA 3 cut(s) 212, 515, 593
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 3 cut(s) 69, 695, 698
HpyAV CCTTC 3 cut(s) 340, 521, 740
HpyCH4III ACNGT 2 cut(s) 698, 728
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 3 cut(s) 86, 92, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 245, 335, 821
HpyF3I CTNAG 2 cut(s) 27, 516
HpySE526I ACGT 1 cut(s) 810
Hsp92II CATG 5 cut(s) 183, 189, 502, 684, 742
HspAI GCGC 5 cut(s) 662, 750, 766, 786, 803
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Kzo9I GATC 3 cut(s) 366, 421, 816
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 4 cut(s) 76, 98, 193, 775
LweI GCATC 2 cut(s) 101, 679
MaeI CTAG 5 cut(s) 110, 372, 416, 659, 835
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 4 cut(s) 22, 49, 160, 445
MalI GATC 3 cut(s) 368, 423, 818
MboI GATC 3 cut(s) 366, 421, 816
MboII GAAGA 2 cut(s) 113, 470
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 4 cut(s) 78, 288, 483, 587
MlyI GAGTC 2 cut(s) 78, 516
MnlI CCTC 7 cut(s) 22, 259, 319, 368, 511, 719, 772
MroNI GCCGGC 1 cut(s) 788
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 184
MspA1I CMGCKG 2 cut(s) 89, 584
MspI CCGG 2 cut(s) 665, 789
MspR9I CCNGG 2 cut(s) 257, 504
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 2 cut(s) 257, 504
MvnI CGCG 2 cut(s) 129, 752
MwoI GCNNNNNNNGC 4 cut(s) 236, 245, 335, 821
NaeI GCCGGC 1 cut(s) 790
NdeII GATC 3 cut(s) 366, 421, 816
NgoMIV GCCGGC 1 cut(s) 788
NlaIII CATG 5 cut(s) 183, 189, 502, 684, 742
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 742
NspV TTCGAA 2 cut(s) 481, 744
PaeR7I CTCGAG 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 699
PdiI GCCGGC 1 cut(s) 790
PfeI GAWTC 6 cut(s) 147, 217, 272, 452, 560, 754
PflMI CCANNNNNTGG 2 cut(s) 262, 395
PkrI GCNGC 4 cut(s) 88, 91, 208, 765
PleI GAGTC 2 cut(s) 77, 515
PmaCI CACGTG 1 cut(s) 811
PmlI CACGTG 1 cut(s) 811
PpsI GAGTC 2 cut(s) 77, 515
Ppu21I YACGTR 1 cut(s) 811
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 255, 502
PspCI CACGTG 1 cut(s) 811
PspGI CCWGG 2 cut(s) 255, 502
PspXI VCTCGAGB 1 cut(s) 575
PsuI RGATCY 1 cut(s) 421
PvuII CAGCTG 2 cut(s) 89, 584
RsaI GTAC 3 cut(s) 9, 175, 689
RsaNI GTAC 3 cut(s) 8, 174, 688
RseI CAYNNNNRTG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 4 cut(s) 87, 90, 207, 764
Sau3AI GATC 3 cut(s) 366, 421, 816
SchI GAGTC 2 cut(s) 78, 516
ScrFI CCNGG 2 cut(s) 257, 504
SduI GDGCHC 1 cut(s) 576
SfaNI GCATC 2 cut(s) 101, 679
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 575
SfuI TTCGAA 2 cut(s) 481, 744
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 3 cut(s) 212, 575, 710
SmoI CTYRAG 3 cut(s) 212, 575, 710
Sse9I AATT 4 cut(s) 78, 288, 483, 587
SsiI CCGC 1 cut(s) 655
SspMI CTAG 5 cut(s) 110, 372, 416, 659, 835
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 255, 502
TaaI ACNGT 2 cut(s) 698, 728
TaiI ACGT 1 cut(s) 813
TaqI TCGA 4 cut(s) 481, 576, 702, 744
TasI AATT 4 cut(s) 78, 288, 483, 587
TfiI GAWTC 6 cut(s) 147, 217, 272, 452, 560, 754
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 4 cut(s) 86, 89, 206, 763
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 6 cut(s) 139, 397, 504, 573, 581, 706
TspGWI ACGGA 2 cut(s) 401, 464
Van91I CCANNNNNTGG 2 cut(s) 262, 395
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 2 cut(s) 483, 587
XceI RCATGY 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 575
XspI CTAG 5 cut(s) 110, 372, 416, 659, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.