RLG00000018595

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017403
Physical Location & Seq
Forward (+)
32331732 .. 32332707
976 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018595

Sequence Viewer

Length: 495 bp
ATGCCAAATGGCCAGGAAGTGGAGGTAAATTCTTTTGACAGCAAAATTGGAGACACATACTTACCCTTGTCTGGGTATGATGAGGCTGTTTTTGCTTATAAGAAGGTGCTAAATGTATTTAAGACCAGTAAAGGAGAGAATCATCCATCTATTGGTTCAGTTTTCATCCGACTAGTGGATTTGTATAACAGGACAGGTAAAGTTACGGAATCAATATCATACCGTGAGAATGCTCTTCGAGGACATAGTGTCAATTACTTGAAGGTTGTGGCATCTGTGTGGTTCATACCTATTGCCAAGCTATTTACTACATACTACGAGTTTCTCACTAGACTCATAAACACCTTCTTCTTCTGTCCCAGGGAGGTCCTCCCCCTCATCCAGGCGCTGCCTTTTAGAGTCTCGGAGGAGGGACTAATCAATGTCACCGGCGCCTCGCTTACGTTGCCGAGAACCTTCGCCTCCCACATTCAGCCCCAACATTCTCTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

8.67

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 2 cut(s) 19, 152
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 432
AfiI CCNNNNNNNGG 6 cut(s) 19, 71, 72, 152, 175, 382
AgsI TTSAA 1 cut(s) 262
AhdI GACNNNNNGTC 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 172
AjnI CCWGG 3 cut(s) 12, 359, 381
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 2 cut(s) 45, 406
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 2 cut(s) 388, 434
AspS9I GGNCC 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 367
BalI TGGCCA 1 cut(s) 12
BanI GGYRCC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 375
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 3 cut(s) 14, 361, 383
BcoDI GTCTC 2 cut(s) 45, 406
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 2 cut(s) 173, 330
BfoI RGCGCY 2 cut(s) 389, 435
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 3 cut(s) 14, 361, 383
Bme18I GGWCC 1 cut(s) 367
BmeRI GACNNNNNGTC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 3 cut(s) 14, 361, 383
BmsI GCATC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 359, 360
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 71, 72, 152, 175, 382
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 126
BseBI CCWGG 3 cut(s) 14, 361, 383
BseDI CCNNGG 2 cut(s) 359, 360
BseGI GGATG 3 cut(s) 142, 165, 378
BseLI CCNNNNNNNGG 6 cut(s) 19, 71, 72, 152, 175, 382
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 375
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 2 cut(s) 342, 426
BslI CCNNNNNNNGG 6 cut(s) 19, 71, 72, 152, 175, 382
BsmAI GTCTC 2 cut(s) 45, 406
BsmFI GGGAC 2 cut(s) 342, 426
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 1 cut(s) 12
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 433
BspQI GCTCTTC 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 359, 360
BssNI GRCGYC 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 14, 361, 383
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 3 cut(s) 142, 165, 378
BstH2I RGCGCY 2 cut(s) 389, 435
BstHHI GCGC 2 cut(s) 388, 434
BstMAI GTCTC 2 cut(s) 45, 406
BstMWI GCNNNNNNNGC 2 cut(s) 92, 445
BstNI CCWGG 3 cut(s) 14, 361, 383
BstSCI CCNGG 3 cut(s) 12, 359, 381
BstV1I GCAGC 1 cut(s) 375
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 142, 165, 378
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 2 cut(s) 388, 434
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 367
CviJI RGCY 4 cut(s) 12, 86, 301, 475
CviKI_1 RGCY 4 cut(s) 12, 86, 301, 475
DinI GGCGCC 1 cut(s) 433
DriI GACNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 240
Eam1105I GACNNNNNGTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 12, 359, 381
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
FaqI GGGAC 2 cut(s) 342, 426
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 3 cut(s) 129, 152, 365
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 2 cut(s) 173, 330
GlaI GCGC 2 cut(s) 387, 433
GluI GCNGC 1 cut(s) 389
HaeII RGCGCY 2 cut(s) 389, 435
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 429
HhaI GCGC 2 cut(s) 388, 434
Hin1I GRCGYC 1 cut(s) 432
Hin6I GCGC 2 cut(s) 386, 432
HinP1I GCGC 2 cut(s) 386, 432
HinfI GANTC 4 cut(s) 139, 209, 333, 399
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 170, 406
HpyAV CCTTC 4 cut(s) 97, 256, 355, 466
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 445
HpySE526I ACGT 1 cut(s) 443
Hsp92I GRCGYC 1 cut(s) 432
HspAI GCGC 2 cut(s) 386, 432
KasI GGCGCC 1 cut(s) 431
LguI GCTCTTC 1 cut(s) 240
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 173, 330
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 202, 424
MboII GAAGA 3 cut(s) 227, 340, 343
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 3 cut(s) 28, 45, 253
MluNI TGGCCA 1 cut(s) 12
Mly113I GGCGCC 1 cut(s) 432
MlyI GAGTC 2 cut(s) 327, 408
MmeI TCCRAC 1 cut(s) 193
Mox20I TGGCCA 1 cut(s) 12
MscI TGGCCA 1 cut(s) 12
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 12
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 3 cut(s) 14, 361, 383
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 3 cut(s) 14, 361, 383
MwoI GCNNNNNNNGC 2 cut(s) 92, 445
NarI GGCGCC 1 cut(s) 432
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 424
PasI CCCWGGG 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 240
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 139, 209
PflMI CCANNNNNTGG 2 cut(s) 19, 152
PkrI GCNGC 1 cut(s) 390
PleI GAGTC 2 cut(s) 327, 407
PluTI GGCGCC 1 cut(s) 435
PpsI GAGTC 2 cut(s) 327, 407
PpuMI RGGWCCY 1 cut(s) 367
PsiI TTATAA 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 3 cut(s) 12, 359, 381
PspGI CCWGG 3 cut(s) 12, 359, 381
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 1 cut(s) 367
PspPPI RGGWCCY 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 367
SchI GAGTC 2 cut(s) 327, 408
ScrFI CCNGG 3 cut(s) 14, 361, 383
SfaNI GCATC 1 cut(s) 281
SfoI GGCGCC 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 428
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 3 cut(s) 28, 45, 253
SspDI GGCGCC 1 cut(s) 431
SspMI CTAG 2 cut(s) 173, 330
StyD4I CCNGG 3 cut(s) 12, 359, 381
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 446
TaqI TCGA 1 cut(s) 238
TasI AATT 3 cut(s) 28, 45, 253
TfiI GAWTC 2 cut(s) 139, 209
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 154, 274
TspGWI ACGGA 1 cut(s) 221
Van91I CCANNNNNTGG 2 cut(s) 19, 152
VpaK11BI GGWCC 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 380
XapI RAATTY 1 cut(s) 28
XspI CTAG 2 cut(s) 173, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.