Rh7DG489800

Belongs to the formin-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005682
Physical Location & Seq
Reverse (-)
69526953 .. 69533664
6712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG489800.1

Sequence Viewer

Length: 630 bp
ATGACATGTAAAAGACAACAAAGGTTTTTCCAAAAGATATTGAACATTGGTTGCATTGGACAAGAGAAGGAGGCCTGCAAGGAAGTCAGACCAAGCAGGCTGTTCTTGAAGTTACTTGAAGCCGTGTTGAAAACAGGCAACTGGATGAATGTGGGAACTATCAAAGGAGGTGCTAGAGCATTCAAGATAGACGCGCTTCTCAAACTTGCTGATGTGAAAGGAACTGATGGAAAGACTACCTTGTTACACTTTGTGGTGCAAGAAATAATAAGGGCTGAAGGGATCAGAGTTTCGGATAGCATAATGGGTAGGATCAGCCAGAAAAACAAACTCAAGACAGTTGAAGAGAAGGAAGAAGATTATAAAAGAATGGGGCTAGACCTCGTCTCCGGTCTCAGCACTGAACTCTACAATGCAAAGAAGACGGCTACATTGGATTTGTACATCTTGCAAGTGTATCAAGACCGTTTTCAGCAGTATGATCGATTGCCACATCCTGAAAGAGTGACTAATATATCCTCAGAAGCAGTGCAACTTGACGACGACAATGTACTTGCCGATGAAATTGTTCAACTTGGTGATGTCACTATGTCTAGCGAAGAAGAAACAATACATCTTGGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FH2

Protein Analysis

209

Amino Acids

23.68

Weight (kDa)

5.75

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FH2 PF02181 23 - 151 1.7e-30 Formin Homology 2 Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccII CGCG 1 cut(s) 194
AclWI GGATC 2 cut(s) 290, 320
AcuI CTGAAG 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 2 cut(s) 443, 552
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 7 cut(s) 43, 109, 119, 130, 184, 344, 572
Alw26I GTCTC 2 cut(s) 391, 398
AlwI GGATC 2 cut(s) 290, 320
AoxI GGCC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 590
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BbsI GAAGAC 1 cut(s) 428
BccI CCATC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 107, 441
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BcoDI GTCTC 2 cut(s) 391, 398
BfaI CTAG 3 cut(s) 174, 377, 594
BpiI GAAGAC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 484
BsaI GGTCTC 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bse1I ACTGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 484
BseGI GGATG 2 cut(s) 150, 493
BseMII CTCAG 2 cut(s) 409, 534
BseNI ACTGG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 484
BsiSI CCGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 391, 398
BsmBI CGTCTC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 3 cut(s) 282, 312, 481
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 408, 533
BspDI ATCGAT 1 cut(s) 484
BspFNI CGCG 1 cut(s) 194
BspPI GGATC 2 cut(s) 290, 320
BspTNI GGTCTC 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 1 cut(s) 146
BssMI GATC 3 cut(s) 282, 312, 481
Bst4CI ACNGT 2 cut(s) 340, 467
Bst6I CTCTTC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 76, 98
BstDEI CTNAG 2 cut(s) 395, 520
BstF5I GGATG 2 cut(s) 150, 493
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 285, 315, 484
BstMAI GTCTC 2 cut(s) 391, 398
BstMBI GATC 3 cut(s) 282, 312, 481
BstNSI RCATGY 1 cut(s) 9
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 484
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 484
BtsCI GGATG 2 cut(s) 150, 493
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 399, 534
Cac8I GCNNGC 2 cut(s) 76, 98
CfoI GCGC 1 cut(s) 196
ClaI ATCGAT 1 cut(s) 484
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 442, 551
CviAII CATG 1 cut(s) 6
CviJI RGCY 7 cut(s) 74, 100, 122, 275, 318, 376, 428
CviKI_1 RGCY 7 cut(s) 74, 100, 122, 275, 318, 376, 428
CviQI GTAC 2 cut(s) 442, 551
DdeI CTNAG 2 cut(s) 395, 520
DpnI GATC 3 cut(s) 284, 314, 483
DpnII GATC 3 cut(s) 282, 312, 481
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 1 cut(s) 9
FaiI YATR 6 cut(s) 7, 302, 363, 480, 515, 590
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 1 cut(s) 5
FokI GGATG 2 cut(s) 157, 480
FspBI CTAG 3 cut(s) 174, 377, 594
GlaI GCGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 9
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 89, 287, 295, 523
Hpy188III TCNNGA 5 cut(s) 106, 184, 334, 461, 497
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 3 cut(s) 61, 272, 343
HpyCH4III ACNGT 2 cut(s) 340, 467
HpyCH4V TGCA 6 cut(s) 54, 78, 259, 416, 451, 532
HpyF3I CTNAG 2 cut(s) 395, 520
Hsp92II CATG 1 cut(s) 9
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 3 cut(s) 282, 312, 481
LpnPI CCDG 7 cut(s) 82, 88, 120, 127, 332, 403, 510
MaeI CTAG 3 cut(s) 174, 377, 594
MaeIII GTNAC 4 cut(s) 111, 243, 505, 583
MalI GATC 3 cut(s) 284, 314, 483
MboI GATC 3 cut(s) 282, 312, 481
MboII GAAGA 6 cut(s) 356, 365, 368, 433, 611, 614
MluCI AATT 1 cut(s) 564
MnlI CCTC 4 cut(s) 64, 161, 392, 529
MroXI GAANNNNTTC 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 618
MspI CCGG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 179
MvnI CGCG 1 cut(s) 194
NdeII GATC 3 cut(s) 282, 312, 481
NlaIII CATG 1 cut(s) 9
NmuCI GTSAC 2 cut(s) 505, 583
NspI RCATGY 1 cut(s) 9
PceI AGGCCT 1 cut(s) 74
PciI ACATGT 1 cut(s) 5
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 567
PflFI GACNNNGTC 1 cut(s) 383
PscI ACATGT 1 cut(s) 5
PsiI TTATAA 1 cut(s) 363
PsyI GACNNNGTC 1 cut(s) 383
RsaI GTAC 2 cut(s) 443, 552
RsaNI GTAC 2 cut(s) 442, 551
RseI CAYNNNNRTG 1 cut(s) 618
Sau3AI GATC 3 cut(s) 282, 312, 481
SetI ASST 4 cut(s) 26, 172, 242, 384
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 1 cut(s) 564
SseBI AGGCCT 1 cut(s) 74
SspMI CTAG 3 cut(s) 174, 377, 594
StuI AGGCCT 1 cut(s) 74
TaaI ACNGT 2 cut(s) 340, 467
TaqI TCGA 1 cut(s) 484
TasI AATT 1 cut(s) 564
TatI WGTACW 2 cut(s) 441, 550
TscAI CASTG 2 cut(s) 406, 534
TseFI GTSAC 2 cut(s) 505, 583
Tsp45I GTSAC 2 cut(s) 505, 583
TspDTI ATGAA 2 cut(s) 161, 576
TspRI CASTG 2 cut(s) 406, 534
Tth111I GACNNNGTC 1 cut(s) 383
XceI RCATGY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 3 cut(s) 174, 377, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.