Rh1AG015700

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017403
Physical Location & Seq
Reverse (-)
2688124 .. 2688417
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG015700.1

Sequence Viewer

Length: 294 bp
ATGTGGTTGTTTGGTTATCCAGATACGGTAAAGGTTTTCATAAAGAAGCAAATTCAGTTCTTGGGTAGCCAAAAGAAGGTTCAAGGTGTGAAAAAATCTGCCACAGAAGCTCCGGGTGTTGATGTTGTTAGGCATTTCTTGACAAAGAGTGTTGATGGCACTGCTCTGATGGACGCTATTTTGGGTGCAATGTATGCTCAATCAAAGGCTTATGGTCATTACTGTTATGGTTGGAAGGATGGCAAGGGAGGATCCAAAGGGGAATCTTTTACAGGTGGTGGTTTGAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

97

Amino Acids

10.51

Weight (kDa)

9.64

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FACT-Spt16_Nlob PF14826 1 - 74 4.4e-10 FACT complex subunit SPT16 N-terminal lobe domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 246, 259
AcsI RAATTY 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 110, 291
AluI AGCT 2 cut(s) 110, 291
AlwI GGATC 2 cut(s) 246, 259
ApoI RAATTY 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 114
BamHI GGATCC 1 cut(s) 251
BccI CCATC 3 cut(s) 149, 163, 233
BcnI CCSGG 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 195
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 76
Bsp143I GATC 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 2 cut(s) 246, 259
BsrDI GCAATG 1 cut(s) 195
BssMI GATC 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 28, 224
BstAPI GCANNNNNTGC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 254
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 107, 194
BstSCI CCNGG 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
CseI GACGC 1 cut(s) 182
CviJI RGCY 4 cut(s) 69, 110, 209, 291
CviKI_1 RGCY 4 cut(s) 69, 110, 209, 291
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
FaiI YATR 4 cut(s) 41, 195, 213, 228
FokI GGATG 1 cut(s) 251
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 20, 139
HpyAV CCTTC 2 cut(s) 70, 229
HpyCH4III ACNGT 2 cut(s) 28, 224
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 194
Kzo9I GATC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 33, 126, 258
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MflI RGATCY 1 cut(s) 251
MluCI AATT 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 1 cut(s) 242
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 107, 194
NciI CCSGG 1 cut(s) 114
NdeII GATC 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 253
PsuI RGATCY 1 cut(s) 251
Sau3AI GATC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 36, 81, 88, 112, 277, 293
SgeI CNNG 8 cut(s) 32, 73, 95, 125, 126, 151, 256, 285
Sse9I AATT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 28, 224
TasI AATT 1 cut(s) 51
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.