Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353267.1

Orthogroup ID

OG0005682

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1050

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 658 bp

atgcagagggctttaatgttcatggcctacaggtgctgcatcattcagtggaggacaatgttgaaggcactcagagcctgcagattgagaaggtctctggagaagatgagaatgaagagaataagatttcagtggtggaaaagttcagggctttgcttggattgaggagcttacacaagaggacaccatcaaatggtgacagtgaatatgtgtctccatctccttctccttcacccttcagtgaagctgaggctccaagtccggctcctgctcctgctccggtgctgcacatccgtccacattcacatcatccacaccggttgcgctcaatctctcctcctcgaaaaattgttagagaggatgataaaggcagaaccagaaagatacttatagctgtccttgtttcagctggagctgctactttgattagtgtgcttggcctcatatggggttgcaggaagtacgaagagcacaagaagaaacccacaagagtgatctcactttacggtgaaaagggaggaggaacaagcggtggatcaaagcatgttggttctcaaataccagcaagcaaggtgagcttaaaccctggcactcatgatcttatttatgttgattcattaggcattgaagatgtagagcaacaacaacaacaacagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

219

Amino Acids

23.79

Weight (kDa)

7.4

Isoelectric Point (pI)

66.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05470
fragaria_vesca	FvH4_6g06480
malus_domestica	MD04G1201400.v1.1 MD12G1215100.v1.1
prunus_persica	Prupe.6G321600_v2.0.a1
pyrus_communis	pycom04g17740 pycom04g17750 pycom15g25860
rosa_chinensis	RchiOBHm_Chr3g0455601
rosa_laevigata	RLG00000025349
rosa_multiflora	Rmu_co8344379.1_g000001 Rmu_co8353267.1_g000001 Rmu_sc0000220.1_g000003 Rmu_sc0000223.1_g000001 Rmu_sc0005164.1_g000004 Rmu_sc0021585.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423690 Rroxscaffold_6G00424180
rosa_rugosa	Rorug03G0008600 Rorug03G0008600
rosa_samantha	Rh2AG197000 Rh2DG204900 Rh3AG067900 Rh3BG070500 Rh3CG068800 Rh3DG070400 Rh7DG489800
rosa_wichuraiana	Rw3G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	193, 447
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	64, 628
AjnI	CCWGG	1 cut(s)	585
AleI	CACNNNNGTG	1 cut(s)	490
AluBI	AGCT	6 cut(s)	170, 247, 394, 409, 415, 578
AluI	AGCT	6 cut(s)	170, 247, 394, 409, 415, 578
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	99, 218
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	2 cut(s)	36, 78
AoxI	GGCC	2 cut(s)	24, 438
ApeKI	GCWGC	3 cut(s)	36, 285, 415
AsiGI	ACCGGT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	326
AsuHPI	GGTGA	4 cut(s)	208, 224, 520, 585
Bbv12I	GWGCWC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	23, 272, 402
BccI	CCATC	2 cut(s)	195, 225
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	99, 218
BfmI	CTRYAG	2 cut(s)	28, 79
BisI	GCNGC	3 cut(s)	37, 286, 416
BlsI	GCNGC	3 cut(s)	38, 287, 417
Bme1390I	CCNGG	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	254, 266
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpmI	CTGGAG	2 cut(s)	119, 431
Bpu10I	CCTNAGC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	2 cut(s)	279, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 447
Bse118I	RCCGGY	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	3 cut(s)	290, 309, 366
BseLI	CCNNNNNNNGG	2 cut(s)	193, 447
BseMII	CTCAG	2 cut(s)	85, 239
BseRI	GAGGAG	4 cut(s)	180, 326, 329, 533
BseXI	GCAGC	3 cut(s)	23, 272, 402
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	26, 440
BshTI	ACCGGT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	262, 280, 318
BslI	CCNNNNNNNGG	2 cut(s)	193, 447
BsmAI	GTCTC	2 cut(s)	99, 218
BsnI	GGCC	2 cut(s)	26, 440
Bso31I	GGTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	494, 535, 597
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	2 cut(s)	26, 440
BspCNI	CTCAG	2 cut(s)	84, 240
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	254, 266
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	3 cut(s)	494, 535, 597
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	202, 508
Bst6I	CTCTTC	2 cut(s)	110, 461
BstC8I	GCNNGC	2 cut(s)	79, 567
BstDEI	CTNAG	2 cut(s)	71, 248
BstF5I	GGATG	3 cut(s)	290, 309, 366
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	3 cut(s)	497, 538, 600
BstMAI	GTCTC	2 cut(s)	99, 218
BstMBI	GATC	3 cut(s)	494, 535, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 415, 575
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	2 cut(s)	28, 79
BstV1I	GCAGC	3 cut(s)	23, 272, 402
BsuRI	GGCC	2 cut(s)	26, 440
BtsCI	GGATG	3 cut(s)	290, 309, 366
BtsIMutI	CAGTG	4 cut(s)	53, 137, 207, 246
Cac8I	GCNNGC	2 cut(s)	79, 567
CaiI	CAGNNNCTG	2 cut(s)	36, 78
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	317
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	3 cut(s)	22, 544, 595
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	71, 248
DpnI	GATC	3 cut(s)	496, 537, 599
DpnII	GATC	3 cut(s)	494, 535, 597
Eam1104I	CTCTTC	2 cut(s)	110, 461
EarI	CTCTTC	2 cut(s)	110, 461
Eco31I	GGTCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	585
FaeI	CATG	3 cut(s)	25, 547, 598
FaiI	YATR	8 cut(s)	23, 209, 391, 445, 447, 545, 596, 608
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FatI	CATG	3 cut(s)	21, 543, 594
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	37, 286, 416
FokI	GGATG	3 cut(s)	277, 296, 373
Fsp4HI	GCNGC	3 cut(s)	37, 286, 416
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	3 cut(s)	37, 286, 416
GsuI	CTGGAG	2 cut(s)	119, 431
HaeIII	GGCC	2 cut(s)	26, 440
HapII	CCGG	3 cut(s)	262, 280, 318
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	3 cut(s)	25, 547, 598
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	3 cut(s)	262, 280, 318
HphI	GGTGA	4 cut(s)	208, 224, 520, 585
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	2 cut(s)	98, 595
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	5 cut(s)	58, 84, 233, 239, 246
HpyCH4III	ACNGT	2 cut(s)	202, 508
HpyCH4V	TGCA	5 cut(s)	4, 39, 81, 288, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 415, 575
HpyF3I	CTNAG	2 cut(s)	71, 248
Hsp92II	CATG	3 cut(s)	25, 547, 598
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	494, 535, 597
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	6 cut(s)	167, 258, 270, 276, 282, 412
Lsp1109I	GCAGC	3 cut(s)	23, 272, 402
LweI	GCATC	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	3 cut(s)	496, 537, 599
MboI	GATC	3 cut(s)	494, 535, 597
MboII	GAAGA	5 cut(s)	115, 127, 478, 489, 640
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	1 cut(s)	347
MseI	TTAA	2 cut(s)	14, 580
MslI	CAYNNNNRTG	1 cut(s)	490
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	3 cut(s)	262, 280, 318
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	74, 415, 575
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	3 cut(s)	494, 535, 597
NlaIII	CATG	3 cut(s)	25, 547, 598
NlaIV	GGNNCC	2 cut(s)	254, 266
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	490
PagI	TCATGA	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	38, 287, 417
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	254, 266
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	2 cut(s)	36, 78
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	14, 580
SatI	GCNGC	3 cut(s)	37, 286, 416
Sau3AI	GATC	3 cut(s)	494, 535, 597
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	9 cut(s)	35, 95, 172, 249, 396, 411, 417, 575, 580
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	2 cut(s)	28, 79
SmiMI	CAYNNNNRTG	1 cut(s)	490
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	202, 508
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	14, 580
Tru9I	TTAA	2 cut(s)	14, 580
TscAI	CASTG	4 cut(s)	53, 137, 207, 246
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	36, 285, 415
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	10, 128, 605
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	4 cut(s)	53, 137, 207, 246
Van91I	CCANNNNNTGG	1 cut(s)	193
XceI	RCATGY	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.