Rmu_ssc0000454.1_g000015

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000454.1
OG0017403
Physical Location & Seq
Reverse (-)
60998 .. 61809
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000454.1_g000015.1.cds

Sequence Viewer

Length: 507 bp
atggaaaggtttgacaagattttgaaccaaggaggagtggatcatgttgcttcaataatggtggcaagcgatgtggcttcacgagagtttgatatcactcatgttgcacatgtcatgaattttgacttttcaaaaagcatggatgattatgttcacaggattggtcatactggtatggtagtggagtttgctcaacaatcattgtactatggtggagtccaaagacaaaggtactgtagcagaaaccttgacgaccttgcattgattcctccaaatcgattcttgggaatagtggcaaacattggtacgtcctgcttatgtaatcaaatctttgaagctgctcttgagcatcttgttttagccagcagggctatggtggcaaatgcccaggaagtggaggtagactctgttgacagcaaaattggagacacatacttacccttgtccgggtatgatgaggctgtttttgcttatgagaaggcgctaaatgtgtttaccgctaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

168

Amino Acids

18.66

Weight (kDa)

4.97

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AccI GTMKAC 1 cut(s) 402
AciI CCGC 1 cut(s) 498
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 3 cut(s) 206, 233, 307
AfiI CCNNNNNNNGG 3 cut(s) 394, 446, 447
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 4 cut(s) 25, 54, 132, 335
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 448
BauI CACGAG 1 cut(s) 81
BbvI GCAGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 389
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 389, 448
BmrFI CCNGG 2 cut(s) 389, 448
BmsI GCATC 1 cut(s) 358
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 448
Bsa29I ATCGAT 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 28, 387
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 446, 447
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 389
BseCI ATCGAT 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 28, 387
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 394, 446, 447
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 325
BshVI ATCGAT 1 cut(s) 277
BsiSI CCGG 1 cut(s) 447
BslI CCNNNNNNNGG 3 cut(s) 394, 446, 447
BsmAI GTCTC 1 cut(s) 420
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 498
BspDI ATCGAT 1 cut(s) 277
BspHI TCATGA 1 cut(s) 114
BspPI GGATC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 28, 387
BssMI GATC 1 cut(s) 40
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 67, 364
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 3 cut(s) 368, 377, 467
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 387, 446
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 277
BsuTUI ATCGAT 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 67, 364
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 484
ClaI ATCGAT 1 cut(s) 277
Csp6I GTAC 3 cut(s) 205, 232, 306
CspCI CAANNNNNGTGG 4 cut(s) 42, 54, 77, 89
CviAII CATG 5 cut(s) 44, 101, 110, 115, 139
CviJI RGCY 5 cut(s) 77, 338, 362, 371, 461
CviKI_1 RGCY 5 cut(s) 77, 338, 362, 371, 461
CviQI GTAC 3 cut(s) 205, 232, 306
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 28
Eco32I GATATC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 387
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 5 cut(s) 47, 104, 113, 118, 142
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 5 cut(s) 43, 100, 109, 114, 138
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 339
GlaI GCGC 1 cut(s) 483
GluI GCNGC 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 485
HapII CCGG 1 cut(s) 447
HhaI GCGC 1 cut(s) 484
Hin1II CATG 5 cut(s) 47, 104, 113, 118, 142
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 216, 265, 279, 404
HpaII CCGG 1 cut(s) 447
Hpy166II GTNNAC 4 cut(s) 154, 403, 412, 495
Hpy188III TCNNGA 3 cut(s) 81, 115, 344
Hpy8I GTNNAC 4 cut(s) 154, 403, 412, 495
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 107, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 377, 467
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 5 cut(s) 47, 104, 113, 118, 142
HspAI GCGC 1 cut(s) 482
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 142, 156, 325, 352, 374, 376, 401, 460
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MluCI AATT 2 cut(s) 118, 420
MlyI GAGTC 2 cut(s) 225, 398
MnlI CCTC 4 cut(s) 26, 279, 391, 451
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 2 cut(s) 389, 448
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 368, 377, 467
NciI CCSGG 1 cut(s) 448
NdeII GATC 1 cut(s) 40
NlaIII CATG 5 cut(s) 47, 104, 113, 118, 142
NspI RCATGY 1 cut(s) 113
PagI TCATGA 1 cut(s) 114
PciI ACATGT 1 cut(s) 109
PfeI GAWTC 2 cut(s) 265, 279
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 2 cut(s) 224, 398
PpsI GAGTC 2 cut(s) 224, 398
PscI ACATGT 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
RsaI GTAC 3 cut(s) 206, 233, 307
RsaNI GTAC 3 cut(s) 205, 232, 306
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 2 cut(s) 225, 398
ScrFI CCNGG 2 cut(s) 389, 448
SetI ASST 7 cut(s) 11, 233, 249, 258, 311, 340, 402
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 118, 420
SsiI CCGC 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 387, 446
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 277
TasI AATT 2 cut(s) 118, 420
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 2 cut(s) 265, 279
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 394
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.