Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017403

Physical Location & Seq

Genomic Coordinates Reverse (-)

37264077 .. 37265812

Gene Structure 1736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGTTGGTTGGTTATCCAGATACAGTAAGGGTTTTCATGAAGAAGCAAATTCAGTTCTTGGGTAGCCAGAAGAAGGCTCAAGGTGTGAAAAAATCTGCCACAGAAGCTCCGGGTGTTGATGTTGTTAGGCATAAGAAGATAAAAAGTGTTGATGGCACTGCTCTGATGGACGCTATTTTGGGTGCAATGTATGCTCAATCCAAGGCTTATGGTCATGATACTGTTATGGTTGGAAGGATGGCAAGGGAGGATCCAAAGGGGAATCTTCTGCAATGGTGGTTTGAGAAGCTGAAGAGTGCAATTGTTCAGTTTGCGGCTCTTGAGCATCTTGTTTTAGCCAGCAGGGCTATGGTGGTCAATGGCGAGGAAGTGGAGGTAAACTCTGTTGACAGCAAAATTGGAGACACATACTTACCCTTGTCCAGGTATGATGAGGCTGTTTTTGCTTATGAGAAGGTGTTAAATGTGTTTAAGACCACTAAAGGAGAGAATCATCTATCTGTTGGTTCAGTTTTCATCCGTCTGGCAGATTTGTATAACAGGACAGGGAAGGTCTTGGAGATTTGCGGTTCCGCCATTGAAGAAGAAGAAGAAGAAGAAGAAGCTCTTTTCACCGTTGAAGGGTTTAAGAAATTTTCTTTGTTAGGGTTTTGGAGTTTAGATGGGAGATACACCAAACGATGCCGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

7.71

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FACT-Spt16_Nlob	PF14826	1 - 102	2.8e-12	FACT complex subunit SPT16 N-terminal lobe domain
TPR_12	PF13424	128 - 185	3.1e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017403)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g16710
rosa_laevigata	RLG00000002627 RLG00000015551 RLG00000018595 RLG00000028922
rosa_multiflora	Rmu_co8381587.1_g000001 Rmu_sc0004848.1_g000009 Rmu_ssc0000454.1_g000015
rosa_roxburghii	Rroxscaffold_3G00224550 Rroxscaffold_3G00224590
rosa_samantha	Rh1AG015700 Rh2AG138900
rosa_wichuraiana	Rw1G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	317, 570, 576
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	2 cut(s)	51, 635
AcuI	CTGAAG	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	76, 426, 624
AgsI	TTSAA	2 cut(s)	584, 623
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	3 cut(s)	110, 292, 608
AluI	AGCT	3 cut(s)	110, 292, 608
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	248, 261
ApoI	RAATTY	2 cut(s)	51, 635
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	253
BccI	CCATC	4 cut(s)	149, 163, 235, 659
BceAI	ACGGC	1 cut(s)	672
BciT130I	CCWGG	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	114, 427
BmiI	GGNNCC	2 cut(s)	255, 574
BmrFI	CCNGG	2 cut(s)	114, 427
BmsI	GCATC	2 cut(s)	337, 674
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpuEI	CTTGAG	2 cut(s)	66, 344
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 426, 624
Bse3DI	GCAATG	2 cut(s)	195, 281
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	246, 519
BseLI	CCNNNNNNNGG	3 cut(s)	76, 426, 624
BseMI	GCAATG	2 cut(s)	195, 281
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	76, 426, 624
BsmAI	GTCTC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	3 cut(s)	317, 570, 576
BspHI	TCATGA	2 cut(s)	39, 217
BspLI	GGNNCC	2 cut(s)	255, 574
BspPI	GGATC	2 cut(s)	248, 261
BsrDI	GCAATG	2 cut(s)	195, 281
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	3 cut(s)	28, 226, 619
Bst6I	CTCTTC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	343
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	246, 519
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 194, 347, 446
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	112, 425
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	246, 519
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	343
CciI	TCATGA	2 cut(s)	39, 217
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	40, 218
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	43, 221
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FatI	CATG	2 cut(s)	39, 217
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	253, 506
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	43, 221
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	265, 493
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	2 cut(s)	382, 391
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	4 cut(s)	20, 40, 218, 323
Hpy8I	GTNNAC	2 cut(s)	382, 391
HpyAV	CCTTC	5 cut(s)	70, 231, 451, 547, 617
HpyCH4III	ACNGT	3 cut(s)	28, 226, 619
HpyCH4V	TGCA	3 cut(s)	188, 274, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 194, 347, 446
Hsp92II	CATG	2 cut(s)	43, 221
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	115
LweI	GCATC	2 cut(s)	337, 674
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	4 cut(s)	51, 303, 399, 635
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	4 cut(s)	244, 361, 370, 430
MseI	TTAA	3 cut(s)	464, 474, 630
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	114, 427
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	4 cut(s)	107, 194, 347, 446
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	43, 221
NlaIV	GGNNCC	2 cut(s)	255, 574
PagI	TCATGA	2 cut(s)	39, 217
PfeI	GAWTC	2 cut(s)	265, 493
PkrI	GCNGC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	255, 574
PsuI	RGATCY	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	464, 474, 630
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	114, 427
SetI	ASST	8 cut(s)	88, 112, 294, 381, 431, 462, 558, 610
SfaNI	GCATC	2 cut(s)	337, 674
SmlI	CTYRAG	2 cut(s)	81, 323
SmoI	CTYRAG	2 cut(s)	81, 323
Sse9I	AATT	4 cut(s)	51, 303, 399, 635
SsiI	CCGC	3 cut(s)	317, 570, 576
StyD4I	CCNGG	2 cut(s)	112, 425
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	28, 226, 619
TasI	AATT	4 cut(s)	51, 303, 399, 635
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	265, 493
Tru1I	TTAA	3 cut(s)	464, 474, 630
Tru9I	TTAA	3 cut(s)	464, 474, 630
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	28, 56, 508
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	424
XapI	RAATTY	2 cut(s)	51, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.