Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0017403

Physical Location & Seq

Genomic Coordinates Reverse (-)

19345339 .. 19347552

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAGTTTTATTATTAATTTCATTTTGTACTTAATAGTAATTATAAAGAGATTATGGATTAATATTTTCATCGACCTCAACGACGTCGTCAAGTCTTCATCCACAGCTCTCTCTCTCTCTCTCTGTTTCCATCTCTCAATTATTTGTAGTTCCTCTCTCAATCTTCTTAATCTTCACAGATTGATCGATCTAAACCTCTCATTTCGATCCAAATTCATCCTCCAATTCCCCCCAAATCAGCTTCACTTTTCTATTTTGGTACCAGTTTCAGAGACCCAATTGGCAAACGAGTCCTCCTCCGAATCCTCCACCAAAAGCTGGGTTTTTTCAGGTCAGGTTGTACAATCTATATCTGAAGTGTCATCAATGGCTGAGCAACGAAAAGGTAATGTCAAACCTGCGAATGGGAAGTCATCAGGAACCGCAACAGCGACCGCCAGTGCATATTCCATTGATCTCAATAACTTCAGCAAGCGGTTAAAGATGTTATATTCACATTGGAGGGAACATCGTAGTGATCTATGGGGTGAATCTGATGCACTTGCAATAGCAACTCCTCCAACTTCTGAGGATCTGCGGTATCTGAAATCCTCAGCAATGAATATCTGGTTGCTCGGTTACGAGTTTCCAGAAACTGTCATGGTTTTTGCAAAGAAGCAGATCCATGTTTTGTGTAGCCAGAAAAAGGCTTCTCTCCTTGATGTTGTGATAAAGCCTGCAAAAGAGGCTGTTGGTGTTGAAGTGGTGATGCATGTGAAACTCAAGGGCCAGGATGGAACCGGACTGATGGATAGCATATTCCGAGCTGTAAATGCCCACTCGAGCTCCGATGCTCCTGTTGTTGGACACATAGCAAGAGAGGCTCCTGAAGGGAAACTTTTGGAGACTTGGAGTGAGAAGTTGAAGAATGCTAATTTTGAGTTGAGTGATGTGACCAATGGGTTCTCAGACTTGTTTGCCGTCAAAGACCCTGTTGAGCTTACATATGTGAAGAAAGCGGCATACTTGACTTCGTCAGTGATGAAGACTTTTGTGGTACCTAAGCTTGAGAAGGTCATTGATGAGGAAAAGAAAATTTCCCATTCTTCATTGATGGATGACACGGAAAAGGTCATATTGGAGCCTGCAAAAATTAAGGTGAAGCTGACGGCAGCAAATGTTGATATTTGCTATCCTCCAATTTTTCAGAGTGGAGGACAATTTGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

404

Amino Acids

44.75

Weight (kDa)

8.18

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FACT-Spt16_Nlob	PF14826	151 - 314	5.1e-50	FACT complex subunit SPT16 N-terminal lobe domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017403)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g16710
rosa_laevigata	RLG00000002627 RLG00000015551 RLG00000018595 RLG00000028922
rosa_multiflora	Rmu_co8381587.1_g000001 Rmu_sc0004848.1_g000009 Rmu_ssc0000454.1_g000015
rosa_roxburghii	Rroxscaffold_3G00224550 Rroxscaffold_3G00224590
rosa_samantha	Rh1AG015700 Rh2AG138900
rosa_wichuraiana	Rw1G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	406
Acc65I	GGTACC	2 cut(s)	259, 1036
AccB1I	GGYRCC	2 cut(s)	259, 1036
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	5 cut(s)	423, 435, 475, 577, 998
AclWI	GGATC	3 cut(s)	201, 579, 655
AcsI	RAATTY	2 cut(s)	212, 1074
AcuI	CTGAAG	3 cut(s)	375, 451, 888
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	4 cut(s)	29, 261, 342, 1038
AfiI	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
AgsI	TTSAA	2 cut(s)	740, 904
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	8 cut(s)	107, 241, 318, 806, 825, 979, 1045, 1144
AluI	AGCT	8 cut(s)	107, 241, 318, 806, 825, 979, 1045, 1144
Alw21I	GWGCWC	1 cut(s)	827
Alw26I	GTCTC	2 cut(s)	266, 878
AlwI	GGATC	3 cut(s)	201, 579, 655
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	1 cut(s)	1151
ApoI	RAATTY	2 cut(s)	212, 1074
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AseI	ATTAAT	2 cut(s)	15, 60
Asp718I	GGTACC	2 cut(s)	259, 1036
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	3 cut(s)	539, 757, 1150
AvaI	CYCGRG	1 cut(s)	820
BanI	GGYRCC	2 cut(s)	259, 1036
BanII	GRGCYC	1 cut(s)	827
BbsI	GAAGAC	2 cut(s)	87, 1031
Bbv12I	GWGCWC	1 cut(s)	827
BbvCI	CCTCAGC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	1163
BccI	CCATC	4 cut(s)	138, 767, 781, 1087
BceAI	ACGGC	2 cut(s)	944, 1164
BciT130I	CCWGG	1 cut(s)	770
BcoDI	GTCTC	2 cut(s)	266, 878
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	999, 1152
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	2 cut(s)	1000, 1153
Bme1390I	CCNGG	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	3 cut(s)	526, 738, 820
BpiI	GAAGAC	2 cut(s)	87, 1031
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu10I	CCTNAGC	2 cut(s)	592, 1041
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	746, 1067
Bsa29I	ATCGAT	2 cut(s)	186, 1207
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	779
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 809, 839
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
Bse1I	ACTGG	2 cut(s)	263, 438
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	770
BseCI	ATCGAT	2 cut(s)	186, 1207
BseGI	GGATG	4 cut(s)	98, 216, 778, 1102
BseLI	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	4 cut(s)	363, 558, 606, 960
BseNI	ACTGG	2 cut(s)	263, 438
BseRI	GAGGAG	2 cut(s)	286, 546
BseXI	GCAGC	1 cut(s)	1163
BseYI	CCCAGC	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	2 cut(s)	259, 1036
BshVI	ATCGAT	2 cut(s)	186, 1207
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	827
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	1 cut(s)	780
BslI	CCNNNNNNNGG	4 cut(s)	318, 404, 685, 842
BsmAI	GTCTC	2 cut(s)	266, 878
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	1 cut(s)	768
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	423, 435, 475, 577, 998
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	4 cut(s)	364, 559, 605, 959
BspDI	ATCGAT	2 cut(s)	186, 1207
BspLI	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	3 cut(s)	201, 579, 655
BspT107I	GGYRCC	2 cut(s)	259, 1036
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	263, 438
BssMI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	1 cut(s)	637
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	473, 717, 1125
BstDEI	CTNAG	5 cut(s)	372, 567, 592, 946, 1041
BstF5I	GGATG	4 cut(s)	98, 216, 778, 1102
BstKTI	GATC	8 cut(s)	186, 190, 209, 457, 520, 574, 663, 1207
BstMAI	GTCTC	2 cut(s)	266, 878
BstMBI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	3 cut(s)	725, 812, 860
BstNI	CCWGG	1 cut(s)	770
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	1163
BstV2I	GAAGAC	2 cut(s)	87, 1031
BstX2I	RGATCY	2 cut(s)	571, 660
BstYI	RGATCY	2 cut(s)	571, 660
Bsu15I	ATCGAT	2 cut(s)	186, 1207
BsuRI	GGCC	1 cut(s)	768
BsuTUI	ATCGAT	2 cut(s)	186, 1207
BtsCI	GGATG	4 cut(s)	98, 216, 778, 1102
BtsIMutI	CAGTG	2 cut(s)	445, 1023
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	3 cut(s)	473, 717, 1125
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	766
ClaI	ATCGAT	2 cut(s)	186, 1207
Csp6I	GTAC	4 cut(s)	28, 260, 341, 1037
CviAII	CATG	3 cut(s)	640, 665, 752
CviQI	GTAC	4 cut(s)	28, 260, 341, 1037
DdeI	CTNAG	5 cut(s)	372, 567, 592, 946, 1041
DpnI	GATC	8 cut(s)	185, 189, 208, 456, 519, 573, 662, 1206
DpnII	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
Ecl136II	GAGCTC	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	825
Eco57I	CTGAAG	3 cut(s)	375, 451, 888
Eco88I	CYCGRG	1 cut(s)	820
EcoICRI	GAGCTC	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	827
FaeI	CATG	3 cut(s)	643, 668, 755
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FatI	CATG	3 cut(s)	639, 664, 751
FauNDI	CATATG	1 cut(s)	985
Fnu4HI	GCNGC	2 cut(s)	999, 1152
FokI	GGATG	4 cut(s)	85, 203, 785, 1109
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	2 cut(s)	999, 1152
GluI	GCNGC	2 cut(s)	999, 1152
GsaI	CCCAGC	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	643, 668, 755
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	3 cut(s)	290, 302, 530
HpaII	CCGG	1 cut(s)	780
HphI	GGTGA	3 cut(s)	539, 757, 1150
Hpy188III	TCNNGA	3 cut(s)	417, 629, 866
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	2 cut(s)	863, 1045
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	7 cut(s)	443, 539, 545, 650, 719, 751, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	725, 812, 860
HpyF3I	CTNAG	5 cut(s)	372, 567, 592, 946, 1041
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	643, 668, 755
KpnI	GGTACC	2 cut(s)	263, 1040
Kzo9I	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
LmnI	GCTCC	4 cut(s)	830, 838, 868, 1120
Lsp1109I	GCAGC	1 cut(s)	1163
LweI	GCATC	3 cut(s)	526, 738, 820
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	617, 931
MalI	GATC	8 cut(s)	185, 189, 208, 456, 519, 573, 662, 1206
MboI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
MboII	GAAGA	7 cut(s)	87, 155, 164, 916, 1003, 1036, 1077
MfeI	CAATTG	1 cut(s)	278
MflI	RGATCY	2 cut(s)	571, 660
MhlI	GDGCHC	1 cut(s)	827
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	584, 823
Mph1103I	ATGCAT	1 cut(s)	753
MseI	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
MslI	CAYNNNNRTG	1 cut(s)	513
MspI	CCGG	1 cut(s)	780
MspR9I	CCNGG	1 cut(s)	770
MunI	CAATTG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	3 cut(s)	725, 812, 860
NdeI	CATATG	1 cut(s)	985
NdeII	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
NlaIII	CATG	3 cut(s)	643, 668, 755
NlaIV	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
NmuCI	GTSAC	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	2 cut(s)	302, 530
PflFI	GACNNNGTC	2 cut(s)	86, 1012
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	1000, 1153
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	2 cut(s)	15, 60
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	768
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	6 cut(s)	261, 421, 778, 864, 1038, 1122
PspPI	GGNCC	1 cut(s)	766
PspXI	VCTCGAGB	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	571, 660
PsyI	GACNNNGTC	2 cut(s)	86, 1012
RsaI	GTAC	4 cut(s)	29, 261, 342, 1038
RsaNI	GTAC	4 cut(s)	28, 260, 341, 1037
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	827
SaqAI	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
SatI	GCNGC	2 cut(s)	999, 1152
Sau3AI	GATC	8 cut(s)	183, 187, 206, 454, 517, 571, 660, 1204
Sau96I	GGNCC	1 cut(s)	766
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	827
SfaNI	GCATC	3 cut(s)	526, 738, 820
Sfr274I	CTCGAG	1 cut(s)	820
SlaI	CTCGAG	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	3 cut(s)	761, 820, 1046
SmoI	CTYRAG	3 cut(s)	761, 820, 1046
SsiI	CCGC	5 cut(s)	423, 435, 475, 577, 998
SspI	AATATT	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	768
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	72, 186, 205, 821, 1207
TatI	WGTACW	2 cut(s)	27, 340
TauI	GCSGC	1 cut(s)	1001
TfiI	GAWTC	2 cut(s)	302, 530
Tru1I	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
Tru9I	TTAA	6 cut(s)	15, 32, 60, 168, 479, 1134
TscAI	CASTG	2 cut(s)	445, 1023
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	1 cut(s)	1151
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	7 cut(s)	10, 58, 87, 205, 614, 1037, 1077
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	2 cut(s)	445, 1023
Tth111I	GACNNNGTC	2 cut(s)	86, 1012
Van91I	CCANNNNNTGG	1 cut(s)	318
VspI	ATTAAT	2 cut(s)	15, 60
XapI	RAATTY	2 cut(s)	212, 1074
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	820
ZraI	GACGTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.