Rw1G000830

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017403
Physical Location & Seq
Reverse (-)
1160293 .. 1160706
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000830.1

Sequence Viewer

Length: 414 bp
ATGGATGAAGAAGATGATATGGAAGAGATTGGATTGACCTCCATGAAGATTAAATTTAGAAGTTCTTTCAAGCTTGAGTTGTGGGATTCTTGTGATGTAATTGCACTCAAATCCTCAGCACTGCAGATGTGGTTGGTTGGTTATCCAGATACGGTAAAGGTTTTCATAAAGAAGCAAATTCAGTTCTTGGGTAGCCAGAAGAAGGTTCAAGGTGTGAAAAAATCTGCCACAGAAGCTCCGGGTGTTGATGTTGTTAGGCATTTCTTGACAAAGAGTGTTGATGGCACTGCTCTGATGGACGCTATTTTGGGTGCAATGTATGCTCAATCAAAGGCTTATGGTCATGCTACTGTTATGGTTGGAAGGATGGCAAGGGAGGATCCAAAGGGGAATCTTTTGCAAGTGGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

137

Amino Acids

15.17

Weight (kDa)

7.81

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FACT-Spt16_Nlob PF14826 34 - 133 4.3e-14 FACT complex subunit SPT16 N-terminal lobe domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 374, 387
AcsI RAATTY 2 cut(s) 53, 177
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 70, 209
AluBI AGCT 2 cut(s) 73, 236
AluI AGCT 2 cut(s) 73, 236
AlwI GGATC 2 cut(s) 374, 387
ApoI RAATTY 2 cut(s) 53, 177
AsuC2I CCSGG 1 cut(s) 240
BamHI GGATCC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 275, 289, 361
BcnI CCSGG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 321
BseGI GGATG 2 cut(s) 10, 372
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 202
Bsp143I GATC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 381
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 2 cut(s) 374, 387
BsrDI GCAATG 1 cut(s) 321
BssMI GATC 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 154, 352
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 2 cut(s) 10, 372
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 2 cut(s) 233, 320
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtsCI GGATG 2 cut(s) 10, 372
BtsI GCAGTG 2 cut(s) 119, 285
BtsIMutI CAGTG 2 cut(s) 119, 285
CseI GACGC 1 cut(s) 308
CviAII CATG 2 cut(s) 43, 344
CviJI RGCY 4 cut(s) 73, 195, 236, 335
CviKI_1 RGCY 4 cut(s) 73, 195, 236, 335
DdeI CTNAG 1 cut(s) 115
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
FaeI CATG 2 cut(s) 46, 347
FaiI YATR 7 cut(s) 20, 44, 167, 321, 339, 345, 356
FatI CATG 2 cut(s) 42, 343
FokI GGATG 2 cut(s) 17, 379
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 46, 347
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 86, 391
HpaII CCGG 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 2 cut(s) 146, 265
HpyAV CCTTC 2 cut(s) 196, 357
HpyCH4III ACNGT 2 cut(s) 154, 352
HpyCH4V TGCA 4 cut(s) 104, 124, 314, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 320
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 2 cut(s) 46, 347
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 159, 209, 252
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 5 cut(s) 20, 23, 35, 58, 211
MflI RGATCY 1 cut(s) 379
MluCI AATT 3 cut(s) 53, 99, 177
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 3 cut(s) 49, 124, 370
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 233, 320
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 46, 347
NlaIV GGNNCC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 86, 391
PspN4I GGNNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 379
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 240
SetI ASST 6 cut(s) 41, 75, 162, 207, 214, 238
SfcI CTRYAG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 53, 99, 177
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 154, 352
TasI AATT 3 cut(s) 53, 99, 177
TfiI GAWTC 2 cut(s) 86, 391
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 2 cut(s) 126, 292
TspDTI ATGAA 3 cut(s) 21, 59, 154
TspRI CASTG 2 cut(s) 126, 292
XapI RAATTY 2 cut(s) 53, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.