Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005682

Physical Location & Seq

Genomic Coordinates Forward (+)

20034103 .. 20035165

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAACTCACCAAGGAGGAAGAGGGTAAGCTTGCCGGCTACAAAGGAGACATCAATGAACTCGGGTCAGCGGAGAAGTTTGTGAAGGCGGTGCTTAGAGTACCTTTCGCTTTCCAACGAGTTGAAGCAATGCTTTACAGAGAAACGTTTGAAGATGAGGTGGTTCACCTTAGGAACTCCTTTTCAGTGCTAGAGGAGGCCTGTAAGGAACTGAGGTCAAGCAGGCTCTTCTTGAAGCTACTCGAAGCGGTGTTGAAAACAGGAAACCGGATGAATGTTGGAACGATCCGAGGAGGTGCCAGAGCATTCAAGCTAGACACTCTCCTCAAGCTCTCCGATGTAAAAGGAACCGATGGAAAAACCACATTGCTACATTTTGTTGTGCAAGAAATAATACGGGTAGAAGGGATTCGAGTTTCGGACAGCATCATGGGGAAGATCAGCCAGAAGAACAAAACCAAAACCCTAGAAGAGAAAGAAGAAGACTACAGAAGAATGGGGCTTGACCTAGTTTCCGGCCTCAGCACCGAGCTCTACAACGCGAAGAAAACAGCCACATTGGACTTGGATGTTCTTGCAAGCAGTGTATCAAATCTCTCCGATGGAATGGAAAAGATCAAACGTCTTATACACAAGGAGTTGTGCATGGATGAGAACAGTGGTAATTTGGTCAATTCGATGAAATCGTTCATATGCTATGCGGAGGAACGTTTGAGAGAGTTGCAGGGTGATGAGAGTAGGGTTCTGTCACAGGTGAAGGAGATAACAGAGTATTTCCATGGGAACGTGAGCAAGGAAGAAGCGAATCCGCTTCGGATTTTCGTGATTGTTAGGGACTTTTTGGGAATGTTGGATCATGTTTGTAAAGAGCTTAGAAGCTCAAAAGCACCACGCACTCCAAATCCTCTGGCTCCATTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

308

Amino Acids

34.76

Weight (kDa)

7.64

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05470
fragaria_vesca	FvH4_6g06480
malus_domestica	MD04G1201400.v1.1 MD12G1215100.v1.1
prunus_persica	Prupe.6G321600_v2.0.a1
pyrus_communis	pycom04g17740 pycom04g17750 pycom15g25860
rosa_chinensis	RchiOBHm_Chr3g0455601
rosa_laevigata	RLG00000025349
rosa_multiflora	Rmu_co8344379.1_g000001 Rmu_co8353267.1_g000001 Rmu_sc0000220.1_g000003 Rmu_sc0000223.1_g000001 Rmu_sc0005164.1_g000004 Rmu_sc0021585.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423690 Rroxscaffold_6G00424180
rosa_rugosa	Rorug03G0008600 Rorug03G0008600
rosa_samantha	Rh2AG197000 Rh2DG204900 Rh3AG067900 Rh3BG070500 Rh3CG068800 Rh3DG070400 Rh7DG489800
rosa_wichuraiana	Rw3G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	1 cut(s)	542
AciI	CCGC	5 cut(s)	71, 89, 248, 701, 809
AclI	AACGTT	2 cut(s)	146, 709
AclWI	GGATC	2 cut(s)	280, 861
AfaI	GTAC	1 cut(s)	102
AgsI	TTSAA	6 cut(s)	125, 152, 235, 256, 310, 919
AluBI	AGCT	7 cut(s)	31, 238, 313, 331, 532, 871, 879
AluI	AGCT	7 cut(s)	31, 238, 313, 331, 532, 871, 879
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	280, 861
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	198, 517
Asp700I	GAANNNNTTC	2 cut(s)	408, 686
AsuHPI	GGTGA	3 cut(s)	158, 740, 766
AvaI	CYCGRG	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	521
BccI	CCATC	2 cut(s)	347, 596
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	4 cut(s)	191, 314, 467, 509
BfmI	CTRYAG	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	298, 349, 912
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	12, 289, 778
BsaWI	WCCGGW	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	135, 365
BseDI	CCNNGG	3 cut(s)	12, 289, 778
BseGI	GGATG	3 cut(s)	276, 574, 655
BseMI	GCAATG	2 cut(s)	135, 365
BseMII	CTCAG	2 cut(s)	203, 535
BseRI	GAGGAG	3 cut(s)	209, 306, 314
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	200, 519
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	36, 268, 516
BslFI	GGGAC	1 cut(s)	848
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	200, 519
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	285, 438, 615, 853
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	5 cut(s)	71, 89, 248, 701, 809
BspANI	GGCC	2 cut(s)	200, 519
BspCNI	CTCAG	2 cut(s)	204, 534
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	3 cut(s)	298, 349, 912
BspPI	GGATC	2 cut(s)	280, 861
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	135, 365
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	12, 289, 778
BssMI	GATC	4 cut(s)	285, 438, 615, 853
BssT1I	CCWWGG	2 cut(s)	12, 778
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	3 cut(s)	15, 233, 465
BstC8I	GCNNGC	4 cut(s)	33, 37, 224, 580
BstDEI	CTNAG	5 cut(s)	95, 170, 212, 521, 872
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	3 cut(s)	276, 574, 655
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	4 cut(s)	288, 441, 618, 856
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	285, 438, 615, 853
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	200, 519
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	276, 574, 655
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	3 cut(s)	192, 589, 664
Cac8I	GCNNGC	4 cut(s)	33, 37, 224, 580
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	4 cut(s)	430, 646, 779, 857
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	5 cut(s)	95, 170, 212, 521, 872
DpnI	GATC	4 cut(s)	287, 440, 617, 855
DpnII	GATC	4 cut(s)	285, 438, 615, 853
Eam1104I	CTCTTC	3 cut(s)	15, 233, 465
EarI	CTCTTC	3 cut(s)	15, 233, 465
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	12, 778
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	532
Eco81I	CCTNAGG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	12, 778
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	12, 778
FaeI	CATG	4 cut(s)	433, 649, 782, 860
FaiI	YATR	8 cut(s)	431, 629, 647, 692, 694, 699, 780, 858
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	4 cut(s)	429, 645, 778, 856
FauNDI	CATATG	1 cut(s)	692
FokI	GGATG	3 cut(s)	283, 581, 662
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	4 cut(s)	191, 314, 467, 509
HaeIII	GGCC	2 cut(s)	200, 519
HapII	CCGG	3 cut(s)	36, 268, 516
Hin1II	CATG	4 cut(s)	433, 649, 782, 860
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	409, 805
HpaII	CCGG	3 cut(s)	36, 268, 516
HphI	GGTGA	3 cut(s)	158, 740, 766
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	5 cut(s)	290, 337, 421, 601, 816
Hpy188III	TCNNGA	2 cut(s)	232, 823
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	79, 398, 751
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	4 cut(s)	146, 622, 709, 786
HpyCH4V	TGCA	4 cut(s)	385, 578, 645, 724
HpyF3I	CTNAG	5 cut(s)	95, 170, 212, 521, 872
HpySE526I	ACGT	4 cut(s)	146, 622, 709, 786
Hsp92II	CATG	4 cut(s)	433, 649, 782, 860
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	285, 438, 615, 853
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	916
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	4 cut(s)	191, 314, 467, 509
MaeII	ACGT	4 cut(s)	146, 622, 709, 786
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	4 cut(s)	287, 440, 617, 855
MboI	GATC	4 cut(s)	285, 438, 615, 853
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	2 cut(s)	664, 673
MmeI	TCCRAC	3 cut(s)	139, 259, 831
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	2 cut(s)	408, 686
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	36, 268, 516
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	1 cut(s)	542
NaeI	GCCGGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	778
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	4 cut(s)	285, 438, 615, 853
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	4 cut(s)	433, 649, 782, 860
NlaIV	GGNNCC	3 cut(s)	298, 349, 912
NmuCI	GTSAC	1 cut(s)	747
PceI	AGGCCT	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	683
PctI	GAATGC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	408, 686
PfeI	GAWTC	2 cut(s)	409, 805
Psp124BI	GAGCTC	1 cut(s)	534
Psp1406I	AACGTT	2 cut(s)	146, 709
PspN4I	GGNNCC	3 cut(s)	298, 349, 912
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	233
Sau3AI	GATC	4 cut(s)	285, 438, 615, 853
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	664, 673
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	5 cut(s)	71, 89, 248, 701, 809
SspMI	CTAG	4 cut(s)	191, 314, 467, 509
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	12, 778
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	4 cut(s)	149, 625, 712, 789
TaqI	TCGA	3 cut(s)	243, 412, 677
TasI	AATT	2 cut(s)	664, 673
TfiI	GAWTC	2 cut(s)	409, 805
TscAI	CASTG	3 cut(s)	192, 589, 664
TseFI	GTSAC	1 cut(s)	747
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	4 cut(s)	72, 287, 679, 695
TspRI	CASTG	3 cut(s)	192, 589, 664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmnI	GAANNNNTTC	2 cut(s)	408, 686
XspI	CTAG	4 cut(s)	191, 314, 467, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.