Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005682

Physical Location & Seq

Genomic Coordinates Forward (+)

20525184 .. 20527030

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25860.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGCTCCAACTAAGGAAGAAGAAATTAAACTTCGAGACTACAAGGGTGACGTCTCAAAATTAGGGACTGCTGAACGCTTTCTGAAAGCTGTGCTCGATATCCCATTTGCCTTTAAGAGAGTTGAGGCAATGCTATACAGAGCTAATTTTGATACAGAAGTGAAGTACCTGAGAAAGTCCTTTCAAACGTTGGAGGAAGCAAGTGATGAACTAAAGAGCAGTCGATTATTCCTCAAACTCCTTGAAGCTGTCCTCAAGACAGGGAACCGAATGAATGTTGGGACTAATCGTGGTGATGCTAAATCTTTCAAACTTGATACACTTTTAAAACTAGTTGACGTAAAGGCAACAGATGGAAAGACCACATTGCTCCATTTTGTGGTCCAAGAGATCATAAAATCCGAAGGTGAAGTTGTTGATTCTACAAATGAGAATGCTAAAAACATGCCTGTCAATACCAAGGAAGATGGTTTCAGAAAGCAAGGATTGCAAATGGTTGCAGGGCTGGGCAGAGACCTCAGCAACGTCAAGAAAGCAGCAGGAATGGACTCAGATGTCCTAAGTAGCTACGTGTCGAAGCTTGAAATGGGGCTTCAGAAGGTCAAACTGGTTTTGCAGTATGAGAAGCCCGATATGCAAGGGAAATTCTTCAACTCGATGAAGGGATTTCTAAAAGAGGCCGAGGATGAAATTCTTAGGGTCAAGGCTGATGAAAGAAAGGCTTTAATTCTGGTGAAAGAGGTTACCGAATATTTTCATGGGGATACAACAAAGGAGGAAGCCCATCCTTTCAGAATCTTCATGATCGTGAGAGATTTTCTAAATGTACTGGACCAAGTTTGCAAGGAAGTGGGGATGCTGCAGGATAGAACACTGGTGGGCTCTGCTAGATCATTCCGCATAACATCAACCGCTCCTCTACCAGTTCTCAGCAGGTATAATGTGAGACAAGATAACAGTTCGGATGATGAAAGCTTGTCACCAAAGAAACGCAGGAGGGAGGGCACTCTTGATACTCTTTCCAGTATAAAGAAAATCCCAATTCAGACGGAGAGATTCCCCAGTCAGTTTATCAGGGTAGGATTCTTCATCTTGATCCAGAGTCCCACACATTTTGAAGGGAAAAGCAGAATGTTTTGGTGGTGGTGTCTGCATTTATTTCACAAATTAAAATATAGTTCAATAATAATTAGTAGCTATGTTTATTCTTCAGTATTGTCTTGTTTTTATTGTTTGATGAAAATAATTGAGGGGGAGGAGGAGACATATTGTCAATGTCTTCATATTTGTGGTCAAACTTTAAGGACAAACCAAGCTCCACTTCTTAACACTAACCACTTTAAGGAAAGCAAACAAAGACTACATCCTTCTAAAGATCTAATCACCTTTATGAAAAAGAAAAATAATTCTAGAAATAATGAAACTGTTTGTTGTTACACTGAAGGGAATCGAGCTCTGTATGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

490

Amino Acids

56.15

Weight (kDa)

9.15

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05470
fragaria_vesca	FvH4_6g06480
malus_domestica	MD04G1201400.v1.1 MD12G1215100.v1.1
prunus_persica	Prupe.6G321600_v2.0.a1
pyrus_communis	pycom04g17740 pycom04g17750 pycom15g25860
rosa_chinensis	RchiOBHm_Chr3g0455601
rosa_laevigata	RLG00000025349
rosa_multiflora	Rmu_co8344379.1_g000001 Rmu_co8353267.1_g000001 Rmu_sc0000220.1_g000003 Rmu_sc0000223.1_g000001 Rmu_sc0005164.1_g000004 Rmu_sc0021585.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423690 Rroxscaffold_6G00424180
rosa_rugosa	Rorug03G0008600 Rorug03G0008600
rosa_samantha	Rh2AG197000 Rh2DG204900 Rh3AG067900 Rh3BG070500 Rh3CG068800 Rh3DG070400 Rh7DG489800
rosa_wichuraiana	Rw3G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AatII	GACGTC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	924
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccBSI	CCGCTC	1 cut(s)	914
AciI	CCGC	2 cut(s)	898, 912
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	1 cut(s)	1090
AcsI	RAATTY	2 cut(s)	644, 690
AcuI	CTGAAG	3 cut(s)	578, 1194, 1461
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	167, 828
AfiI	CCNNNNNNNGG	2 cut(s)	379, 1342
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	7 cut(s)	185, 245, 310, 584, 652, 1118, 1182
AhdI	GACNNNNNGTC	1 cut(s)	1269
AhlI	ACTAGT	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	1305, 1337
AluBI	AGCT	9 cut(s)	89, 143, 248, 567, 580, 975, 1197, 1316, 1454
AluI	AGCT	9 cut(s)	89, 143, 248, 567, 580, 975, 1197, 1316, 1454
Alw21I	GWGCWC	2 cut(s)	96, 1456
Alw26I	GTCTC	5 cut(s)	30, 58, 507, 940, 1256
AlwI	GGATC	1 cut(s)	1090
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	2 cut(s)	536, 859
ApoI	RAATTY	2 cut(s)	644, 690
Asp700I	GAANNNNTTC	3 cut(s)	78, 647, 753
AspS9I	GGNCC	2 cut(s)	382, 832
AsuHPI	GGTGA	6 cut(s)	59, 305, 419, 745, 972, 1375
AvaII	GGWCC	2 cut(s)	382, 832
BaeGI	GKGCMC	1 cut(s)	1007
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BanII	GRGCYC	2 cut(s)	884, 1456
BbsI	GAAGAC	1 cut(s)	1271
Bbv12I	GWGCWC	2 cut(s)	96, 1456
BbvCI	CCTCAGC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	548, 846
BccI	CCATC	3 cut(s)	347, 461, 792
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	5 cut(s)	30, 58, 507, 940, 1256
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	3 cut(s)	332, 888, 1410
BfmI	CTRYAG	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	924
BfuI	GTATCC	1 cut(s)	757
BglII	AGATCT	1 cut(s)	1375
BisI	GCNGC	2 cut(s)	537, 860
BlsI	GCNGC	2 cut(s)	538, 861
Bme18I	GGWCC	2 cut(s)	382, 832
BmeRI	GACNNNNNGTC	1 cut(s)	1269
BmgT120I	GGNCC	2 cut(s)	382, 832
BmiI	GGNNCC	2 cut(s)	6, 266
BmrI	ACTGGG	1 cut(s)	1056
BmsI	GCATC	2 cut(s)	286, 846
BmuI	ACTGGG	1 cut(s)	1056
BpiI	GAAGAC	1 cut(s)	1271
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	459, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 1342
Bse1I	ACTGG	6 cut(s)	612, 834, 879, 923, 1023, 1062
Bse3DI	GCAATG	2 cut(s)	135, 365
BseDI	CCNNGG	2 cut(s)	459, 681
BseGI	GGATG	5 cut(s)	691, 784, 861, 970, 1363
BseLI	CCNNNNNNNGG	2 cut(s)	379, 1342
BseMI	GCAATG	2 cut(s)	135, 365
BseMII	CTCAG	4 cut(s)	161, 532, 564, 943
BseNI	ACTGG	6 cut(s)	612, 834, 879, 923, 1023, 1062
BseRI	GAGGAG	3 cut(s)	906, 1271, 1274
BseSI	GKGCMC	1 cut(s)	1007
BseXI	GCAGC	2 cut(s)	548, 846
BseYI	CCCAGC	1 cut(s)	505
BshFI	GGCC	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	96, 1456
BslFI	GGGAC	3 cut(s)	79, 295, 1089
BslI	CCNNNNNNNGG	2 cut(s)	379, 1342
BsmAI	GTCTC	5 cut(s)	30, 58, 507, 940, 1256
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	3 cut(s)	79, 295, 1089
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	680
Bso31I	GGTCTC	1 cut(s)	507
Bsp1286I	GDGCHC	4 cut(s)	96, 884, 1007, 1456
Bsp143I	GATC	5 cut(s)	390, 804, 890, 1095, 1375
BspACI	CCGC	2 cut(s)	898, 912
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	4 cut(s)	162, 531, 563, 942
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	6, 266
BspMAI	CTGCAG	1 cut(s)	864
BspMI	ACCTGC	1 cut(s)	924
BspPI	GGATC	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	914
BsrDI	GCAATG	2 cut(s)	135, 365
BsrI	ACTGG	6 cut(s)	612, 834, 879, 923, 1023, 1062
BssECI	CCNNGG	2 cut(s)	459, 681
BssMI	GATC	5 cut(s)	390, 804, 890, 1095, 1375
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	959, 1426
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	571
BstDEI	CTNAG	7 cut(s)	12, 170, 518, 550, 560, 695, 929
BstEII	GGTNACC	1 cut(s)	742
BstF5I	GGATG	5 cut(s)	691, 784, 861, 970, 1363
BstKTI	GATC	5 cut(s)	393, 807, 893, 1098, 1378
BstMAI	GTCTC	5 cut(s)	30, 58, 507, 940, 1256
BstMBI	GATC	5 cut(s)	390, 804, 890, 1095, 1375
BstMWI	GCNNNNNNNGC	2 cut(s)	487, 634
BstNSI	RCATGY	1 cut(s)	448
BstPI	GGTNACC	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	860
BstSLI	GKGCMC	1 cut(s)	1007
BstV1I	GCAGC	2 cut(s)	548, 846
BstV2I	GAAGAC	1 cut(s)	1271
BstX2I	RGATCY	1 cut(s)	1375
BstYI	RGATCY	1 cut(s)	1375
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	680
BtsCI	GGATG	5 cut(s)	691, 784, 861, 970, 1363
BtsIMutI	CAGTG	2 cut(s)	872, 1437
BveI	ACCTGC	1 cut(s)	924
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	2 cut(s)	382, 832
Csp6I	GTAC	2 cut(s)	166, 827
CspCI	CAANNNNNGTGG	2 cut(s)	1096, 1131
CviAII	CATG	3 cut(s)	445, 758, 802
CviQI	GTAC	2 cut(s)	166, 827
DdeI	CTNAG	7 cut(s)	12, 170, 518, 550, 560, 695, 929
DpnI	GATC	5 cut(s)	392, 806, 892, 1097, 1377
DpnII	GATC	5 cut(s)	390, 804, 890, 1095, 1375
DraI	TTTAAA	1 cut(s)	327
DrdI	GACNNNNNNGTC	1 cut(s)	554
DriI	GACNNNNNGTC	1 cut(s)	1269
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eam1105I	GACNNNNNGTC	1 cut(s)	1269
Ecl136II	GAGCTC	1 cut(s)	1454
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	2 cut(s)	884, 1456
Eco31I	GGTCTC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	382, 832
Eco53kI	GAGCTC	1 cut(s)	1454
Eco57I	CTGAAG	3 cut(s)	578, 1194, 1461
Eco91I	GGTNACC	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	1454
EcoO65I	GGTNACC	1 cut(s)	742
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	2 cut(s)	884, 1456
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	448, 761, 805
FalI	AAGNNNNNCTT	4 cut(s)	706, 738, 1305, 1337
FaqI	GGGAC	3 cut(s)	79, 295, 1089
FatI	CATG	3 cut(s)	444, 757, 801
Fnu4HI	GCNGC	2 cut(s)	537, 860
FokI	GGATG	5 cut(s)	698, 771, 868, 977, 1350
FriOI	GRGCYC	2 cut(s)	884, 1456
Fsp4HI	GCNGC	2 cut(s)	537, 860
FspBI	CTAG	3 cut(s)	332, 888, 1410
GluI	GCNGC	2 cut(s)	537, 860
GsaI	CCCAGC	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	448, 761, 805
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	578, 973
HinfI	GANTC	7 cut(s)	419, 548, 795, 1056, 1083, 1102, 1447
HphI	GGTGA	6 cut(s)	59, 305, 419, 745, 972, 1375
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	8 cut(s)	84, 403, 476, 553, 597, 794, 964, 1047
Hpy188III	TCNNGA	9 cut(s)	35, 256, 529, 802, 808, 1010, 1093, 1099, 1410
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	6 cut(s)	398, 592, 655, 1112, 1377, 1436
HpyCH4III	ACNGT	2 cut(s)	959, 1426
HpyCH4IV	ACGT	5 cut(s)	51, 188, 339, 525, 570
HpyCH4V	TGCA	7 cut(s)	490, 500, 616, 637, 843, 862, 1153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	487, 634
HpyF3I	CTNAG	7 cut(s)	12, 170, 518, 550, 560, 695, 929
HpySE526I	ACGT	5 cut(s)	51, 188, 339, 525, 570
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	448, 761, 805
Kzo9I	GATC	5 cut(s)	390, 804, 890, 1095, 1375
LmnI	GCTCC	4 cut(s)	10, 375, 919, 1321
Lsp1109I	GCAGC	2 cut(s)	548, 846
LweI	GCATC	2 cut(s)	286, 846
MaeI	CTAG	3 cut(s)	332, 888, 1410
MaeII	ACGT	5 cut(s)	51, 188, 339, 525, 570
MaeIII	GTNAC	4 cut(s)	47, 742, 978, 1433
MalI	GATC	5 cut(s)	392, 806, 892, 1097, 1377
MbiI	CCGCTC	1 cut(s)	914
MboI	GATC	5 cut(s)	390, 804, 890, 1095, 1375
MboII	GAAGA	8 cut(s)	29, 32, 476, 640, 790, 1078, 1200, 1271
MflI	RGATCY	1 cut(s)	1375
MhlI	GDGCHC	4 cut(s)	96, 884, 1007, 1456
MlyI	GAGTC	2 cut(s)	542, 1111
MmeI	TCCRAC	2 cut(s)	32, 171
MroXI	GAANNNNTTC	3 cut(s)	78, 647, 753
MseI	TTAA	9 cut(s)	27, 114, 326, 725, 1169, 1301, 1326, 1341, 1468
MslI	CAYNNNNRTG	3 cut(s)	806, 1287, 1388
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	487, 634
NdeII	GATC	5 cut(s)	390, 804, 890, 1095, 1375
NlaIII	CATG	3 cut(s)	448, 761, 805
NlaIV	GGNNCC	2 cut(s)	6, 266
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	2 cut(s)	47, 978
NspI	RCATGY	1 cut(s)	448
PagI	TCATGA	1 cut(s)	801
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	3 cut(s)	78, 647, 753
PfeI	GAWTC	5 cut(s)	419, 795, 1056, 1083, 1447
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	538, 861
PleI	GAGTC	2 cut(s)	542, 1110
PpsI	GAGTC	2 cut(s)	542, 1110
Ppu21I	YACGTR	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	1456
Psp1406I	AACGTT	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	6, 266
PspPI	GGNCC	2 cut(s)	382, 832
PstI	CTGCAG	1 cut(s)	864
PsuI	RGATCY	1 cut(s)	1375
RsaI	GTAC	2 cut(s)	167, 828
RsaNI	GTAC	2 cut(s)	166, 827
RseI	CAYNNNNRTG	3 cut(s)	806, 1287, 1388
SacI	GAGCTC	1 cut(s)	1456
SaqAI	TTAA	9 cut(s)	27, 114, 326, 725, 1169, 1301, 1326, 1341, 1468
SatI	GCNGC	2 cut(s)	537, 860
Sau3AI	GATC	5 cut(s)	390, 804, 890, 1095, 1375
Sau96I	GGNCC	2 cut(s)	382, 832
SchI	GAGTC	2 cut(s)	542, 1111
SduI	GDGCHC	4 cut(s)	96, 884, 1007, 1456
SfaNI	GCATC	2 cut(s)	286, 846
SfcI	CTRYAG	1 cut(s)	860
SinI	GGWCC	2 cut(s)	382, 832
SmiMI	CAYNNNNRTG	3 cut(s)	806, 1287, 1388
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	331
SsiI	CCGC	2 cut(s)	898, 912
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	3 cut(s)	332, 888, 1410
SstI	GAGCTC	1 cut(s)	1456
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	959, 1426
TaiI	ACGT	5 cut(s)	54, 191, 342, 528, 573
TaqI	TCGA	6 cut(s)	34, 96, 223, 575, 656, 1450
TatI	WGTACW	1 cut(s)	826
TfiI	GAWTC	5 cut(s)	419, 795, 1056, 1083, 1447
Tru1I	TTAA	9 cut(s)	27, 114, 326, 725, 1169, 1301, 1326, 1341, 1468
Tru9I	TTAA	9 cut(s)	27, 114, 326, 725, 1169, 1301, 1326, 1341, 1468
TscAI	CASTG	2 cut(s)	879, 1444
TseFI	GTSAC	2 cut(s)	47, 978
TseI	GCWGC	2 cut(s)	536, 859
Tsp45I	GTSAC	2 cut(s)	47, 978
TspGWI	ACGGA	1 cut(s)	1064
TspRI	CASTG	2 cut(s)	879, 1444
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	382, 832
XapI	RAATTY	2 cut(s)	644, 690
XbaI	TCTAGA	1 cut(s)	1409
XceI	RCATGY	1 cut(s)	448
XmnI	GAANNNNTTC	3 cut(s)	78, 647, 753
XspI	CTAG	3 cut(s)	332, 888, 1410
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.