Rroxscaffold_3G00224590

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017403
Physical Location & Seq
Forward (+)
7770958 .. 7773994
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224590.1

Sequence Viewer

Length: 342 bp
ATGGTGAGACCAGTTCCAAGTTGGTCTCCAGATTTCCAGCTGCTTAAGGGGACAATTCTATACCTTTTCTCGATGGCTGTTTTTGCTTATGAGAAGGCGCTAAATGTGTTTAAGACCACTAAAGGAGAGAATCATCCATCTGCTGGTTTAGTTTTCATCCGTCTAGCAGATTTGTATAACATGACAGGTAAATTTACAAAATCAATATCGTACTATGAGAATGCTCTTCGAGGACATAGCGTCTATTACTTGAAGGTTGTGGCATCCGTGGTGATTGGATTTACTGGTTGTGGCATCTGTGGTGATTGGATTTACTGTTTTGGTTACTTGGCATTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

113

Amino Acids

12.7

Weight (kDa)

8.77

Isoelectric Point (pI)

14.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 30 - 77 9.4e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 143
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 239
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 16, 283, 314
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 67, 145
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmeRI GACNNNNNGTC 1 cut(s) 239
BmsI GCATC 2 cut(s) 272, 303
BpmI CTGGAG 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 11, 289
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 3 cut(s) 133, 156, 263
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 11, 289
BseXI GCAGC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 226
Bso31I GGTCTC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 2 cut(s) 11, 289
BssECI CCNNGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 133, 156, 263
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 133, 156, 263
CfoI GCGC 1 cut(s) 100
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 181
CviJI RGCY 2 cut(s) 40, 77
CviKI_1 RGCY 2 cut(s) 40, 77
CviQI GTAC 1 cut(s) 211
DriI GACNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 231
Eam1105I GACNNNNNGTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 30
FaeI CATG 1 cut(s) 184
FaiI YATR 6 cut(s) 61, 90, 177, 182, 216, 237
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 3 cut(s) 120, 143, 250
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 101
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 130
HphI GGTGA 3 cut(s) 16, 283, 314
Hpy188III TCNNGA 2 cut(s) 29, 70
HpyAV CCTTC 2 cut(s) 88, 247
HpyCH4III ACNGT 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 98
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 6 cut(s) 24, 42, 50, 129, 171, 270
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 2 cut(s) 272, 303
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 323
MboII GAAGA 1 cut(s) 218
MluCI AATT 2 cut(s) 54, 191
MnlI CCTC 1 cut(s) 224
MseI TTAA 3 cut(s) 45, 111, 340
MspA1I CMGCKG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 231
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 45, 111, 340
SatI GCNGC 1 cut(s) 41
SetI ASST 4 cut(s) 42, 66, 190, 258
SfaNI GCATC 2 cut(s) 272, 303
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 2 cut(s) 54, 191
SspMI CTAG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 71, 229
TasI AATT 2 cut(s) 54, 191
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 3 cut(s) 45, 111, 340
Tru9I TTAA 3 cut(s) 45, 111, 340
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 2 cut(s) 149, 256
Van91I CCANNNNNTGG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.